Explore scholarly publications from the Graduate School of Oceanography faculty at the University of Rhode Island.

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Manuscripts from 2006

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Spring phytoplankton bloom and associated lower trophic level food web dynamics on Georges Bank: 1-D and 2-D model studies, Rubao Ji, Changsheng Chen, Peter J.S. Franks, David W. Townsend, Edward G. Durbin, Robert C. Beardsley, R. Gregory Lough, and Robert W. Houghton

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Geochemical correlation of Caribbean Sea tephra layers with ignimbrites in Central America, Benjamin R. Jordan, Haraldur Sigurdsson, Steven N. Carey, Robert Rogers, and Jan Ehrenborg

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A starving majority deep beneath the seafloor, Bo Barker Jørgensen and Steven D'Hondt

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Leg 201 synthesis: Controls on microbial communities in deeply buried sediments, Bo Barker Jørgensen, Steven L. D'Hondt, and D. Jay Miller

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Multiplex Quantitative Real-Time Reverse Transcriptase PCR for F+-Specific RNA Coliphages: a Method for Use in Microbial Source Tracking, Merek Kirs and David C. Smith

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Biological control of the vernal population increase of Calanus finmarchicus on Georges Bank, Xingwen Li, Dennis J. McGillicuddy Jr., Edward G. Durbin, and Peter H. Wiebe

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Quantifying the importance of the atmospheric sink for polychlorinated dioxins and furans relative to other global loss processes, Rainer Lohmann, Elena Jurado, Jordi Dachs, Ulrike Lohmann, and Kevin C. Jones

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Oceanic deep water formation as a sink of persistent organic pollutants, Rainer Lohmann, Elena Jurado, Michael E.Q. Pilson, and Jordi Dachs

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Changes in the Northwest Atlantic circulation for the 1992-95 high NAO period from a numerical model, Yiyong Luo, Mark D. Prater, Edward G. Durbin, and Lewis M. Rothstein

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Taxonomy of Pfiesteria (Dinophyceae), Harold G. Marshall, Paul E. Hargraves, Jo Ann M. Burkholder, Matthew W. Parrow, Malte Elbrächter, Elle H. Allen, Valerie M. Knowlton, Parke A. Rublee, Wayne L. Hynes, Todd A. Egerton, David L. Remington, K. B. Wyatt, Alan J. Lewitus, and Vince C. Henrich

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Comparisons of fast repetition rate fluorescence estimated primary production and 14C uptake by phytoplankton, D. Christopher Melrose, Candace A. Oviatt, John E. O'Reilly, and Mark S. Berman

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Transmission loss in manatee habitats, Jennifer L. Miksis-Olds and James H. Miller

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Formaldehyde distribution over North America: Implications for satellite retrievals of formaldehyde columns and isoprene emission, Dylan B. Millet, Daniel J. Jacob, Solène Turquety, Rynda C. Hudman, Shiliang Wu, Alan Fried, James Walega, Brian G. Heikes, Donald R. Blake, Hanwant B. Singh, Bruce E. Anderson, and Antony D. Clarke

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The Cenozoic palaeoenvironment of the Arctic Ocean, Kathryn Moran, Jan Backman, Henk Brinkhuis, Steven C. Clemens, Thomas Cronin, Gerald R. Dickens, Frédérique Eynaud, Jérôme Gattacceca, Martin Jakobsson, Richard W. Jordan, Michael Kaminski, John King, Nalan Koc, Alexey Krylov, Nahysa Martinez, Jens Matthiessen, David McInroy, Theodore C. Moore, Jonaotaro Onodera, Matthew O'Regan, Heiko Pälike, Brice Rea, Domenico Rio, Tatsuhiko Sakamoto, David C. Smith, Ruediger Stein, Kristen St John, Itsuki Suto, Noritoshi Suzuki, Kozo Takahashi, Mahito Watanabe, Masanobu Yamamoto, John Farrell, Martin Frank, Peter Kubik, and Wilfried Jokat

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Erratum: Arctic hydrology during global warming at the Palaeocene/Eocene thermal maximum (Nature (2006) 442 (671-675)), Mark Pagani, Nikolai Pedentchouk, Matthew Huber, Appy Sluijs, Stefan Schouten, Henk Brinkhuis, Jaap S. Sinninghe Damsté, Gerald R. Dickens, Jan Backman, Steve Clemens, Thomas Cronin, Frédérique Eynaud, Jérôme Gattacceca, Martin Jakobsson, Ric Jordan, Michael Kaminski, John King, Nalân Koc, Nahysa C. Martinez, Jens Matthiessen, David McInroy, Theodore C. Moore, Kathryn Moran, Matthew O'Regan, Jonaotaro Onodera, Heiko Pälike, Brice Rea, Domenico Rio, Tatsuhiko Sakamoto, David C. Smith, Ruediger Stein, Kristen E.K. St. John, Itsuki Suto, Noritoshi Suzuki, Kozo Takahashi, and Mahito Watanabe

