Explore scholarly publications from the Graduate School of Oceanography faculty at the University of Rhode Island.

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Manuscripts from 2013

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Microbial activity in the marine deep biosphere: progress and prospects, Beth N. Orcutt, Douglas E. LaRowe, Jennifer F. Biddle, Frederick S. Colwell, Brian T. Glazer, Brandi Kiel Reese, John B. Kirkpatrick, Laura L. Lapham, Heath J. Mills, Jason B. Sylvan, Scott D. Wankel, and C. Geoff Wheat

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Effects of Kuroshio intrusions on nonlinear internal waves in the South China Sea during winter, Jae Hun Park and David Farmer

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Heterogeneities from the first 100 million years recorded in deep mantle noble gases from the Northern Lau Back-arc Basin, Maria K. Peto, Sujoy Mukhopadhyay, and Katherine A. Kelley

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Why do mafic arc magmas contain ~4wt% water on average?, Terry Plank, Katherine A. Kelley, Mindy M. Zimmer, Erik H. Hauri, and Paul J. Wallace

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The stable vanadium isotope composition of the mantle and mafic lavas, J. Prytulak, S. G. Nielsen, D. A. Ionov, A. N. Halliday, J. Harvey, K. A. Kelley, Y. L. Niu, D. W. Peate, K. Shimizu, and K. W.W. Sims

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The challenges of using polyethylene passive samplers to determine dissolved concentrations of parent and alkylated PAHs under cold and saline conditions, Pamela J. Reitsma, Dave Adelman, and Rainer Lohmann

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Diagenetic aluminum uptake into diatom frustules and the preservation of diatom-bound organic nitrogen, Haojia Ren, Brigitte G. Brunelle, Daniel M. Sigman, and Rebecca S. Robinson

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Nature and distribution of slab-derived fluids and mantle sources beneath the Southeast Mariana forearc rift, Julia M. Ribeiro, Robert J. Stern, Katherine A. Kelley, Fernando Martinez, Osamu Ishizuka, William I. Manton, and Yasuhiko Ohara

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Geodynamic Evolution of a Forearc Rift in the Southernmost Mariana Arc, Julia M. Ribeiro, Robert J. Stern, Fernando Martinez, Osamu Ishizuka, Susan G. Merle, Katherine Kelley, Elizabeth Y. Anthony, Minghua Ren, Yasuhiko Ohara, Mark Reagan, Guillaume Girard, and Sherman Bloomer

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How Do Fishing and Environmental Effects Propagate Among and Within Functional Groups?, Marie-Joëlle Rochet, Jeremy Collie, and Verena M. Trenkel

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Traces: Plankton on the move, Cynthia Beth Rubin, Susanne Menden-Deuer, Elizabeth Harvey, and Jerry Fishenden

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Traces: Plankton on the move, Cynthia Beth Rubin, Susanne Menden-Deuer, Elizabeth Harvey, and Jerry Fishenden

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Association of phosphate with rhyolite glass in marine Neogene tuffs from Patagonia, Argentina, Nora Rubinstein, Ana M. Fazio, Roberto A. Scasso, and Steven Carey

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Conservation in the Context of Climate Change: Practical Guidelines for Land Protection at Local Scales, Kevin Ruddock, Peter V. August, Christopher Damon, Charles LaBash, Pamela Rubinoff, and Donald Robadue Jr.

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Analysis of Energy Flow in US GLOBEC Ecosystems Using End-to-End Models, James J. Ruzicka, John H. Steele, Sarah K. Gaichas, Tosca Ballerini, Dian J. Gifford, Richard D. Brodeur, and Eileen E. Hofmann

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Major contribution of diatom resting spores to vertical flux in the sub-polar North Atlantic, T. A. Rynearson, K. Richardson, R. S. Lampitt, M. E. Sieracki, A. J. Poulton, M. M. Lyngsgaard, and M. J. Perry

