Publications from the faculty and research scientists of the Graduate School of Oceanography.
Manuscripts from 2003
The front on the Northern Flank of Georges Bank in spring: 1. Tidal and subtidal variability, Andrew C. Dale, David S. Ullman, John A. Barth, and Dave Hebert
An assessment of western North Pacific ozone photochemistry based on springtime observations from NASA's PEM-West B (1994) and TRACE-P (2001) field studies, D. D. Davis, G. Chen, J. H. Crawford, S. Liu, D. Tan, S. T. Sandholm, P. Jing, D. M. Cunnold, B. DiNunno, E. V. Browell, W. B. Grant, M. A. Fenn, B. E. Anderson, J. D. Barrick, G. W. Sachse, S. A. Vay, C. H. Hudgins, M. A. Avery, B. Lefer, R. E. Shetter, B. G. Heikes, D. R. Blake, N. Blake, Y. Kondo, and S. Oltmans
ODP Leg 201 explores microbial life in deeply buried marine sediments off Peru, Steven D'Hondt, Bo Barker Jørgensen, and D. Jay Miller
A near-synoptic survey of the Southwest Indian Ocean, Kathleen A. Donohue and John M. Toole
Interannual variation in phytoplankton blooms and zooplankton productivity and abundance in the Gulf of Maine during winter, Edward G. Durbin, Robert G. Campbell, Maria C. Casas, Mark D. Ohman, Barbara Niehoff, Jeffrey Runge, and Melissa Wagner
Summary of measurement intercomparisons during TRACE-P, F. L. Eisele, L. Mauldin, C. Cantrell, M. Zondlo, E. Apel, A. Fried, J. Walega, R. Shetter, B. Lefer, F. Flocke, A. Weinheimer, M. Avery, S. Vay, G. Sachse, J. Podolske, G. Diskin, J. D. Barrick, H. B. Singh, W. Brune, H. Harder, M. Martinez, A. Bandy, D. Thornton, Brian G. Heikes, Y. Kondo, D. Riemer, S. Sandholm, D. Tan, R. Talbot, and Jack Dibb
Budget of tropospheric ozone during TOPSE from two chemical transport models, L. K. Emmons, P. Hess, A. Klonecki, X. Tie, L. Horowitz, J. F. Lamarque, D. Kinnison, G. Brasseur, E. Atlas, E. Browell, C. Cantrell, F. Eisele, R. L. Mauldin, J. Merrill, B. Ridley, and R. Shetter
Coupled evolution of BrOx‐ClOx‐HOx‐NOx chemistry during bromine‐catalyzed ozone depletion events in the arctic boundary layer, M. J. Evans, D. J. Jacobs, C. A. Cantrell, F. Eisele, F. Flocke, A. Fried, R. L. Mauldin, B. A. Ridley, B. Wert, R. Talbot, D. Blake, Brian G. Heikes, J. Snow, J. Walega, A. J. Weinheimer, and J. Dibb
Coupled seismic slip on adjacent oceanic transform faults, Donald W. Forsyth, Yingjie Yang, Maria-Daphne Mangriotis, and Yang Shen
Tunable diode laser measurements of formaldehyde during the TOPSE 2000 study: Distributions, trends, and model comparisons, Alan Fried, Yuhang Wang, Chris Cantrell, Bryan Wert, James Walega, Brian Ridley, Elliot Atlas, Rick Shetter, Barry Lefer, M. T. Coffey, Jim Hannigan, Donald Blake, Nicola Blake, Simone Meinardi, bob Talbot, Jack Dibb, Eric Scheuer, Oliver Wingenter, Julie Snow, Brian G. Heikes, and Dieter Ehhalt
Trans-Atlantic responses of Calanus finmarchicus populations to basin-scale forcing associated with the North Atlantic Oscillation, C. H. Greene, A. J. Pershing, A. Conversi, B. Planque, C. Hannah, D. Sameoto, E. Head, P. C. Smith, P. C. Reid, J. Jossi, D. Mountain, M. C. Benfield, P. H. Wiebe, and E. Durbin
Melting, dehydration, and the dynamics of off-axis plume-ridge interaction, Paul S. Hall and Chris Kincaid
Observation of hydrodynamic modulation of gravity-capillary waves by dominant gravity waves, Tetsu Hara, Kurt A. Hanson, Erik J. Bock, and B. Mete Uz