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Second‐mode internal tides in the East China Sea deduced from historical hydrocasts and a model, Jae-Hun Park, Magdalena Andres, Paul J. Martin, Mark Wimbush, and D. Randolph Watts

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Near 5-day nonisostatic response of the Atlantic Ocean to atmospheric surface pressure deduced from sub-surface and bottom pressure measurements, Jae Hun Park and D. Randolph Watts

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Internal Tides in the Southwestern Japan/East Sea, Jae-Hun Park and D. Randolph Watts

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Rapid Variability in the Japan/East Sea: Basin Oscillations, Internal Tides, and Near-Inertial Oscillations, Jae-Hun Park, D. Randolph Watts, Mark Wimbush, Jeffrey W. Book, Karen L. Tracey, and Yongsheng Xu

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Modification of surface winds near ocean fronts: Effects of Gulf Stream rings on scatterometer (QuikSCAT, NSCAT) wind observations, Kyung Ae Park, Peter Cornillon, and Daniel L. Codiga

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Relationship between satellite-observed cold water along the Primorye coast and sea ice in the East Sea (the Sea of Japan), Kyung Ae Park, Kuh Kim, Peter C. Cornillon, and Jong Yul Chung

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We are evaporating our coal mines into the air, Michael E.Q. Pilson

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Impact of long-term diagenesis on δ15N of organic matter in marine sediments: Sites 1227 and 1230, Maria G. Prokopenko, Douglas E. Hammond, Arthur Spivack, and Lowell Stott

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Observations of the Subtropical Mode Water Evolution from the Kuroshio Extension System Study, Bo Qiu, Peter Hacker, Shuiming Chen, Kathleen A. Donohue, D. Randolph Watts, Nelson G. Hogg, and Steven R. Jayne

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Modeling Ocean ecosystems the PARADIGM program, Lewis M. Rothstein, John J. Cullen, Mark Abbott, Eric P. Chassignet, Ken Denman, Scott C. Doney, Hugh Ducklow, Katja Fennel, Mick Follows, Dale Haidvogel, Eileen Hofmann, David M. Karl, John Kindle, Ivan Lima, Mathew Maltrud, Chuck McClain, Dennis McGillicuddy, M. Josefina Olascoaga, Yvette Spitz, Jerry Wiggert, and James Yoder

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Characteristics of egg production of the planktonic copepod, Calanus finmarchicus, on Georges Bank: 1994-1999, J. A. Runge, S. Plourde, P. Joly, B. Niehoff, and E. Durbin

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Estimating potential diapause duration in Calanus finmarchicus, Whitley J. Saumweber and Edward G. Durbin

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The 2005 Lake Malawi Scientific Drilling Project, Christopher A. Scholz, Andrew S. Cohen, Thomas C. Johnson, John W. King, and Kathryn Moran

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Paleoclimatic variations in West Africa from a record of late Pleistocene and Holocene lake level stands of Lake Bosumtwi, Ghana, Timothy M. Shanahan, Jonathan T. Overpeck, C. Winston Wheeler, J. Warren Beck, Jeffrey S. Pigati, Michael R. Talbot, Christopher A. Scholz, John Peck, and John W. King

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Marine Investigations of Greece's Santorini Volcanic Field, Haraldur Sigurdsson, Steven Carey, Matina Alexandri, Georges Vougioukalakis, Katherine Croff, Chris Roman, Dimitris Sakellariou, Christos Anagnostou, Grigoris Rousakis, Chrysanti Ioakim, Aleka Goguo, Dionysis Ballas, Thanassis Misaridis, and Paraskevi Nomikou

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Subtropical Arctic Ocean temperatures during the Palaeocene/Eocene thermal maximum, Appy Sluijs, Stefan Schouten, Mark Pagani, Martijn Woltering, Henk Brinkhuis, Jaap S. Sinninghe Damsté, Gerald R. Dickens, Matthew Huber, Gert Jan Reichart, Ruediger Stein, Jens Matthiessen, Lucas J. Lourens, Nikolai Pedentchouk, Jan Backman, Kathryn Moran, Steve Clemens, Thomas Cronin, Frédérique Eynaud, Jérôme Gattacceca, Martin Jakobsson, Ric Jordan, Michael Kaminski, John King, Nalân Koc, Nahysa C. Martinez, David McInroy, Theodore C. Moore, Matthew O'Regan, Jonaotaro Onodera, Heiko Pälike, Brice Rea, Domenico Rio, Tatsuhiko Sakamoto, David C. Smith, Kristen E.K. St John, and Itsuki Suto