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Using Hierarchical Bayes to Understand Movement, Health, and Survival in the Endangered North Atlantic Right Whale, Robert S. Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, and James S. Clark

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Spatial and temporal variability in sedimentological and geochemical properties of sediments from an anoxic crater lake in West Africa: Implications for paleoenvironmental reconstructions, Timothy M. Shanahan, Nicholas McKay, Jonathan T. Overpeck, John A. Peck, Christopher Scholz, Clifford W. Heil, and John King

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Age models for long lacustrine sediment records using multiple dating approaches - An example from Lake Bosumtwi, Ghana, Timothy M. Shanahan, John A. Peck, Nicholas McKay, Clifford W. Heil, John King, Steven L. Forman, Dirk L. Hoffmann, David A. Richards, Jonathan T. Overpeck, and Christopher Scholz

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Effects of chronic bottom fishing on the benthic epifauna and diets of demersal fishes on northern georges bank, Brian E. Smith, Jeremy S. Collie, and Nicole L. Lengyel

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On the structure of the Lofoten Basin Eddy, H. Søiland and T. Rossby

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Broad Salinity Tolerance as a Refuge from Predation in the Harmful Raphidophyte Alga Heterosigma akashiwo (Raphidophyceae), Suzanne L. Strom, Elizabeth L. Harvey, Kerri A. Fredrickson, and Susanne Menden-Deuer

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Impact of Breaking Wave Form Drag on Near-Surface Turbulence and Drag Coefficient over Young Seas at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel

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Processing of Underway CTD Data, D. S. Ullman and David Hebert

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Changes in the source of nutrients associated with oceanographic dynamics offshore southern Chile (41°S) over the last 25,000years, Thomas J. Verleye, Philippe Martinez, Rebecca S. Robinson, and Stephen Louwye

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Four Current Meter Models Compared in Strong Currents in Drake Passage, D. Randolph Watts, Maureen A. Kennelly, Kathleen A. Donohue, Karen L. Tracey, Teresa K. Chereskin, Robert A. Weller, and Ivan Victoria

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Unresolved complex mixture (UCM) in coastal environments is derived from fossil sources, Helen K. White, Li Xu, Paul Hartmann, James G. Quinn, and Christopher M. Reddy

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Impact of a warm ocean Eddy's circulation on hurricane-induced sea surface cooling with implications for hurricane intensity, Richard M. Yablonsky and Isaac Ginis

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Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann

Manuscripts from 2012

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Identifying Reference Genes with Stable Expression from High Throughput Sequence Data, Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, and Sonya T. Dyhrman

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Azimuthal anisotropy of Lg attenuation in eastern Tibetan Plateau, Xueyang Bao, Eric Sandvol, Yongshun John Chen, James Ni, Thomas Hearn, and Yang Shen

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Continued Exploration of the Santorini Volcanic Field and Cretan Basin, Aegean Sea, Katherine L. C. Bell, Paraskevi Nomikou, Steven N. Carey, Eleni Stathopoulou, Paraskevi Polymenakou, Athanasios Godelitsas, Chris Roman, and Michelle Parks

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Changes in the biomass of chambo in the southeast arm of Lake Malawi: A stock assessment of Oreochromis spp., Richard J. Bell, Jeremy S. Collie, Daniel Jamu, and Moses Banda

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Manufacturing origin of perfluorooctanoate (PFOA) in Atlantic and Canadian Arctic seawater, Jonathan P. Benskin, Lutz Ahrens, Derek C.G. Muir, Brian F. Scott, Christine Spencer, Bruno Rosenberg, Gregg Tomy, Henrik Kylin, Rainer Lohmann, and Jonathan W. Martin

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Perfluoroalkyl acids in the atlantic and Canadian arctic oceans, Jonathan P. Benskin, Derek C.G. Muir, Brian F. Scott, Christine Spencer, Amila O. De Silva, Henrik Kylin, Jonathan W. Martin, Adam Morris, Rainer Lohmann, Gregg Tomy, Bruno Rosenberg, Sachi Taniyasu, and Nobuyoshi Yamashita

