Explore scholarly publications from the Graduate School of Oceanography faculty at the University of Rhode Island.

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Manuscripts from 2009

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Impact of the assimilation of ozone from the tropospheric emission spectrometer on surface ozone across North America, M. Parrington, D. B.A. Jones, K. W. Bowman, A. M. Thompson, D. W. Tarasick, J. Merrill, S. J. Oltmans, T. Leblanc, J. C. Witte, and D. B. Millet

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Airborne Observations of Total RONO2: New Constraints on the Yield and Lifetime of Isoprene Nitrates, A. E. Perring, T. H. Bertram, P. J. Wooldridge, A. Fried, B. G. Heikes, J. Dibb, J. D. Crounse, P. O. Wennberg, N. J. Blake, D. R. Blake, W. H. Brune, H. B. Singh, and R. C. Cohen

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Foraminiferal isotope evidence of reduced nitrogen fixation in the ice age Atlantic ocean, H. Ren, D. M. Sigman, A. N. Meckler, B. Plessen, R. S. Robinson, Y. Rosenthal, and G. H. Haug

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Effect of selected marine and freshwater microalgae on development and survival of the mosquito Aedes aegypti, Jorge R. Rey, Paul E. Hargraves, and Sheila M. O'Connell

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Nitrogen isotopic evidence for deglacial changes in nutrient supply in the eastern equatorial Pacific, Rebecca S. Robinson, P. Martinez, L. D. Pena, and I. Cacho

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An isopycnal view of the Nordic Seas hydrography with focus on properties of the Lofoten Basin, T. Rossby, Vladimir Ozhigin, Victor Ivshin, and Sheldon Bacon

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Pathways of inflow and dispersion of warm waters in the Nordic seas, T. Rossby, M. D. Prater, and H. Søiland

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Metapopulation Structure in the Planktonic Diatom Ditylum brightwellii (Bacillariophyceae), Tatiana A. Rynearson, Ellen O. Lin, and E. Virginia Armbrust

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Sulfate-reducing ammonium oxidation: A thermodynamically feasible metabolic pathway in subseafloor sediment, Heather N. Schrum, Arthur J. Spivack, Miriam Kastner, and Steven D'Hondt

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Development of a New Lagrangian Float for Studying Coastal Marine Ecosystems, Alex Schwithal and Chris Roman

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Atlantic forcing of persistent drought in West Africa, T. M. Shanahan, J. T. Overpeck, K. J. Anchukaitis, J. W. Beck, J. E. Cole, D. L. Dettman, J. A. Peck, C. A. Scholz, and J. W. King

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Radiocarbon analysis of atmospheric formaldehyde using cystamine derivatization, Haiwei Shen, Ann P. McNichol, Li Xu, Alan Gagnon, and Brian G. Heikes

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Seismic evidence for a Moho offset and south-directed thrust at the easternmost Qaidam-Kunlun boundary in the Northeast Tibetan plateau, Danian Shi, Yang Shen, Wenjin Zhao, and Aibing Li

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Hydrogenase activity in deeply buried sediments of the Arctic and North Atlantic Oceans, Bruno Soffientino, Arthur J. Spivack, David C. Smith, and Steven D'Hondt

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Rebuilding Global Fisheries, Boris Worm, Ray Hilborn, Julia K. Baum, Trevor A. Branch, Jeremy S. Collie, Christopher Costello, Michael J. Fogarty, Elizabeth A. Fulton, Jeffrey A. Hutchings, Simon Jennings, Olaf P. Jensen, Heike K. Lotze, Pamela M. Mace, Tim R. McClanahan, Cóilín Minto, Stephen R. Palumbi, Ana M. Parma, Daniel Ricard, Andrew A. Rosenberg, Reg Watson, and Dirk Zeller

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Coupled patterns between fields of dynamic height and bottom pressure in the Japan/East Sea, Yongsheng Xu, D. Randolph Watts, and Mark Wimbush