Observation of nonlinear effects in ocean surface wave frequency spectra, Tetsu Hara and Andrey V. Karachintsev
Differential mixing by breaking internal waves, Dave Hebert and Barry R. Ruddick
Mobile fishing gear reduces benthic megafaunal production on Georges Bank, Jerome M. Hermsen, Jeremy S. Collie, and Page C. Valentine
Laboratory models of the thermal evolution of the mantle during rollback subduction, C. Kincaid and R. W. Griffiths
Role of back arc spreading in circulation and melting at subduction zones, Chris Kincaid and Paul S. Hall
Spatial and temporal variability in flow at the mouth of Narragansett Bay, Chris Kincaid, Robert A. Pockalny, and Linda M. Huzzey
Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176), Konstantinos Ar Kormas, David C. Smith, Virginia Edgcomb, and Andreas Teske
The Labrador Sea Deep Convection Experiment data collection, G. Krahmann, M. Visbeck, W. Smethie, Eric A. D'Asaro, Peter B. Rhines, R. Allyn Clarke, John Lazier, Russ E. Davis, Pearn P. Niiler, Peter S. Guest, Jens Meincki, G. W. Kent Moore, Robert S. Pickart, W. Brechner Owens, Mark D. Prater, Ian A. Renfrew, and Friedrich A. Schott
Magnetic record of Lake Baikal sediments: Chronological and paleoclimatic implication for the last 6.7 Myr, Vadim A. Kravchinsky, Mikhail A. Krainov, Michael E. Evans, John A. Peck, John W. King, Mikhail I. Kuzmin, Hideo Sakai, Takayoshi Kawai, and Douglas F. Williams
Warm water pathways, transports, and transformations in the northwestern North Atlantic and their modification by cold air outbreaks, Yiyong Luo, Huai Min Zhang, Mark D. Prater, and Lewis M. Rothstein
Agulhas cyclones, J. R.E. Lutjeharms, O. Boebel, and H. T. Rossby
Characteristics, distribution and persistence of thin layers over a 48 hour period, M. A. McManus, A. L. Alldredge, A. H. Barnard, E. Boss, J. F. Case, T. J. Cowles, P. L. Donaghay, L. B. Eisner, D. J. Gifford, C. F. Greenlaw, C. M. Herren, D. V. Holliday, D. Johnson, S. MacIntyre, D. M. McGehee, T. R. Osborn, M. J. Perry, R. E. Pieper, J. E.B. Rines, D. C. Smith, J. M. Sullivan, M. K. Talbot, M. S. Twardowski, A. Weidemann, and J. R. Zaneveld
Curators of sea floor and lakebed samples celebrate 25 years of service, Alan Mix, Bobbi Conard, Jim Broda, Steve Carey, John Firth, Tom Janecek, Rusty Lotti-Bond, Carla Moore, Richard Norris, and Doug Schnur-Renberger
Numerical Simulation of Sea Surface Directional Wave Spectra under Hurricane Wind Forcing, Il-Ju Moon, Isaac Ginis, Tetsu Hara, Hendrik L. Tolman, C. W. Wright, and Edward J. Walsh
Does 234Th/238U disequilibrium provide an accurate record of the export flux of particulate organic carbon from the upper ocean?, S. B. Moran, S. E. Weinstein, H. N. Edmonds, J. N. Smith, R. P. Kelly, M. E.Q. Pilson, and W. G. Harrison
Structure and Generation of Turbulence at Interfaces Strained by Internal Solitary Waves Propagating Shoreward over the Continental Shelf, J. N. Moum, David Farmer, W. D. Smyth, L. Armi, and S. Vagle
A century of fishing and fish fluctuations in Narragansett Bay, Candace Oviatt, Steven Olsen, Mark Andrews, Jeremy Collie, Timothy Lynch, and Kenneth Raposa
A Correction Concerning Marsigli, Michael E.Q. Pilson
Ozone depletion events observed in the high latitude surface layer during the TOPSE aircraft program, Brian A. Ridley, Brian G. Heikes, Julie A. Snow, and et al
