Explore scholarly publications from the Graduate School of Oceanography faculty at the University of Rhode Island.

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Manuscripts from 2012

Erratum: Changing polar environments: Interdisciplinary challenges (Eos 93:11 (117-118) DOI: 10.1029/2012EO110001), Paul B. Shepson, Parisa A. Ariya, Clara J. Deal, D. James Donaldson, Thomas A. Douglas, Brice Loose, Ted Maksym, Patricia A. Matrai, Lynn M. Russell, Benjamin Saenz, Jacqueline Stefels, and Nadja Steiner

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An Adaptive Framework for Selecting Environmental Monitoring Protocols to Support Ocean Renewable Energy Development, Emily J. Shumchenia, Sarah L. Smith, Jennifer McCann, Michelle Carnevale, Grover Fugate, Robert D. Kenney, John W. King, Peter W. C. Paton, Malia Schwartz, Malcolm Spaulding, and Kritopher J. Winiarski

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Quantifying variation in water column photosynthetic quotient with changing field conditions in Narragansett Bay, RI, USA, Leslie M. Smith, Celine M. Silver, and Candace A. Oviatt

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Propagation of Kuroshio Extension Meanders between 143° and 149°E, Karen L. Tracey, D. Randolph Watts, Kathleen A. Donohue, and Hiroshi Ichikawa

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Nitrogen isotope ratio of cyanobacterial chlorophyll: Chemostat vs. batch culture, Leah E. Tsao, Rebecca S. Robinson, Meytal B. Higgins, and Ann Pearson

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Structure and dynamics of the midshelf front in the New York Bight, D. S. Ullman, D. L. Codiga, D. Hebert, L. B. Decker, and C. R. Kincaid

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The sources of volatile and fluid-mobile elements in the Sunda arc: A melt inclusion study from Kawah Ijen and Tambora volcanoes, Indonesia, Nathalie Vigouroux, Paul J. Wallace, Glyn Williams-Jones, Katherine Kelley, Adam J.R. Kent, and Anthony E. Williams-Jones

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Molecular Subdivision of the Marine Diatom Thalassiosira rotula in Relation to Geographic Distribution, Genome Size, and Physiology, Kerry A. Whittaker, Dayna R. Rignanese, Robert J. Olson, and Tatiana A. Rynearson

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Geochemistry of basalts from IODP site U1365: Implications for magmatism and mantle source signatures of the mid-Cretaceous Osbourn Trough, Guoliang Zhang, Christopher Smith-Duque, Suohan Tang, He Li, Carlos Zarikian, Steven D'Hondt, and Fumio Inagaki

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Fate of chiral and achiral organochlorine pesticides in the north Atlantic bloom experiment, Lin Zhang, Terry Bidleman, Mary Jane Perry, and Rainer Lohmann

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Three-dimensional anisotropic seismic wave modelling in spherical coordinates by a collocated-grid finite-difference method, Wei Zhang, Yang Shen, and Li Zhao

Manuscripts from 2011

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Pacific Atmospheric Sulfur Experiment (PASE): dynamics and chemistry of the south Pacific tropical trade wind regime, Alan Bandy, Ian C. Faloona, Byron W. Blomquist, Barry J. Huebert, Antony D. Clarke, Steven G. Howell, R. L. Mauldin, Christopher A. Cantrell, James G. Hudson, Brian G. Heikes, John T. Merrill, Yuhang Wang, Daniel W. O'Sullivan, Wolfgang Nadler, and Douglas D. Davis

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High resolution regional seismic attenuation tomography in eastern Tibetan Plateau and adjacent regions, Xueyang Bao, Eric Sandvol, James Ni, Thomas Hearn, Yongshun John Chen, and Yang Shen

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An International Quiet Ocean Experiment, Ian L. Boyd, George Frisk, Ed Urban, Peter Tyack, Jesse Ausubel, Sophie Seeyave, Doug Cato, Brandon Southall, Michael Weise, Rex Andrew, Tomonari Akamatsu, René Dekeling, Christine Erbe, David Farmer, Roger Gentry, Tom Gross, Anthony Hawkins, Fenghua Li, Kathy Metcalf, James H. Miller, David Moretti, Cristian Rodrigo, and Tomio Shinke