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Limitation of one-dimensional ocean models for coupled hurricane-ocean model forecasts, R. M. Yablonsky and Isaac Ginis

Manuscripts from 2008

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Study of the Kuroshio/Ryukyu current system based on satellite-altimeter and in situ measurements, Magdalena Andres, Jae Hun Park, Mark Wimbush, Xiao Hua Zhu, Kyung Il Chang, and Hiroshi Ichikawa

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Observations of Kuroshio flow variations in the East China Sea, Magdalena Andres, Mark Wimbush, J.-H. Park, K.-I. Chang, B.-H. Lim, D. Randolph Watts, H. Ichikawa, and W. J. Teague

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Changes in a benthic megafaunal community due to disturbance from bottom fishing and the establishment of a fishery closure, Rebecca G. Asch and Jeremy S. Collie

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Factors influencing the recruitment and abundance of Didemnum in Narragansett Bay, Rhode Island, Linda A. Auker and Candace A. Oviatt

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Age model and core‐seismic integration for the Cenozoic Arctic Coring Expedition sediments from the Lomonosov Ridge, Jan Backman, Martin Jakobsson, Martin Frank, Francesca Sangiorgi, Henk Brinkhuis, Catherine Stickley, Matthew O'Regan, Reidar Løvlie, Heiko Pälike, David Spofforth, Jérôme Gattacecca, Kate Moran, John W. King, and Chip Heil

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The Phaeodactylum genome reveals the evolutionary history of diatom genomes, Chris Bowler, Bethany D. Jenkins, Tatiana A. Rynearson, and et al

Evaluating PAH biodegradation relative to total bacterial carbon demand in coastal ecosystems: Are PAHs truly recalcitrant?, Thomas J. Boyd, David C. Smith, Jude K. Apple, Leila J. Hamdan, Christopher L. Osburn, and Michael T. Montgomery

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Reply to comment by Yannick Garcin on "Abrupt change in tropical African climate linked to the bipolar seesaw over the past 55,000 years", E. T. Brown, T. C. Johnson, C. A. Scholz, A. S. Cohen, and J. W. King

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Winter flounder larval genetic population structure in Narragansett Bay, RI: Recruitment to juvenile young-of-the-year, Larry Buckley, Jeremy Collie, Lisa A.E. Kaplan, and Joseph Crivello

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Byzantium Beneath the Black Sea, Bridget Buxton, Robert Ballard, Michael Brennan, Dwight Coleman, Katy Croff, Christopher Roman, Dan Davis, Dennis Piechota, and Sergiy Voronov

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The response of benthic macrofauna to anthropogenic stress in Narragansett Bay, Rhode Island: A review of human stressors and assessment of community conditions, Christopher J. Calabretta and Candace A. Oviatt

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Resuspension of contaminated field and formulated reference sediments Part I: Evaluation of metal release under controlled laboratory conditions, Mark G. Cantwell, Robert M. Burgess, and John W. King

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Long-term shifts in the species composition of a coastal fish community, Jeremy S. Collie, Anthony D. Wood, and H. Perry Jeffries

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Using satellite-derived sst fronts to evaluate an eddy resolving numerical circulation model, Peter Cornillon and Andrew Eichmann

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Quaternary paleoceanography of the central Arctic based on Integrated Ocean Drilling Program Arctic Coring Expedition 302 foraminiferal assemblages, Thomas M. Cronin, Shannon A. Smith, Frédérique Eynaud, Matthew O'Regan, and John King

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Program studies the Kuroshio extension, Kathleen Donohue, D. Randolph Watts, Karen Tracey, Mark Wimbush, Jae Hun Park, Nicholas Bond, Meghan Cronin, Shuiming Chen, Bo Qiu, Peter Hacker, Nelson Hogg, Steven Jayne, Julie MCClean, Luc Rainville, Humio Mitsudera, Youichi Tanimoto, and Shang Ping Xie