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Evidence of Bottom-Trapped Currents in the Kuroshio Extension Region, Stuart P. Bishop, D. Randolph Watts, Jae-Hun Park, and Nelson G. Hogg

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Coastal Exploration of the Southern Black Sea Off Ereğli and Sinop, Turkey, Michael L. Brennan, Dan Davis, Chris Roman, Ilya V. Buynevich, Alexis Catsambis, Meko Kofahl, Maureen Merrigan, Suna Tuzun, Muhammet Duman, Derya Urkmez, J. Ian Vaughn, and Tufan Turanli

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Submarine Volcanism in the Straits of Sicily, Steven N. Carey, Katherine L. C. Bell, Michael Marani, Mauro Rosi, Edward T. Baker, Chris Roman, Marco Pistolesi, and Joshua Kelly

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Airborne lidar detection and characterization of internal waves in a shallow fjord, James H. Churnside, Richard D. Marchbanks, Jennifer H. Lee, Joseph A. Shaw, Alan Weidmann, and Percy L. Donaghay

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Krill feeding on sediment in the Gulf of Maine (North Atlantic), Alison C. Cleary, Edward G. Durbin, and Tatiana A. Rynearson

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A fisheries risk-assessment framework to evaluate trade-offs among management options in the presence of time-varying productivity, Jeremy S. Collie, Randall M. Peterman, and Brett M. Zuehlke

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A Quantitative Comparison between 1D and 3D Source Inversion Methodologies: Application to the Middle East, Brian M. Covellone and Brian K. Savage

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Vibrio parahaemolyticus in Rhode Island Coastal Ponds and the Estuarine Environment of Narragansett Bay, Annie M. Cox and Marta Gomez-Chiarri

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Fracture of a ridged multi-year Arctic sea ice floe, J. P. Dempsey, Y. Xie, R. M. Adamson, and D. M. Farmer

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Introduction to special section on Recent Advances in the Study of Optical Variability in the Near‐Surface and Upper Ocean, T. Dickey, David Farmer, and et al

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Copepod feeding and digestion rates using prey DNA and qPCR, Edward G. Durbin, Maria C. Casas, and Tatiana A. Rynearson

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Passive sampling provides evidence for Newark Bay as a source of polychlorinated dibenzo-p-dioxins and furans to the New York/New Jersey, USA, atmosphere, Carey L. Friedman, Mark G. Cantwell, and Rainer Lohmann

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Influence of Volatile Degassing on Initial Flow Structure and Entrainment During Undersea Volcanic Fire Fountaining Eruptions, P. D. Friedman, Steven Carey, and M. Raessi

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Validation of Shear‐Wave Velocity Models of the Pacific Northwest, Haiying Gao and Yang Shen

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In memory of Professor Howard A. Bern, E. Gordon Grau, Richard S. Nishioka, Alan Bern, Tetsuya Hirano, Russell Borski, Craig Clarke, Kevin Foskett, Louis J. Guillette, Taisen Iguchi, Lovell A. Jones, Christopher Loretz, Stephen McCormick, Anne MacLachlan, Carol A. Mason, Karen T. Mills, Yoshitaka Nagahama, Charles S. Nicoll, N. Harold Richman, Mark Sheridan, Jennifer L. Specker, James J. Sullivan, Timothy Turner, and Graham Young

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Evidence of vertical coupling between the kuroshio extension and topographically controlled deep eddies, Andrew D. Greene, D. Randolph Watts, Georgi G. Sutyrin, and Hideharu Sasaki

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Recent Arctic Climate Change and Its Remote Forcing of Northwest Atlantic Shelf Ecosystems, Charles H. Greene, Bruce C. Monger, Louise P. McGarry, Matthew D. Connelly, Neesha R. Schnepf, Andrew J. Pershing, Igor M. Belkin, Paula S. Ftratantoni, David G. Mountain, Robert S. Pickart, Rubao Ji, James J. Bisagni, Changsheng Chen, Sirpa M. A. Hakkinen, Dale B. Haidvogel, Jia Wang, Erica Head, Peter Smith, and Alessandra Conversi