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Data report: Dissolved organic carbon in interstitial waters, equatorial Pacific and Peru margin, ODP Leg 201, David C. Smith

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The Sedimentary Environment Below Earth’s Polar Ice Cap as a Microbial Habitat, David C. Smith, Stephanie Forschner-Dancause, David C. Rowley, and Steven D'Hondt

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A versatile and sensitive tritium-based radioassay for measuring hydrogenase activity in aquatic sediments, Bruno Soffientino, Arthur J. Spivack, David C. Smith, Edward B. Roggenstein, and Steven D'Hondt

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Surface wind response to oceanic fronts, Qingtao Song, Peter Cornillon, and Tetsu Hara

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Determination of in situ methane based on analysis of void gas, Arthur J. Spivack, Craig McNeil, Nils G. Holm, and Kai Uwe Hinrichs

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Evaluation of a lifetime-based optode to measure oxygen in aquatic systems, Anders Tengberg, Jostein Hovdenes, Henrik Johan Andersson, Olivier Brocandel, Robert Diaz, David Hebert, Tony Arnerich, Christian Huber, Arne Körtzinger, Alexis Khripounoff, Francisco Rey, Christer Rönning, Jens Schimanski, Stefan Sommer, and Achim Stangelmayer

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Synoptic maps of temperature and velocity within the Subantarctic Front south of Australia, K. L. Tracey, D. R. Watts, C. S. Meinen, and D. S. Luther

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Adaptation for water balance in the partial gastrointestinal tract of summer flounder, Philip A. Veillette, Jason P. Breves, Danielle R. Reardon, and Jennifer L. Specker

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Currents, Eddies, and a "Fish Story" in the Southwestern Japan/East Sea, D. Randolph Watts, Mark Wimbush, Karen L. Tracey, William J. Teague, Jae-Hun Park, Douglas A. Mitchell, Jong-Hwan Yoon, Moon-Sik Suk, and Kyung-Il Chang

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Geochemical cycling of fluorine, chlorine, bromine, and boron and implications for fluid-rock reactions in Mariana forearc, South Chamorro Seamount, ODP Leg 195, Wei Wei, Miriam Kastner, Annette Deyhle, and Arthur J. Spivack

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Cold-water coral mounds revealed, Trevor Williams, Akihiro Kano, Timothy Ferdelman, Jean Pierre Henriet, Kohei Abe, Miriam S. Andres, Morten Bjerager, Emily L. Browning, Barry A. Cragg, Ben De Mol, Boris Dorschel, Anneleen Foubert, Tracy D. Frank, Yuji Fuwa, Philippe Gaillot, Jamshid J. Gharib, Jay M. Gregg, Veerle Ann Ida Huvenne, Philippe Léonide, Xianghui Li, Kai Mangelsdorf, Akiko Tanaka, Xavier Monteys, Ivana Novosel, Saburo Sakai, Vladimir A. Samarkin, Keiichi Sasaki, Arthur J. Spivack, Chizuru Takashima, and Jürgen Titschack

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Zooplankton distributions and transport across the northeastern tidal front of Georges Bank, Karen F. Wishner, Dawn M. Outram, and David S. Ullman

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Using AXBTS to improve the performance of coupled hurricane-ocean models, Richard M. Yablonsky, Isaac Ginis, Eric W. Uhlhorn, and Aleksandr Falkovich

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Frequency-dependent crustal correction for finite-frequency seismic tomography, Ting Yang and Yang Shen

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Upper mantle structure beneath the Azores hotspot from finite-frequency seismic tomography, Ting Yang, Yang Shen, Suzan van der Lee, Sean C. Solomon, and Shu Huei Hung

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What have we learned about ocean variability from satellite ocean color imagers?, James A. Yoder and Maureen A. Kennelly

Manuscripts from 2005

Determination of trinitrotoluenes and products of their biotransformations using liquid chromatography and capillary electrophoresis, Jitka Bečanová, Zdeněk Šimek, and Zdeněk Friedl

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Dissolved oxygen saturation controls PAH biodegradation in freshwater estuary sediments, T. J. Boyd, M. T. Montgomery, J. K. Steele, J. W. Pohlman, S. R. Reatherford, B. J. Spargo, and D. C. Smith

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Cortisol stress response of juvenile winter flounder (Pseudopleuronectes americanus, Walbaum) to predators, Jason P. Breves and Jennifer L. Specker