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Measurement of copepod predation on nauplii using qPCR of the cytochrome oxidase I gene, Edward G. Durbin, Maria C. Casas, Tatiana A. Rynearson, and David C. Smith

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Simulation of the 1980 eruption of Mount St. Helens using the ash-tracking model PUFF, Julie Fero, Steven N. Carey, and John T. Merrill

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Variable Morphologic Expression of Volcanic, Tectonic, and Hydrothermal Processes at Six Hydrothermal Vent Fields in the Lau Back-Arc Basin, Vicki Lynn Ferrini, Margaret K. Tivey, Suzanne M. Carbotte, Fernando Martinez, and Chris Roman

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Beryllium isotopes in central Arctic Ocean sediments over the past 12.3 million years: Stratigraphic and paleoclimatic implications, Martin Frank, Jan Backman, Martin Jakobsson, Kate Moran, Matthew O'Regan, John W. King, Brian A. Haley, Peter W. Kubik, and Dieter Garbe-Schönberg

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Role of convection in redistributing formaldehyde to the upper troposphere over North America and the North Atlantic during the summer 2004 INTEX campaign, Alan Fried, Haiwei Shen, and et al

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Formaldehyde over North America and the North Atlantic during the summer 2004 INTEX campaign: Methods, observed distributions, and measurement‐model comparisons, Alan Fried, James G. Walega, Jennifer R. Olson, Jim H. Crawford, Gao Chen, Petter Weibring, Dirk Richter, Chad Roller, Frank K. Tittel, Brian G. Heikes, Julie A. Snow, Haiwei Shen, Daniel W. O'Sullivan, Michael Porter, Henry Fuelberg, Jeremy Halland, and Dylan B. Millet

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Nitrogen in Past Marine Environments, Eric D. Galbraith, Daniel M. Sigman, Rebecca S. Robinson, and Thomas F. Pedersen

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Polychlorinated biphenyls in air and water of the North Atlantic and Arctic Ocean, Rosalinda Gioia, Rainer Lohmann, Jordi Dachs, Christian Temme, Soenke Lakaschus, Stlef Schulz-Bull, Ines Hand, and Kevin C. Jones

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Polychlorinated biphenyls (PCBs) in air and seawater of the Atlantic Ocean: Sources, trends and processes, Rosalinda Gioia, Luca Nizzetto, Rainer Lohmann, Jordi Dachs, Christian Temme, and Kevin C. Jones

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Allelopathy at the land/sea interface: Microalgae and Brazilian pepper, Paul E. Hargraves

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Evaluation and application of satellite primary production models in Massachusetts Bay, Kimberly J.W. Hyde, John E. O'Reilly, and Candace A. Oviatt

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Long-baseline acoustic navigation for under-ice autonomous underwater vehicle operations, Michael V. Jakuba, Christopher N. Roman, Hanumant Singh, Christopher Murphy, Clayton Kunz, Claire Willis, Taichi Sato, and Robert A. Sohn

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Characteristics of Calanus finmarchicus dormancy patterns in the Northwest Atlantic, Catherine L. Johnson, Andrew W. Leising, Jeffrey A. Runge, Erica J.H. Head, Pierre Pepin, Stéphane Plourde, and Edward G. Durbin

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Variations of Kuroshio geostrophic transport south of Japan estimated from long-term IES observations, Koji Kakinoki, Shiro Imawaki, Hiroshi Uchida, Hirohiko Nakamura, Kaoru Ichikawa, Shin Ichiro Umatani, Ayako Nishina, Hiroshi Ichikawa, and Mark Wimbush

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New cell extraction procedure applied to deep subsurface sediments, Jens Kallmeyer, David C. Smith, Arthur J. Spivack, and Steven D'Hondt

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The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part II: Growing Seas, Tobias Kukulka and Tetsu Hara

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The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part I: Mature Seas, Tobias Kukulka and Tetsu Hara