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Maritime History of ANZAC Cove, Michael L. Brennan, Dwight Coleman, Christopher N. Roman, Tufan Turanli, Dan Davis, Alexis Catsambis, James Moore, Maureen Merrigan, Brennan Bajdek, Daniel Whitesell, and Robert Ballard

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Landscape Imaging of the Southeast Aegean Sea, Michael L. Brennan, Tufan Turanli, Bridget Buxton, Katherine L. Croff Bell, Christopher N. Roman, Meko Kofahl, Orkan Koyagasioglu, Daniel Whitesell, Thomas Chamberlain, Richard Sullivan, and Robert Ballard

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Exploration of the Kolumbo Volcanic Rift Zone, Steven Carey, Katherine L. Croff Bell, Paraskevi Nomikou, Georges Vougioukalakis, Christopher N. Roman, Kathleen Cantner, Konstantina Bejelou, Maria Bourbouli, and Julie Fero Martin

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Volcaniclastic processes and deposits in the deep-sea, Steven N. Carey and Jean Luc Schneider

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The oxidation state of Fe in MORB glasses and the oxygen fugacity of the upper mantle, Elizabeth Cottrell and Katherine A. Kelley

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Improvements to the methods used to measure bubble attenuation using an underwater acoustical resonator, Helen Czerski, Svein Vagle, David M. Farmer, and Nick Hall-Patch

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Numerical investigations of seasonal and interannual variability of North Pacific subtropical mode water and its implications for Pacific climate variability, Xujing Jia Davis, Lewis M. Rothstein, William K. Dewar, and Dimitris Menemenlis

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Patterns in seismic anisotropy driven by rollback subduction beneath the High Lava Plains, K. A. Druken, M. D. Long, and C. Kincaid

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Detailed Comparisons of Airborne Formaldehyde Measurements with Box Models during the 2006 INTEX-B and MILAGRO Campaigns: Potential Evidence for Significant Impacts of Unmeasured and Multi-Generation Volatile Organic Carbon Compounds, A. Fried, B. G. Heikes, and et al

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Resuspension of polychlorinated biphenyl-contaminated field sediment: Release to the water column and determination of site-specific K DOC, Carey L. Friedman, Rainer Lohmann, Robert M. Burgess, Monique M. Perron, and Mark G. Cantwell

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Experimental Tropical Cyclone Prediction Using the GFDL 25-km-Resolution Global Atmospheric Model, Jeffrey S. Gall, Isaac Ginis, Shian-Jiann Lin, Timothy P. Marchok, and Jan-Huey Chen

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A thermodynamic approach for assessing the environmental exposure of chemicals absorbed to microplastic, Todd Gouin, Nicola Roche, Rainer Lohmann, and Geoff Hodges

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Extraction method influences the recovery of phytoplankton pigments from natural assemblages, Jason R. Graff and Tatiana A. Rynearson

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Heterotrophic organisms dominate nitrogen fixation in the south pacific gyre, Hannah Halm, Phyllis Lam, Timothy G. Ferdelman, Gaute Lavik, Thorsten Dittmar, Julie Laroche, Steven D’Hondt, and Marcel M.M. Kuypers

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Avoidance, movement, and mortality: The interactions between a protistan grazer and Heterosigma akashiwo, a harmful algal bloom species, Elizabeth L. Harvey and Susanne Menden-Deuer

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Paleoenvironmental implications of taxonomic variation among δ15N values of chloropigments, Meytal B. Higgins, Felisa Wolfe-Simon, Rebecca S. Robinson, Yelun Qin, Mak A. Saito, and Ann Pearson

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Southern Ocean Gas Exchange Experiment: Setting the stage, David T. Ho, Christopher L. Sabine, David Hebert, David S. Ullman, Rik Wanninkhof, Roberta C. Hamme, Peter G. Strutton, Burke Hales, James B. Edson, and Bruce R. Hargreaves