Current switching as the cause of rapid warming at the end of the last Glacial Maximum and Younger Dryas, T. Rossby and Johan Nilsson
Chemical composition of Asian continental outflow over the western Pacific: Results from Transport and Chemical Evolution over the Pacific (TRACE‐P), R. S. Russo, R. W. Talbot, J. E. Dibb, E. Scheuer, G. Seid, C. E. Jordan, H. E. Fuelberg, G. W. Sachse, M. A. Avery, S. A. Vay, D. R. Blake, N. J. Blake, E. Atlas, A. Fried, S. T. Sandholm, D. Tan, H. B. Singh, J. Snow, and Brian G. Heikes
Influence of dust and sulfate aerosols on ocean color spectra and chlorophyll a concentrations derived from SeaWiFS off the U.S. east coast, Stephanie E. Schollaert, James A. Yoder, John E. O'Reilly, and Douglas L. Hestphal
Inter-annual variability of phytoplankton chlorophyll, Stephanie Schollaert, Tom Rossby, and James A. Yoder
Paleolimnology of Lake Tanganyika, East Africa, over the past 100 k yr, Christopher A. Scholz, John W. King, Geoffrey S. Ellis, Peter K. Swart, J. Curt Stager, and Steven M. Colman
Effects of surface heat flux‐induced sea surface temperature changes on tropical cyclone intensity, Weixing Shen and Isaac Ginis
Seismic evidence for accumulated oceanic crust above the 660-km discontinuity beneath southern Africa, Yang Shen and John Blum
Seismological evidence for a mid-mantle discontinuity beneath Hawaii and Iceland, Yang Shen, Cecily J. Wolfe, and Sean C. Solomon
Winter-spring evolution and variability of HOx reservoir species, hydrogen peroxide, ad methyl hydroperoxide, in the northern middle to high latitudes, Julie A. Snow, Brian G. Heikes, John T. Merrill, Anthony J. Wimmers, Jennie L. Moody, and Christopher A. Cantrell
Age-dependent changes in the response of the stomach to thyroidal signaling in developmentally arrested larval summer flounder, Bruno Soffientino and Jennifer L. Specker
Methodology for estradiol treatment in marine larval and juvenile fish: Uptake and clearance in summer flounder, Jennifer L. Specker and Mary Kelly Chandlee
Comment on: Tonarini et al. (2003), Journal, Volume 27 (1), pp. 21-39 and Gonfiantini et al. (2003), Journal, Volume 27 (1), pp. 41-57, Arthur J. Spivack
Photochemistry in the arctic free troposphere: NOx budget and the role of odd nitrogen reservoir recycling, Craig Stroud, Sasha Madronich, Elliot Atlas, Brian Ridley, Frank Flocke, Andy Weinheimer, Bob Talbot, Alan Fried, Brian Wert, Richard Shetter, Barry Lefer, Mike Coffey, Brian Heikes, and Don Blake
Baroclinic eddy interactions with continental slopes and shelves, G. G. Sutyrin, G. Dail Rowe, L. M. Rothstein, and I. Ginis
A temperature- and size-dependent model of sand shrimp (Crangon septemspinosa) predation on juvenile winter flounder (Pseudopleuronectes americanus), David L. Taylor and Jeremy S. Collie
Effect of temperature on the functional response and foraging behavior of the sand shrimp Crangon septemspinosa preying on juvenile winter flounder Pseudopleuronectes americanus, David L. Taylor and Jeremy S. Collie
Phycotoxin accumulation in zooplankton feeding on Alexandrium fundyense - Vector or sink, Gregory J. Teegarden, Allan D. Cembella, Carissa L. Capuano, Stacy H. Barron, and Edward G. Durbin
Bubble clouds and Langmuir circulation: Observations and models, S. A. Thorpe, T. R. Osborn, D. M. Farmer, and S. Vagle