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Predator-Induced Fleeing Behaviors in Phytoplankton: A New Mechanism for Harmful Algal Bloom Formation?, Elizabeth L. Harvey and Susanne Menden-Deuer

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Dominant eukaryotic export production during ocean anoxic events reflects the importance of recycled NH4+, Meytal B. Higgins, Rebecca S. Robinson, Jonathan M. Husson, Susan J. Carter, and Ann Pearson

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A pipeline for structured light bathymetric mapping, Gabrielle Inglis, Clara Smart, Ian Vaughn, and Chris Roman

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Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment, Jens Kallmeyer, Robert Pockalny, Rishi Ram Adhikari, David C. Smith, and Steven D'Hondt

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The influence of magmatic differentiation on the oxidation state of Fe in a basaltic arc magma, Katherine A. Kelley and Elizabeth Cottrell

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Field validation of polyethylene passive air samplers for parent and alkylated PAHs in Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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Concurrent activity of anammox and denitrifying bacteria in the Black Sea, John B. Kirkpatrick, Clara A. Fuchsman, Evgeniy Yakushev, James T. Staley, and James W. Murray

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Identifying the research needs in the global assessment of toxic compounds 10 years after the signature of the Stockholm Convention, Gerhard Lammel and Rainer Lohmann

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Drivers of protistan grazing pressure: Seasonal signals of plankton community composition and environmental conditions, Caitlyn Lawrence and Susanne Menden-Deuer

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The PAMS (Pacific-Asian Marginal Seas) study, Jae Hak Lee, Takeshi Matsuno, Mark Wimbush, Dongliang Yuan, and Kyung Il Chang

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A complex Tibetan upper mantle: A fragmented Indian slab and no south-verging subduction of Eurasian lithosphere, Xiaofeng Liang, Eric Sandvol, Y. John Chen, Thomas Hearn, James Ni, Simon Klemperer, Yang Shen, and Frederik Tilmann

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Critical review of low-density polyethylene's partitioning and diffusion coefficients for trace organic contaminants and implications for its use as a passive sampler, Rainer Lohmann

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Use of passive sampling devices for monitoring and compliance checking of POP concentrations in water, Rainer Lohmann, Kees Booij, Foppe Smedes, and Branislav Vrana

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PCBs and OCPs on a east-to-west transect: The importance of major currents and net volatilization for PCBs in the atlantic ocean, Rainer Lohmann, Jana Klanova, Petr Kukucka, Shifra Yonis, and Kevyn Bollinger

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Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment, Bente Aa Lomstein, Alice T. Langerhuus, Steven D'Hondt, Bo B. Jørgensen, and Arthur J. Spivack

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Mantle dynamics beneath the Pacific Northwest and the generation of voluminous back‐arc volcanism, Maureen D. Long, Christy B. Till, Kelsey A. Drunken, Richard W. Carlson, Lara S. Wagner, Matthew J. Fouch, David E. James, Timothy L. Grove, Nicholas Schmerr, and Christopher R. Kincaid

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Tracing mantle sources and Samoan influence in the northwestern Lau back-arc basin, Marion L. Lytle, Katherine A. Kelley, Erik H. Hauri, James B. Gill, Dominic Papia, and Richard J. Arculus

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The Metabolic Response of Pteropods to Acidification Reflects Natural CO2-Exposure in Oxygen Minimum Zones, A. E. Maas, K. F. Wishner, and B. A. Seibel

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Structure-Dependent phytoplankton photosynthesis and production rates: Implications for the formation, maintenance, and decline of plankton patches, Susanne Menden-Deuer

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Introduction to "Holocene water levels and paleo-hydrology of the Laurentian Great Lakes", C. F. Michael Lewis and John W. King