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Toward a universal relationship between wind speed and gas exchange: Gas transfer velocities measured with 3He/SF6 during the Southern Ocean Gas Exchange Experiment, David T. Ho, Rik Wanninkhof, Peter Schlosser, David S. Ullman, David Hebert, and Kevin F. Sullivan

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Southern ocean nitrogen and silicon dynamics during the last deglaciation, Matthew G. Horn, Charlotte P. Beucher, Rebecca S. Robinson, and Mark A. Brzezinski

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Nitrogen isotopic relationship between diatom-bound and bulk organic matter of cultured polar diatoms, Matthew G. Horn, Rebecca S. Robinson, Tatiana A. Rynearson, and Daniel M. Sigman

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U-series disequilibria in Kick'em Jenny submarine volcano lavas: A new view of time-scales of magmatism in convergent margins, Fang Huang, Craig C. Lundstrom, Haraldur Sigurdsson, and Zhaofeng Zhang

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Northeast US precipitation variability and North American climate teleconnections interpreted from late Holocene varved sediments, J. Bradford Hubeny, John W. King, and Mike Reddin

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Detection of Diffuse Sea Floor Venting Using Structured Light Imaging, Gabrielle Inglis, Clara Smart, Christopher Roman, and Steven Carey

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Development of High Resolution Sea Floor Mapping Tools and Techniques, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, and Christopher N. Roman

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Biodiversity and Ecosystem Function in the Gulf of Maine: Pattern and Role of Zooplankton and Pelagic Nekton, Catherine L. Johnson, Jeffrey A. Runge, K. Alexandra Curtis, Edward G. Durbin, Jonathan A. Hare, Lewis S. Incze, Jason S. Link, Gary D. Melvin, Todd D. O'Brien, and Lou Van Guelpen

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Insights into nitrogen cycling in the western Gulf of California from the nitrogen isotopic composition of diatom-bound organic matter, Julie F. Kalansky, Rebecca S. Robinson, and Brian N. Popp

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Identifying the research and infrastructure needs for the global assessment of hazardous chemicals ten years after establishing the Stockholm convention, Jana Klánová, Miriam Diamond, Kevin Jones, Gerhard Lammel, Rainer Lohmann, Nicola Pirrone, Martin Scheringer, Catia Balducci, Terry Bidleman, Karel Bláha, Luděk Bláha, Kees Booij, Henk Bouwman, Knut Breivik, Sabine Eckhardt, Heidelore Fiedler, Philippe Garrigues, Tom Harner, Ivan Holoubek, Hayley Hung, Matthew MacLeod, Katarina Magulova, Silvia Mosca, Alberto Pistocchi, Staci Simonich, Foppe Smedes, Euripides Stephanou, Andy Sweetman, Kateřina Šebková, Marta Venier, Marco Vighi, Branislav Vrana, Frank Wania, Roland Weber, and Peter Weiss

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Role of black carbon in the sorption of polychlorinated dibenzo-p-dioxins and dibenzofurans at the diamond alkali superfund site, Newark Bay, New Jersey, Matthew K. Lambert, Carey Friedman, Pamela Luey, and Rainer Lohmann

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Instabilities in an Internal Solitary-like Wave on the Oregon Shelf, Levin G. Lamb and David M. Farmer

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Tidal Effects on Intermediate Waters: A Case Study in the East/Japan Sea, Ho Jin Lee, Jae-Hun Park, Mark Wimbush, Kyung Tae Jung, Chan Joo Jang, Yang-Ki Cho, Young-Kyo Seo, and Jong Ho Nam

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Crustal and mantle velocity models of southern Tibet from finite frequency tomography, Xiaofeng Liang, Yang Shen, Yongshun John Chen, and Yong Ren

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The generation and evolution of nonlinear internal waves in the deep basin of the South China Sea, Qiang Li and David M. Farmer

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Planktonic Microbes in the Gulf of Maine Area, William K.W. Li, Robert A. Andersen, Dian J. Gifford, Lewis S. Incze, Jennifer L. Martin, Cynthia H. Pilskaln, Juliette N. Rooney-Varga, Michael E. Sieracki, William H. Wilson, and Nicholas H. Wolff