The front on the Northern Flank of Georges Bank in spring: 2. Cross‐frontal fluxes and mixing, David S. Ullman, Andrew C. Dale, Dave Hebert, and John A. Barth
Sedimentary and tectonic evolution of a trench-slope basin in the Nankai subduction zone of southwest Japan, Michael B. Underwood, Gregory F. Moore, Asahiko Taira, Adam Klaus, Moyra E.J. Wilson, Christopher L. Fergusson, Satoshi Hirano, Joan Steurer, Keir Becker, Luann Becker, Babette Boeckel, Barry Cragg, Allison Dean, Pierre Henry, Toshio Hisamitsu, Sabine Hunze, Miriam Kastner, Alex Maltman, Julia Morgan, Yuki Murakami, Demian Saffer, Mario Sánchez-Gómez, Elizabeth Screaton, David Smith, Arthur Spivak, Harold Tobin, and Kohtaro Ujiie
Laboratory observations of gravity-capillary waves under transient wind forcing, B. Mete Uz, Tetsu Hara, Erik J. Bock, and Mark A. Donelan
Springtime photochemistry at northern mid and high latitudes, Yuhang Wang, Brian Ridley, Alan Fried, Christopher Cantrell, Douglas Davis, Gao Chen, Julie Snow, Brian G. Heikes, Robert Talbot, Jack Dibb, Frank Flocke, Andrew Weinheimer, Nicola Blake, Donald Blake, Richard Shetter, Barry Lefer, Elliot Atlas, Michael Coffey, Jim Walega, and Brian Wert
Observations and modelling of the tidal bottom boundary layer on the southern flank of Georges bank, Sandra R. Werner, Robert C. Beardsley, Steven J. Lentz, David L. Hebert, and Neil S. Oakey
Biological Signature of Scotian Shelf Water Crossovers on Georges Bank During Spring 1997, Karen F. Wishner, Dian J. Gifford, Barbara K. Sullivan, James J. Bisagni, Dawn M. Outram, and Donna E. Van Keuren
Seasonal and ENSO variability in global ocean phytoplankton chlorophyll derived from 4 years of SeaWiFS measurements, James A. Yoder and Maureen A. Kennely
Manuscripts from 2002
SEASONAL DISTRIBUTION AND ABUNDANCE OF FISHES AND DECAPOD CRUSTACEANS IN A CAPE COD ESTUARY, Kenneth W. Able, Michael P. Fahay, Kenneth L. Heck Jr., Charles T. Roman, Mark A. Lazzari, and Susan C. Kaiser
Occurrence and mechanisms of formation of a dramatic thin layer of marine snow in a shallow Pacific fjord, Alice L. Alldredge, Timothy J. Cowles, Sally MacIntyre, Jan E. B. Rines, Percy L. Donaghay, Charles F. Greenlaw, D. V. Holliday, Margaret M. Dekshenieks, James M. Sullivan, and J. Ronald V. Zaneveld
Stratified flow over topography: Bifurcation fronts and transition to the uncontrolled state, Laurence Armi and David Farmer
Multiscale measurements of ocean wave breaking probability, Michael L. Banner, Johannes R. Gemmrich, and David M. Farmer
Directly measured mid-depth circulation in the northeastern North Atlantic Ocean, A. S. Bower, B. Le Cann, T. Rossby, W. Zenk, J. Gould, K. Speer, P. L. Richardson, M. D. Prater, and H. M. Zhang
Modeling phytoplankton production: problems with the Eppley curve and an empirical alternative, Mark J. Brush, John W. Brawley, Scott W. Nixon, and James N. Kremer
Direct measurements of light attenuation by epiphytes on eelgrass Zostera marina, Mark J. Brush and Scott W. Nixon
Comparison of algorithms for estimating ocean primary production from surface chlorophyll, temperature, and irradiance, Janet Campbell, David Antoine, Robert Armstrong, Kevin Arrigo, William Balch, Richard Barber, Michael Behrenfeld, Robert Bidigare, James Bishop, Mary-Elena Carr, Wayne Esaias, Paul Falkowski, Nicholas Hoepffner, Richard Iverson, David Keifer, Steven Lohrenz, John Marra, Andre Morel, John Ryan, Vladimir Vederinkov, Kirk Waters, Charles Yentsch, and James A. Yoder