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Near 13 day barotropic ocean response to the atmospheric forcing in the North Pacific, Hanna Na, Jae Hun Park, D. Randolph Watts, Kathleen A. Donohue, and Ho Jin Lee

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Submarine volcanoes of the Kolumbo volcanic zone NE of Santorini Caldera, Greece, P. Nomikou, S. Carey, D. Papanikolaou, K. Croff Bell, D. Sakellariou, M. Alexandri, and K. Bejelou

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A serpentinite-hosted ecosystem in the Southern Mariana Forearc, Yashuiko Ohara, Mark K. Reagan, Katsunori Fujikura, Hiromi Watanabe, Katsuyoshi Michibayahi, Teruaki Ishii, Robert J. Stern, Ignacio Pujana, Fernando Martinez, Guillaume Girard, Julia Ribeiro, Maryjo Brounce, Naoaki Komori, and Masashi Kino

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A Cenozoic record of the equatorial Pacific carbonate compensation depth, Heiko Pälike, Mitchell W. Lyle, Hiroshi Nishi, Isabella Raffi, Andy Ridgwell, Kusali Gamage, Adam Klaus, Gary Acton, Louise Anderson, Jan Backman, Jack Baldauf, Catherine Beltran, Steven M. Bohaty, Paul Bown, William Busch, Jim E.T. Channell, Cecily O.J. Chun, Margaret Delaney, Pawan Dewangan, Tom Dunkley Jones, Kirsty M. Edgar, Helen Evans, Peter Fitch, Gavin L. Foster, Nikolaus Gussone, Hitoshi Hasegawa, Ed C. Hathorne, Hiroki Hayashi, Jens O. Herrle, Ann Holbourn, Steve Hovan, Kiseong Hyeong, Koichi Iijima, Takashi Ito, Shin Ichi Kamikuri, and Katsunori Kimoto

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Comparisons of sea surface height variability observed by pressure-recording inverted echo sounders and satellite altimetry in the Kuroshio Extension, Jae Hun Park, D. R. Watts, Kathleen A. Donohue, and Karen L. Tracey

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Biomarkers challenge early Miocene loess and inferred Asian desertification, Tingjiang Peng, Jijun Li, Chunhui Song, Zhijun Zhao, Jun Zhang, Zhengchuang Hui, and John W. King

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Quantifying dispersal and connectivity of surface waters using observational lagrangian measurements, Christopher G. Piecuch and Tatiana A. Rynearson

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Upper mantle structures beneath the Carpathian-Pannonian region: Implications for the geodynamics of continental collision, Y. Ren, G. W. Stuart, G. A. Houseman, B. Dando, C. Ionescu, E. Hegedüs, S. Radovanović, and Y. Shen

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A review of nitrogen isotopic alteration in marine sediments, Rebecca S. Robinson, Markus Kienast, Ana Luiza Albuquerque, Mark Altabet, Sergio Contreras, Ricardo De Pol Holz, Nathalie Dubois, Roger Francois, Eric Galbraith, Ting-Chang Hsu, Tara Ivanochko, Samuel Jaccard, Shuh-Ji Kao, Thorsten Kiefer, Stephanie Kienkast, Moritz Lehmann, Philippe Martinez, Matthew McCarthy, Jürgen Möbius, Tom Pedersen, Tracey M. Quan, Evgeniya Ryabenko, Andreas Schmittner, Ralph Schneider, Aya Schneider-Mor, Masahito Shigemitsu, Dan Sinclair, Christopher Somes, Anja Studer, Robert Thunell, and Jin-Yu Yang

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The Development of High-Resolution Seafloor Mapping Techniques, Chris Roman, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, Bertrand Douillard, and Stefan Williams

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Aerosol effects on microstructure and intensity of tropical cyclones, Daniel Rosenfeld, William L. Woodley, Alexander Khain, William R. Cotton, Gustavo Carrió, Isaac Ginis, and Joseph H. Golden

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Partnership proposed for ocean observation, T. Rossby