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Determining air-water exchange, spatial and temporal trends of freely dissolved PAHs in an urban estuary using passive polyethylene samplers, Rainer Lohmann, Meredith Dapsis, Eric J. Morgan, Victoria Dekany, and Pamela J. Luey

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Evidence for aggregation and export of cyanobacteria and nano-eukaryotes from the Sargasso Sea euphotic zone, M. W. Lomas and S. Bradley Moran

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Increase of South Pacific eastern subtropical mode water under global warming, Yiyong Luo, Qinyu Liu, and Lewis M. Rothstein

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Response of the Pacific Ocean circulation to climate change, Yiyong Luo and Lewis M. Rothstein

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Inferred growth of juvenile French grunts, Haemulon flavolineatum, and schoolmaster, Lutjanus apodus, in mangrove and seagrass habitats, Ivan Mateo, Edward Durbin, Richard Appeldoorn, Aaron Adams, Francis Juanes, and Daisy Durant

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Sustained Monitoring of the Southern Ocean at Drake Passage: Past Achievements and Future Priorities, Michael P. Meredith, Philip L. Woodworth, Teresa K. Chereskin, David P. Marshall, Lesley C. Allison, Grant R. Bigg, Kathleen A. Donohue, Karen J. Heywood, Chris W. Hughes, Angela Hibbert, Andrew McC. Hogg, Helen L. Johnson, Loic Jullion, Brian A. King, Harry Leach, Yueng-Djern Lenn, Miguel A. Morales Maqueda, David R. Munday, Alberto C. Naveira Garabato, Christine Provost, Jean-Baptiste Sallée, and Janet Sprintall

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Fresh Water Inflow and Oyster Productivity in Apalachicola Bay, FL (USA), Autumn J. Oczkowski, F. Graham Lewis, Scott W. Nixon, H. Lee Edmiston, Rebecca S. Robinson, and Jeffrey P. Chanton

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Along-arc variations in the pre-eruptive H2O contents of mariana arc magmas inferred from fractionation paths, S. W. Parman, T. L. Grove, K. A. Kelley, and T. Plank

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Plicate species of the diatom genus Thalassiosira (Bacillariophyta) from the Atlantic and Gulf coasts of southeastern United States, with the description of T.livingstoniorum sp.nov., Akshinthala K.S.K. Prasad, James A. Nienow, and Paul Hargraves

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Does selective fishing conserve community biodiversity? Predictions from a length-based multispecies model, Marie Joëlle Rochet, Jeremy S. Collie, Simon Jennings, and Stephen J. Hall

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Concept Tests for a New Wire Flying Vehicle Designed to Achieve High Horizontal Resolution Profiling in Deep Water, Chris Roman and Dave Hebert

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Lagrangian floats as sea floor imaging platforms, Chris Roman, Gabrielle Inglis, and Bryan McGilvray

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Development of High-Resolution Underwater Mapping Techniques, Christopher N. Roman, Gabrielle Inglis, J. Ian Vaughn, Stefan Williams, Oscar Pizarro, Ariell Friedman, and Daniel Steinberg

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A tale of two eddies: Diagnosing coherent eddies through acoustic remote sensing, T. Rossby, C. Flagg, P. Ortner, and C. Hu

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Learning to Read the Oceans. Genomics of Marine Phytoplankton, Tatiana A. Rynearson and Brian Palenik

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Development and use of polyethylene passive samplers to detect triclosans and alkylphenols in an Urban estuary, Victoria P. Sacks and Rainer Lohmann

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Sensing the ocean, Thomas B. Sanford, Kathryn A. Kelly, and David M. Farmer

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Scientific drilling in the Great Rift Valley: The 2005 Lake Malawi Scientific Drilling Project - An overview of the past 145,000years of climate variability in Southern Hemisphere East Africa, C. A. Scholz, A. S. Cohen, T. C. Johnson, J. King, M. R. Talbot, and E. T. Brown