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Late-Quaternary lowstands of lake Bosumtwi, Ghana: Evidence from high-resolution seismic-reflection and sediment-core data, Keely Brooks, Christopher A. Scholz, John W. King, John Peck, Jonathan T. Overpeck, James M. Russell, and Philip Y.O. Amoako

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Zooplankton grazing impacts on Alexandrium spp. in the nearshore environment of the Gulf of Maine, Robert G. Campbell, Gregory J. Teegarden, Allan D. Cembella, and Edward G. Durbin

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Understanding the physical behavior of volcanoes, Steven N. Carey

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Networked acoustic modems for real-time data telemetry from distributed subsurface instruments in the coastal ocean: Application to array of bottom-mounted ADCPs, Daniel L. Codiga, Joseph A. Rice, Paul A. Baxley, and David Hebert

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Data access interoperability within IOOS, Peter Cornillon, John Caron, Thomas Burk, and Daniel Holloway

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Consequences of the cretaceous/paleogene mass extinction for marine ecosystems, Steven D'Hondt

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Ocean Data Assimilation and Initialization Procedure for the Coupled GFDL/URI Hurricane Prediction System, Aleksandr Falkovich, Isaac Ginis, and Stephen Lord

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Reverberation effects in acoustical resonators used for bubble measurements, David M. Farmer, Svein Vagle, and Donald Booth

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Spatial and temporal distributions of surface temperature and chlorophyll in the Gulf of Maine during 1998 using SeaWiFS and AVHRR imagery, Mary Francis Fox, Dana R. Kester, and James A. Yoder

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The rates of transport and fates of petroleum hydrocarbons in a controlled marine ecosystem and a note on analytical variability, Juanita N. Gearing, Patrick J. Gearing, Terry Wade, James G. Quinn, Harry B. McCarty, John Farrington, and Richard F. Lee

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Depositional history of organic contaminants in Narragansett Bay, Rhode Island, USA, Paul C. Hartmann, James G. Quinn, Robert W. Cairns, and John W. King

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The structure of the coastal density front at the outflow of Long Island Sound during spring 2002, A. R. Kirincich and D. Hebert

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Direct measurements of the mean flow and eddy kinetic energy structure of the upper ocean circulation in the NE Atlantic, Øyvind Knutsen, Harald Svendsen, Svein Øterhus, Tom Rossby, and Bogi Hansen

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The ICDP Lake Bosumtwi Drilling Project: A First Report, Christian Koeberl, John Peck, John W. King, Bernd Milkereit, Jonathan Overpeck, and Christopher Scholz

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Momentum flux budget analysis of wind-driven air-water interfaces, Tobias Kukulka and Tetsu Hara

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High-resolution historical records from Pettaquamscutt River basin sediments: 1. 210Pb and varve chronologies validate record of 137Cs released by the Chernobyl accident, Ana Lúcia Lima, J. Bradford Hubeny, Christopher M. Reddy, John W. King, Konrad A. A. Hughen, and Timothy I. Eglinton

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On the connection between South Pacific subtropical spiciness anomalies and decadal equatorial variability in an ocean general circulation model, Yiyong Luo, Lewis M. Rothstein, Rong Hua Zhang, and Antonio J. Busalacchi

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Hydrogen peroxide method intercomparision study in seawater, Gary W. Miller, Chris A. Morgan, David J. Kieber, D. Whitney King, Julie A. Snow, Brian G. Heikes, Kenneth Mopper, and James J. Kiddle

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The Dok Cold Eddy, D. A. Mitchell, W. J. Teague, M. Wimbush, D. R. Watts, and G. G. Sutyrin

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Upper circulation patterns in the Ulleung Basin, D. A. Mitchell, D. R. Watts, M. Wimbush, W. J. Teague, K. L. Tracey, J. W. Book, K. I. Chang, M. S. Suk, and J. H. Yoon

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Primary production calculations in the Mid-Atlantic Bight, including effects of phytoplankton community size structure, Colleen B. Mouw and James A. Yoder

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A critical evaluation of the boron isotope-pH proxy: The accuracy of ancient ocean pH estimates, Mark Pagani, Damien Lemarchand, Arthur Spivack, and Jérôme Gaillardet

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Near-inertial oscillations interacting with mesoscale circulation in the southwestern Japan/East Sea, Jae Hun Park and D. Randolph Watts

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Response of the southwestern Japan/East Sea to atmospheric pressure, Jae Hun Park and D. Randolph Watts

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A Multi-Index GEM Technique and Its Application to the Southwestern Japan/East Sea, Jae-Hun Park, D. Randolph Watts, Karen L. Tracey, and Douglas A. Mitchell