A Critical Evaluation of Interlaboratory Data on Total, Elemental, and Isotopic Carbon in the Carbonaceous Particle Reference Material, NIST SRM 1649a, L. A. Currie, B. A. Benner Jr., J. D. Kessler, D. R. Klinedinst, G. A. Klouda, J. V. Marolf, J. F. Slater, S. A. Wise, H. Cachier, R. Cary, J. C. Chow, J. Watson, E. R. M. Druffel, C. A. Masiello, T. I. Eglinton, A. Pearson, C. M. Reddy, Ö. Gustafsson, James G. Quinn, P. C. Hartmann, J. I. Hedges, K. M. Prentice, T. W. Kirchstetter, T. Novakow, H. Puxbaum, and H. Schmid
Deep water in the late Maastrichtian ocean, Steven D'Hondt and Michael A. Arthur
Metabolic activity of subsurface life in deep-sea sediments, Steven D'Hondt, Scott Rutherford, and Arthur J. Spivack
Exploration of the marine subsurface biosphere, Steven D'Hondt, David C. Smith, and Arthur J. Spivack
Volume transport and property distributions of the Mozambique Channel, Steven F. DiMarco, Piers Chapman, Worth D. Nowlin, Peter Hacker, Kathleen Donohue, Mark Luther, Gregory C. Johnson, and John Toole
International geophysics series, Renata Dmowska, James R. Holton, and H. Thomas Rossby
Equatorial Pacific Subsurface Countercurrents: A Model–Data Comparison in Stream Coordinates, Kathleen A. Donohue, Eric Firing, G. Dail Rowe, Akio Ishida, and Humio Mitsudera
North Atlantic right whales, Eubalaena glacialis, exposed to paralytic shellfish poisoning (PSP) toxins via a zooplankton vector, Calanus finmarchicus, Edward Durbin, Gregory Teegarden, Robert Campbell, Allan Cembella, Mark F. Baumgartner, and Bruce R. Mate
Wave Kinematics at High Sea States, David Farmer, Li Ding, Donald Booth, and Martin Lohmann
Tilting separation flows: A mechanism for intense vertical mixing in the coastal ocean, D. Farmer, R. Pawlowicz, and R. Jiang
Metamorphosis in summer flounder: Manipulation of thyroid status to synchronize settling behavior, growth, and development, Steven Gavlik, Melissa Albino, and Jennifer L. Specker
On internal hydraulics with entrainment, Frank Gerdes, Chris Garrett, and David Farmer
NOAA-NASA Coastal Zone Color Scanner Reanalysis Effort, Watson W. Gregg, Margarita E. Conkright, John E. O'Reilly, Frederick S. Patt, Menghua H. Wang, and James A. Yoder
Wind forcing in the equilibrium range of wind-wave spectra, Tetsu Hara and Stephen E. Belcher
Routes and rates of larval fish transport from the southeast to the northeast United States continental shelf, Jonathan A. Hare, James H. Churchill, Robert K. Cowen, Thomas J. Berger, Peter C. Cornillon, Paul Dragos, Scott M. Glenn, John J. Govoni, and Thomas N. Lee
The ebridian flagellates Ebria and Hermesinum, Paul E. Hargraves
Potentially toxic or harmful microalgae from the northeast coast, Paul E. Hargraves and Lucie Maranda
Atmospheric methanol budget and ocean implication, Brian G. Heikes, Wonil Chang, Michael E.Q. Pilson, Elijah Swift, Hanwant B. Singh, Alex Guenther, Daniel J. Jacob, Brendan D. Field, Ray Fall, Daniel Reimer, and Larry Brand
Effects of pH on coastal marine phytoplankton, Kenneth R. Hinga
Modification of marine habitats by trawling activities: Prognosis and solutions, Michel J. Kaiser, Jeremy S. Collie, Stephen J. Hall, Simon Jennings, and Ian R. Poiner