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Exploration of the Anaximander Mud Volcanoes, Timothy M. Shank, Santiago Herrera, Walter Cho, Christopher N. Roman, and Katherine L. Croff Bell

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Remote Analysis of Grain Size Characteristic in Submarine Pyroclastic Deposits from Kolumbo Volcano, Greece, Clara Smart, D. P. Whitesell, Christopher N. Roman, and Steven Carey

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Comparing species and ecosystem-based estimates of fisheries yields, John H. Steele, Dian J. Gifford, and Jeremy S. Collie

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Mapping Shallow Coastal Ecosystems: A Case Study of a Rhode Island Lagoon, Mark Stolt, Michael Bradley, Jim Turenne, Maggie Payne, Eric Scherer, Giancarlo Cicchetti, Emily Shumchenia, Marisa Guarinello, John W. King, Jon Boothroyd, Bryan Oakley, Carol Thornber, and Pete August

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On the Geostrophic Adjustment of an Isolated Lens: Dependence on Burger Number and Initial Geometry, Grant A. Stuart, Miles A. Sundermeyer, and Dave Hebert

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Enhanced sorption of PAHs in natural-fire-impacted sediments from Oriole Lake, California, Julia Sullivan, Kevyn Bollinger, Anthony Caprio, Mark Cantwell, Peter Appleby, John King, Bertrand Ligouis, and Rainer Lohmann

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Turbulent Airflow at Young Sea States with Frequent Wave Breaking Events: Large-Eddy Simulation, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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Non-linear Responses of a Coastal Aquatic Ecosystem to Large Decreases in Nutrient and Organic Loadings, David I. Taylor, Candace A. Oviatt, and David G. Borkman

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Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323), Laura M. Wehrmann, Nils Risgaard-Petersen, Heather N. Schrum, Emily A. Walsh, Youngsook Huh, Minoru Ikehara, Catherine Pierre, Steven D'Hondt, Timothy G. Ferdelman, Ana Christina Ravelo, Kozo Takahashi, and Carlos Alvarez Zarikian

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Simulating the time-dependent diffusion coefficient in mixed-pore-size materials, Zhigang Zhang, David L. Johnson, and Lawrence M. Schwartz

Manuscripts from 2010

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A Regional Scale Modeling Analysis of Aerosol and Trace Gas Distributions over the Eastern Pacific During the INTEX-B Field Campaign, B. Adhikary, B. G. Heikes, and et al

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Climate Variability, Oceanography, Bowhead Whale Distribution, and Iñupiat Subsistence Whaling near Barrow, Alaska, Carin J. Ashjian, Stephen R. Braund, Robert Campbell, J. C. "Craig" George, Jack Kruse, Wieslaw Maslowski, Sue E. Moore, Craig R. Nicolson, Stephen R. Okkonen, Barry F. Sherr, Evelyn B. Sherr, and Yvette H. Spitz

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Observations of mesoscale eddies in the South Atlantic Cape Basin: Baroclinic and deep barotropic eddy variability, S. Baker-Yeboah, D. A. Byrne, and D. R. Watts

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Transformation of an Agulhas eddy near the continental slope, S. Baker-Yeboah, G. R. Flieri, Georgi G. Sutyrin, and Y. Zhang

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Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis, Derik Barseghian, Ilkay Altintas, Matthew B. Jones, Daniel Crawl, Nathan Potter, James Gallagher, Peter Cornillon, Mark Schildhauer, Elizabeth T. Borer, Eric W. Seabloom, and Parviez R. Hosseini

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Gas bubbles as oceanographic tracers, Burkard Baschek and David M. Farmer

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Identification and determination of trinitrotoluenes and their degradation products using liquid chromatography-electrospray ionization mass spectrometry, Jitka Bečanová, Zdeněk Friedl, and Zdeněk Šimek

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Robotic tools for deep water archaeology: Surveying an ancient shipwreck with an autonomous underwater vehicle, Brian Bingham, Brendan Foley, Hanumant Singh, Richard Camilli, Katerina Delaporta, Ryan Eustice, Angelos Mallios, David Mindell, Christopher Roman, and Dimitris Sakellariou