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Deep Sea Underwater Robotic Exploration in the Ice-Covered Arctic Ocean With AUVs, Clayton Kunz, Chris Murphy, Richard Camilli, Hanumant Singh, John Bailey, Ryan M. Eustice, Chris Roman, Michael Jakuba, Claire Willis, Taichi Sato, Ko-ichi Nakamura, and Robert A. Sohn

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3500 yr record of centennial-scale climate variability from the Western Pacific Warm Pool, S. J. Langton, B. K. Linsley, R. S. Robinson, Y. Rosenthal, D. W. Oppo, T. I. Eglinton, S. S. Howe, Y. S. Djajadihardja, and F. Syamsudin

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Evolution of lakes in the Huron basin: Deglaciation to present, C. F. Michael Lewis, Paul F. Karrow, Stefan M. Blasco, Francine M.G. McCarthy, John W. King, Theodore C. Moore, and David K. Rea

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Dry climate disconnected the Laurentian Great Lakes, C. F. Michael Lewis, John W. King, Stefan M. Blasco, Gregory R. Brooks, John P. Coakley, Thomas E. Croley, David L. Dettman, Thomas W.D. Edwards, Clifford W. Heil, J. Bradford Hubeny, Kathleen R. Laird, John H. McAndrews, Francine M.G. McCarthy, Barbara E. Medioli, Theodore C. Moore, David K. Rea, and Alison J. Smith

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On the size and distribution of rings and coherent vortices in the Sargasso Sea, David L. Luce and Tom Rossby

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Community and household determinants of water quality in coastal Ghana, Stephen T. McGarvey, Justin Buszin, Holly Reed, David C. Smith, Zarah Rahman, Catherine Andrzejewski, Kofi Awusabo-Asare, and Michael J. White

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Impact of the Reduced Drag Coefficient on Ocean Wave Modeling under Hurricane Conditions, Il-Ju Moon, Isaac Ginis, and Tetsu Hara

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Detecting air-water and surface-deep water gradients of PCBs using polyethylene passive samplers, Eric J. Morgan and Rainer Lohmann

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Validation of Tropospheric Emission Spectrometer (TES) nadir ozone profiles using ozonesonde measurements, Ray Nassar, Jennifer A. Logan, Helen M. Worden, Inna A. Megretskaia, Kevin W. Bowman, Gregory B. Osterman, Anne M. Thompson, David W. Tarasick, Shermane Austin, Hans Claude, Manvendra K. Dubey, Wayne K. Hocking, Bryan J. Johnson, Everette Joseph, John Merrill, Gary A. Morris, Mike Newchurch, Samuel J. Oltmans, Françoise Posny, F. J. Schmidlin, Holger Vömel, David N. Whiteman, and Jacquelyn C. Witte

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Late Pliocene-early Pleistocene 100-ka problem, Junsheng Nie, John King, and Xiaomin Fang

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AC magnetic susceptibility studies of Chinese red clay sediments between 4.8 and 4.1 Ma: Paleoceanographic and paleoclimatic implications, Junsheng Nie, John King, Mike Jackson, Xiaomin Fang, and Yougui Song

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Surface-water freshening: A cause for the onset of North Pacific stratification from 2.75 Ma onward?, Junsheng Nie, John King, Zhengyu Liu, Steve Clemens, Warren Prell, and Xiaomin Fang

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Correlation between the magnetic susceptibility record of the Chinese aeolian sequences and the marine benthic oxygen isotope record, Junsheng Nie, John W. King, and Xiaomin Fang

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Link between benthic oxygen isotopes and magnetic susceptibility in the red-clay sequence on the Chinese Loess Plateau, Junsheng Nie, John W. King, and Xiaomin Fang

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Tibetan uplift intensified the 400 k.y. signal in paleoclimate records at 4 Ma, Junsheng Nie, John W. King, and Xiaomin Fang