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Wind and bathymetric forcing of the annual sea surface temperature signal in the East (Japan) Sea, Kyung Ae Park, Jong Yul Chung, Kuh Kim, and Peter C. Cornillon

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Observations of the Faroe Bank Channel overflow using bottom-following RAFOS floats, Mark D. Prater and Tom Rossby

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Sustainability in single-species population models, Terrance J. Quinn and Jeremy S. Collie

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Interannual variations in upper-ocean transport by the Gulf Stream and adjacent waters between New Jersey and Bermuda, T. Rossby, C. N. Flagg, and K. Donohue

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On variations in static stability along Lagrangian trajectories, T. Rossby and Mark D. Prater

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U.S. ocean fish recovery: Staying the course, Carl Safina, Andrew A. Rosenberg, Ransom A. Myers, Terrance J. Quinn, and Jeremy S. Collie

Morphology and formation of glassy volcanic ash from the August 12-15, 1991 eruption of Hudson volcano, Chile, Roberto A. Scasso and Steven Carey

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Directionality and crest length statistics of steep waves in open ocean waters, Nicholas Scott, Tetsu Hara, Paul A. Hwang, and Edward J. Walsh

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Observations of Steep Wave Statistics in Open Ocean Waters, Nicholas Scott, Tetsu Hara, Edward J. Walsh, and Paul A. Hwang

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Discrete eddies in the northern North Atlantic as observed by looping RAFOS floats, D. R. Shoosmith, P. L. Richardson, A. S. Bower, and H. T. Rossby

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The Bosporus Strait: A special place in the history of Oceanography, Bruno Soffientino and Michael E.Q. Pilson

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Water quality modeling in the Rio Chone estuary, D. L. Stram, C. R. Kincaid, and D. E. Campbell

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Observed deep circulation in the Ulleung Basin, W. J. Teague, K. L. Tracey, D. R. Watts, J. W. Book, K. I. Chang, P. J. Hogan, D. A. Mitchell, M. S. Suk, M. Wimbush, and J. H. Yoon

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On the dense bubble clouds and near bottom turbulence in the surf zone, Svein Vagle, Peter Chandler, and David M. Farmer

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Light absorption and scattering by particles and CDOM at the New England shelfbreak front, Robert D. Vaillancourt, John Marra, Laura Prieto, Robert W. Houghton, Burke Hales, and Dave Hebert

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Osmoregulatory physiology of pyloric ceca: Regulated and adaptive changes in chinook salmon, Philip A. Veillette, Ronald J. White, Jennifer L. Specker, and Graham Young

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Are midwater shrimp trapped in the craters of submarine volcanoes by hydrothermal venting?, Karen F. Wishner, Jason R. Graff, Joel W. Martin, S. Carey, H. Sigurdsson, and B. A. Seibel

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P-wave velocity structure of the crust and uppermost mantle beneath Iceland from local earthquake tomography, Ting Yang and Yang Shen

Manuscripts from 2004

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The Cretaceous-Tertiary extinction: Modeling carbon flux and ecological response, J. Brad Adams, Michael E. Mann, and Steven D'Hondt

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Direct Observations of Along-Isopycnal Upwelling and Diapycnal Velocity at a Shelfbreak Front, John A. Barth, Dave Hebert, Andrew C. Dale, and David S. Ullman

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Marine boundary layer dust and pollutant transport associated with the passage of a frontal system over eastern Asia, Timothy S. Bates, Patricia K. Quinn, Derek J. Coffman, David S. Covert, Theresa L. Miller, James E. Johnson, Gregory R. Carmichael, Itsushi Uno, Sergio A. Guazzotti, David A. Sodeman, Kimberly A. Prather, Monica Rivera, Lynn M. Russell, and John T. Merrill

A summary of upgrades to the operational GFDL Hurricane model for 2003, Morris A. Bender, Timothy Marchok, Isaac Ginis, Biju Thomas, Robert E. Tuleya, and Hua Lu Pan

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Thermal, hydrous, and mechanical states of the mantle transition zone beneath southern Africa, John Blum and Yang Shen

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Spatial variability in SeaWiFS imagery of the South Atlantic bight as evidenced by gradients (fronts) in chlorophyll a and water-leaving radiance, Paula S. Bontempi and James A. Yoder

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Circulation and currents in the southwestern East/Japan Sea: Overview and review, K. I. Chang, W. J. Teague, S. J. Lyu, H. T. Perkins, D. K. Lee, D. R. Watts, Y. B. Kim, D. A. Mitchell, C. M. Lee, and K. Kim