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Records of large earthquakes in lake sediments along the North Anatolian Fault, Turkey, X. Boës, S. B. Moran, J. King, M. N. Cağatay, and A. Hubert-Ferrari

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Preliminary and novel estimates of CO2 gas transfer using a satellite scatterometer during the 2001GasEx experiment, Darek Bogucki, Mary Elena Carr, William M. Drennan, Peter Woiceshyn, Tetsu Hara, and Marjorie Schmeltz

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Short- and Medium-Range Prediction of Tropical and Transitioning Cyclone Tracks within the NCEP Global Ensemble Forecasting System, Christian E. Buckingham, Timothy Marchok, Isaac Ginis, Lewis M. Rothstein, and Dail Rowe

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Toward linking ocean models to fish population dynamics, Lawrence J. Buckley and Lauren B. Buckley

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Temporal trends of triclosan contamination in dated sediment cores from four urbanized estuaries: Evidence of preservation and accumulation, Mark G. Cantwell, Brittan A. Wilson, Jun Zhu, Gordon T. Wallace, John W. King, Curtis R. Olsen, Robert M. Burgess, and Joseph P. Smith

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The past, present, and future of the AVHRR pathfinder SST program, Kenneth S. Casey, Tess B. Brandon, Peter Cornillon, and Robert Evans

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Poleward decrease in the isotope effect of nitrate assimilation across the Southern Ocean, Peter J. Difiore, Daniel M. Sigman, Kristen L. Karsh, Thomas W. Trull, Robert B. Dunbar, and Rebecca S. Robinson

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Mapping Circulation in the Kuroshio Extension with an Array of Current and Pressure Recording Inverted Echo Sounders, Kathleen A. Donohue, D. Randolph Watts, Karen L. Tracey, Andrew D. Greene, and Maureen A. Kennelly

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Impact of Mexico City Emissions on Regional Air Quality from MOZART-4 Simulations, L. K. Emmons, E. C. Apel, J. -F. Lamarque, P. G. Hess, M. Avery, D. Blake, W. Brune, T. Campos, J. Crawford, P. F. DeCarlo, S. Hall, B. G. Heikes, J. Holloway, J. L. Jimenez, D. J. Knapp, G. Kok, M. Mena-Carrasco, J. Olson, D. O'Sullivan, G. Sachse, J. Walega, P. Weibring, A. Weinheimer, and C. Wiedinmyer

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Momentum Flux Budget across the Air–Sea Interface under Uniform and Tropical Cyclone Winds, Yalin Fan, Isaac Ginis, and Tetsu Hara

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Field‐derived Henry's law constants for polychlorinated biphenyls in oceanic waters, Rosalinda Gioia, Kevin C. Jones, Rainer Lohmann, Luca Nizzetto, and Jordi Dachs

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Marine habitat classification for ecosystem-based management: A proposed hierarchical framework, Marisa L. Guarinello, Emily J. Shumchenia, and John W. King

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Differences between East Asian and Indian monsoon climate records during MIS3 attributed to differences in their driving mechanisms: Evidence from the loess record in the Sichuan basin, southwestern China and other continental and marine climate records, Wenxia Han, Xiaomin Fang, Shengli Yang, and John King

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Climatic interpretation of a 1.9 Ma environmental magnetic record of loess deposition and soil formation in the central eastern Pampas of Buenos Aires, Argentina, Clifford W. Heil, John W. King, Marcelo A. Zárate, and Peter H. Schultz

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Evidence from chlorin nitrogen isotopes for alternating nutrient regimes in the Eastern Mediterranean Sea, Meytal B. Higgins, Rebecca S. Robinson, Susan J. Carter, and Ann Pearson

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Radiocarbon dating of individual lignin phenols: A new approach for establishing chronology of late quaternary lake sediments, Juzhi Hou, Yongsong Huang, Corynn Brodsky, Marcelo R. Alexandre, Ann P. McNichol, John W. King, Feng Sheng Hu, and Ji Shen

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Sonar constrained stereo correspondence for three-dimensional seafloor reconstruction, Gabrielle Inglis and Chris Roman