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PAHs in air and seawater along a North-South Atlantic transect: Trends, processes and possible sources, Luca Nizzetto, Rainer Lohmann, Rosalinda Gioia, Annika Jahnke, Christian Temme, Jordi Dachs, Pierre Herckes, Antonio Di Guardo, and Kevin C. Jones

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Relationship of predation potential to mortality of Calanus finmarchicus on Georges Bank, northwest Atlantic, Mark D. Ohman, Edward G. Durbin, Jeffrey A. Runge, Barbara K. Sullivan, and David B. Field

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Constraints on the Pleistocene chronology of sediments from the Lomonosov Ridge, Matthew O'Regan, John King, Jan Backman, Martin Jakobsson, Heiko Pälike, Kathryn Moran, Clifford Heil, Tatsuhiko Sakamoto, Thomas M. Cronin, and Richard W. Jordan

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A comparison of in situ bottom pressure array measurements with GRACE estimates in the Kuroshio Extension, Jae Hun Park, D. Randolph Watts, Kathleen A. Donohue, and Steven R. Jayne

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HOx chemistry during INTEX‐A 2004: Observation, model calculation, and comparison with previous studies, Xinrong Ren, Jennifer R. Olson, James H. Crawford, William H. Brune, Jingqiu Mao, Robert B. Long, Zhong Chen, Gao Chen, Melody A. Avery, Glen W. Sachse, John D. Barrick, Glenn S. Diskin, L. Greg Huey, Alan Fried, Ronald C. Cohen, Brian Heikes, Paul O. Wennberg, Hanwant B. Singh, Donald R. Blake, and Richard E. Shetter

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Finite frequency tomography in southeastern Tibet: Evidence for the causal relationship between mantle lithosphere delamination and the north-south trending rifts, Yong Ren and Yang Shen

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Nitrogen isotopic evidence for a poleward decrease in surface nitrate within the ice age Antarctic, Rebecca S. Robinson and Daniel M. Sigman

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Free falling probe current and temperature measurement system, T. Rossby and Viola Wolter

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The formation of biogeochemical laminations in Lake Bosumtwi, Ghana, and their usefulness as indicators of past environmental changes, Timothy M. Shanahan, Jonathan T. Overpeck, J. Warren Beck, C. Winston Wheeler, John A. Peck, John W. King, and Christopher A. Scholz

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Abrupt changes in the water balance of tropical West Africa during the late quaternary, Timothy M. Shanahan, Jonathan T. Overpeck, Christopher A. Scholz, J. Warren Beck, John Peck, and John W. King

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Scanning micro-X-ray fluorescence elemental mapping: A new tool for the study of laminated sediment records, T. M. Shanahan, J. T. Overpeck, J. B. Hubeny, J. King, F. S. Hu, K. Hughen, G. Miller, and J. Black

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Hydrogen isotopes in Mariana arc melt inclusions: Implications for subduction dehydration and the deep-Earth water cycle, A. M. Shaw, E. H. Hauri, T. P. Fischer, D. R. Hilton, and K. A. Kelley

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Component-Dependent Fréchet Sensitivity Kernels and Utility of Three-Component Seismic Records, Yang Shen, Zhigang Zhang, and Li Zhao

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Air-sea interaction over ocean fronts and eddies, R. J. Small, S. P. deSzoeke, S. P. Xie, L. O'Neill, H. Seo, Q. Song, P. Cornillon, M. Spall, and S. Minobe

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Rigid topographic control of currents in the Nordic Seas, Henrik Søiland, M. D. Prater, and T. Rossby

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Integrable motion of a vortex dipole in an axisymmetric flow, G. G. Suyrin, X. Perrot, and X. Carton

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Copepod feeding response to varying Alexandrium spp. cellular toxicity and cell concentration among natural plankton samples, Gregory J. Teegarden, Robert G. Campbell, Dean T. Anson, Aaron Ouellett, Benjamin A. Westman, and Edward G. Durbin