Uplift-driven expansion delayed by middle Holocene desiccation in Lake Winnipeg, Manitoba, Canada, C. F.M. Lewis, D. L. Forbes, B. J. Todd, E. Nielsen, L. H. Thorleifson, P. J. Henderson, I. McMartin, T. W. Anderson, R. N. Betcher, W. M. Buhay, S. M. Burbidge, C. J. Schröder-Adams, J. W. King, K. Moran, C. Gibson, C. A. Jarrett, H. J. Kling, W. L. Lockhart, W. M. Last, G. L.D. Matile, J. Risberg, C. G. Rodrigues, A. M. Telka, and R. E. Vance
Morphology, phylogeny and taxonomy of species within the Pseudo-nitzschia americana complex (Bacillariophyceae) with descriptions of two new species, Pseudo-nitzschia brasiliana and Pseudo-nitzschia linea, Nina Lundholm, Grethe Rytter Hasle, Greta A. Fryxell, and Paul E. Hargraves
Using fractal analysis to quantitatively characterize the shapes of volcanic particles, Anton Maria and Steven Carey
Sources of upper tropospheric HOx over the South Pacific Convergence Zone: A case study, Céline Mari, Carine Saüt, Daniel J. Jacob, François Ravetta, Bruce Anderson, Melody A. Avery, Donald R. Blake, William H. Brune, Ian Faloona, G. L. Gregory, Brian G. Heikes, Glen W. Sachse, Scott T. Sandholm, Hanwant B. Singh, Robert W. Talbot, David Tan, and Stephanie Vay
On the relative role of convection, chemistry, and transport over the South Pacific Convergence Zone during PEM-Tropics B: A case study, Céline Mari, Carine Saüt, Daniel J. Jacob, Amanda Staudt, Melody A. Avery, William H. Brune, Ian Faloona, Brian G. Heikes, Glen W. Sachse, Scott T. Sandholm, Hanwant B. Singh, and David Tan
Combining Inverted Echo Sounder and Horizontal Electric Field Recorder Measurements to Obtain Absolute Velocity Profiles, Christopher S. Meinen, Douglas S. Luther, D. Randolph Watts, Karen L. Tracey, Alan D. Chave, and James Richman
Captive dolphins, Tursiops truncatus, develop signature whistles that match acoustic features of human-made model sounds, Jennifer L. Miksis, Peter L. Tyack, and John R. Buck
Radiatively driven convection in ice-covered lakes: Observations, scaling, and a mixed layer model, Dmitrii Mironov, Arkady Terzhevik, Georgy Kirillin, Tobias Jonas, Joakim Malm, and David Farmer
Bacterial degradation of polycyclic aromatic hydrocarbons in surface sediments of coastal ecosystems, Michael T. Montgomery, Chris L. Osburn, Thomas J. Boyd, Sheila Reatherford, and David C. Smith
Bacterial production stimulated across the zone of influence of a ground water circulation well in a BTEX-contaminated aquifer, Michael T. Montgomery, Barry J. Spargo, James G. Mueller, Richard B. Coffin, David C. Smith, and Thomas J. Boyd
On birth and death in the sea, Mark D. Ohman, Jeffrey A. Runge, Edward G. Durbin, David B. Field, and Barbara Niehoff
Annual primary production in Narragansett Bay with no bay-wide winter-spring phytoplankton bloom, C. Oviatt, A. Keller, and L. Reed
Stability‐induced modification of sea surface winds over Gulf Stream rings, Kyung-Ae Park and Peter C. Cornillon
Thin layers and camouflage: hidden Pseudo-nitzschia spp. (Bacillariophyceae) populations in a fjord in the San Juan Islands, Washington, USA, J. E. B. Rines, Percy L. Donaghay, M. M. Dekshenieks, J. M. Sullivan, and M. S. Twardowski
Hurricane effects on ocean salinity, Evan J. Robertson and Isaac Ginis