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Direct measurement of volume flux in the Faroe-Shetland Channel and over the Iceland-Faroe Ridge, T. Rossby and C. N. Flagg

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Aerobic microbial respiration in 86-million-year-old deep-sea red clay, Hans Røy, Jens Kallmeyer, Rishi Ram Adhikari, Robert Pockalny, Bo Barker Jørgensen, and Steven D'Hondt

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Shelf‐basin exchange times of Arctic surface waters estimated from 228TH/228Ra disequilibrium, M. Rutgers van der Loeff, P. Cai, I. Stimac, D. Bauch, C. Hanfland, T. Roeske, and S. Bradley Moran

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Freely dissolved PBDEs in water and porewater of an urban estuary, Victoria P. Sacks and Rainer Lohmann

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Tsunami triggering mechanisms associated with the 17th cent. BC Minoan eruption of thera Volcano, Greece, Dimitris Sakellariou, Grigoris Rousakis, Paraskevi Nomikou, Kathy Croff Bell, Steve Carey, and Haraldur Sigurdsson

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Late Quaternary sedimentological and climate changes at Lake Bosumtwi Ghana: New constraints from laminae analysis and radiocarbon age modeling, Timothy M. Shanahan, J. Warren Beck, Jonathan T. Overpeck, Nicholas P. McKay, Jeffrey S. Pigati, John A. Peck, Christopher A. Scholz, Clifford W. Heil, and John King

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Changing polar environments: Interdisciplinary challenges, Paul B. Shepson, Parisa A. Ariya, Clara J. Deal, D. James Donaldson, Thomas A. Douglas, Brice Loose, Ted Maksym, Patricia A. Matrai, Lynn M. Russell, Benjamin Saenz, Jacqueline Stefels, and Nadja Steiner

Erratum: Changing polar environments: Interdisciplinary challenges (Eos 93:11 (117-118) DOI: 10.1029/2012EO110001), Paul B. Shepson, Parisa A. Ariya, Clara J. Deal, D. James Donaldson, Thomas A. Douglas, Brice Loose, Ted Maksym, Patricia A. Matrai, Lynn M. Russell, Benjamin Saenz, Jacqueline Stefels, and Nadja Steiner

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An Adaptive Framework for Selecting Environmental Monitoring Protocols to Support Ocean Renewable Energy Development, Emily J. Shumchenia, Sarah L. Smith, Jennifer McCann, Michelle Carnevale, Grover Fugate, Robert D. Kenney, John W. King, Peter W. C. Paton, Malia Schwartz, Malcolm Spaulding, and Kritopher J. Winiarski

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Quantifying variation in water column photosynthetic quotient with changing field conditions in Narragansett Bay, RI, USA, Leslie M. Smith, Celine M. Silver, and Candace A. Oviatt

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Propagation of Kuroshio Extension Meanders between 143° and 149°E, Karen L. Tracey, D. Randolph Watts, Kathleen A. Donohue, and Hiroshi Ichikawa

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Nitrogen isotope ratio of cyanobacterial chlorophyll: Chemostat vs. batch culture, Leah E. Tsao, Rebecca S. Robinson, Meytal B. Higgins, and Ann Pearson

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Structure and dynamics of the midshelf front in the New York Bight, D. S. Ullman, D. L. Codiga, D. Hebert, L. B. Decker, and C. R. Kincaid

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The sources of volatile and fluid-mobile elements in the Sunda arc: A melt inclusion study from Kawah Ijen and Tambora volcanoes, Indonesia, Nathalie Vigouroux, Paul J. Wallace, Glyn Williams-Jones, Katherine Kelley, Adam J.R. Kent, and Anthony E. Williams-Jones

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Molecular Subdivision of the Marine Diatom Thalassiosira rotula in Relation to Geographic Distribution, Genome Size, and Physiology, Kerry A. Whittaker, Dayna R. Rignanese, Robert J. Olson, and Tatiana A. Rynearson