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Prediction of magmatic water contents via measurement of H2O in clinopyroxene phenocrysts, Jennifer A. Wade, Terry Plank, Erik H. Hauri, Katherine A. Kelley, Kurt Roggensack, and Mindy Zimmer

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Quantification of co-occurring reaction rates in deep subseafloor sediments, Guizhi Wang, Arthur J. Spivack, Scott Rutherford, Uri Manor, and Steven D'Hondt

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Chlorine stable isotopes and halogen concentrations in convergent margins with implications for the Cl isotopes cycle in the ocean, Wei Wei, Miriam Kastner, and Arthur Spivack

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Reply to comment on: "Chlorine stable isotopes and halogen concentrations in convergent margins with implications for the Cl isotopes cycle in the ocean", Wei Wei, Miriam Kastner, and Arthur Spivack

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Current broadening as a mechanism for anticyclogenesis at the Northwest Corner of the North Atlantic Current, William Woityra and T. Rossby

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A comparison between warm-water fish assemblages of Narragansett Bay and those of Long Island Sound waters, Abby Jane M. Wood, Jeremy S. Collie, and Jonathan A. Hare

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Improving the Ocean Initialization of Coupled Hurricane–Ocean Models Using Feature-Based Data Assimilation, Richard M. Yablonsky and Isaac Ginis

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Mitochondrial cob and cox1 Genes and Editing of the Corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with Special Reference to the Phylogenetic Position of the Genus Dinophysis, Huan Zhang, Debashish Bhattacharya, Lucie Maranda, and Senjie Lin

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Numerical simulation of strong ground motion for the Ms8.0 Wenchuan earthquake of 12 May 2008, Wei Zhang, Yang Shen, and Xiao Fei Chen

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Cross-dependence of finite-frequency compressional waveforms to shear seismic wave speeds, Zhigang Zhang and Yang Shen

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Comment on “Current system east of the Ryukyu Islands” by A. Nagano et al., Xiao-Hua Zhu, Jae-Hun Park, Mark Wimbush, and Cheng-Hao Yang

Manuscripts from 2007

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Characterization of pyroclastic fall and flow deposits from the 1815 eruption of Tambora volcano, Indonesia using ground-penetrating radar, Lewis J. Abrams and Haraldur Sigurdsson

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Dissolution of biogenic ooze over basement edifices in the equatorial Pacific with implications for hydrothermal ventilation of the oceanic crust, Barbara A. Bekins, Arthur J. Spivack, Earl E. Davis, and Larry A. Mayer

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The Operational GFDL Coupled Hurricane–Ocean Prediction System and a Summary of Its Performance, Morris A. Bender, Isaac Ginis, Robert Tuleya, Biju Thomas, and Timothy Marchok

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High water contents in basaltic magmas from Irazú Volcano, Costa Rica, Ezra R. Benjamin, Terry Plank, Jennifer A. Wade, Katherine A. Kelley, Erik H. Hauri, and Guillermo E. Alvarado

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Direct measurements of the convective recycling of the upper troposphere, Timothy H. Bertram, Anne E. Perring, Paul J. Wooldridge, John D. Crounse, Alan J. Kwan, Paul O. Wennberg, Eric Scheuer, Jack Dibb, Melody Avery, Glen Sachse, Stephanie A. Vay, James H. Crawford, Cameron S. McNaughton, Antony Clarke, Kenneth E. Pickering, Henry Fuelberg, Greg Huey, Donald R. Blake, Hanwant B. Singh, Samuel R. Hall, Richard E. Shetter, Alan Fried, Brian G. Heikes, and Ronald C. Cohen

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Radiolytic hydrogen and microbial respiration in subsurface sediments, Carly C. Blair, Steven D'Hondt, Arthur J. Spivack, and Richard H. Kingsley

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The hypothalamic-pituitary-thyroid (HPT) axis in fish and its role in fish development and reproduction, Michael L. Blanton and Jennifer L. Specker