Publications from the faculty and research scientists of the Graduate School of Oceanography.
Manuscripts from 2011
Determining air-water exchange, spatial and temporal trends of freely dissolved PAHs in an urban estuary using passive polyethylene samplers, Rainer Lohmann, Meredith Dapsis, Eric J. Morgan, Victoria Dekany, and Pamela J. Luey
Evidence for aggregation and export of cyanobacteria and nano-eukaryotes from the Sargasso Sea euphotic zone, M. W. Lomas and S. Bradley Moran
Increase of South Pacific eastern subtropical mode water under global warming, Yiyong Luo, Qinyu Liu, and Lewis M. Rothstein
Response of the Pacific Ocean circulation to climate change, Yiyong Luo and Lewis M. Rothstein
Inferred growth of juvenile French grunts, Haemulon flavolineatum, and schoolmaster, Lutjanus apodus, in mangrove and seagrass habitats, Ivan Mateo, Edward Durbin, Richard Appeldoorn, Aaron Adams, Francis Juanes, and Daisy Durant
Sustained Monitoring of the Southern Ocean at Drake Passage: Past Achievements and Future Priorities, Michael P. Meredith, Philip L. Woodworth, Teresa K. Chereskin, David P. Marshall, Lesley C. Allison, Grant R. Bigg, Kathleen A. Donohue, Karen J. Heywood, Chris W. Hughes, Angela Hibbert, Andrew McC. Hogg, Helen L. Johnson, Loic Jullion, Brian A. King, Harry Leach, Yueng-Djern Lenn, Miguel A. Morales Maqueda, David R. Munday, Alberto C. Naveira Garabato, Christine Provost, Jean-Baptiste Sallée, and Janet Sprintall
Fresh Water Inflow and Oyster Productivity in Apalachicola Bay, FL (USA), Autumn J. Oczkowski, F. Graham Lewis, Scott W. Nixon, H. Lee Edmiston, Rebecca S. Robinson, and Jeffrey P. Chanton
Along-arc variations in the pre-eruptive H2O contents of mariana arc magmas inferred from fractionation paths, S. W. Parman, T. L. Grove, K. A. Kelley, and T. Plank
Plicate species of the diatom genus Thalassiosira (Bacillariophyta) from the Atlantic and Gulf coasts of southeastern United States, with the description of T.livingstoniorum sp.nov., Akshinthala K.S.K. Prasad, James A. Nienow, and Paul Hargraves
Does selective fishing conserve community biodiversity? Predictions from a length-based multispecies model, Marie Joëlle Rochet, Jeremy S. Collie, Simon Jennings, and Stephen J. Hall
Concept Tests for a New Wire Flying Vehicle Designed to Achieve High Horizontal Resolution Profiling in Deep Water, Chris Roman and Dave Hebert
Lagrangian floats as sea floor imaging platforms, Chris Roman, Gabrielle Inglis, and Bryan McGilvray
Development of High-Resolution Underwater Mapping Techniques, Christopher N. Roman, Gabrielle Inglis, J. Ian Vaughn, Stefan Williams, Oscar Pizarro, Ariell Friedman, and Daniel Steinberg
A tale of two eddies: Diagnosing coherent eddies through acoustic remote sensing, T. Rossby, C. Flagg, P. Ortner, and C. Hu
Learning to Read the Oceans. Genomics of Marine Phytoplankton, Tatiana A. Rynearson and Brian Palenik
Development and use of polyethylene passive samplers to detect triclosans and alkylphenols in an Urban estuary, Victoria P. Sacks and Rainer Lohmann
Sensing the ocean, Thomas B. Sanford, Kathryn A. Kelly, and David M. Farmer
Scientific drilling in the Great Rift Valley: The 2005 Lake Malawi Scientific Drilling Project - An overview of the past 145,000years of climate variability in Southern Hemisphere East Africa, C. A. Scholz, A. S. Cohen, T. C. Johnson, J. King, M. R. Talbot, and E. T. Brown
Exploration of the Anaximander Mud Volcanoes, Timothy M. Shank, Santiago Herrera, Walter Cho, Christopher N. Roman, and Katherine L. Croff Bell
Remote Analysis of Grain Size Characteristic in Submarine Pyroclastic Deposits from Kolumbo Volcano, Greece, Clara Smart, D. P. Whitesell, Christopher N. Roman, and Steven Carey
Comparing species and ecosystem-based estimates of fisheries yields, John H. Steele, Dian J. Gifford, and Jeremy S. Collie
Mapping Shallow Coastal Ecosystems: A Case Study of a Rhode Island Lagoon, Mark Stolt, Michael Bradley, Jim Turenne, Maggie Payne, Eric Scherer, Giancarlo Cicchetti, Emily Shumchenia, Marisa Guarinello, John W. King, Jon Boothroyd, Bryan Oakley, Carol Thornber, and Pete August
On the Geostrophic Adjustment of an Isolated Lens: Dependence on Burger Number and Initial Geometry, Grant A. Stuart, Miles A. Sundermeyer, and Dave Hebert
Enhanced sorption of PAHs in natural-fire-impacted sediments from Oriole Lake, California, Julia Sullivan, Kevyn Bollinger, Anthony Caprio, Mark Cantwell, Peter Appleby, John King, Bertrand Ligouis, and Rainer Lohmann
Turbulent Airflow at Young Sea States with Frequent Wave Breaking Events: Large-Eddy Simulation, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
Non-linear Responses of a Coastal Aquatic Ecosystem to Large Decreases in Nutrient and Organic Loadings, David I. Taylor, Candace A. Oviatt, and David G. Borkman
Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323), Laura M. Wehrmann, Nils Risgaard-Petersen, Heather N. Schrum, Emily A. Walsh, Youngsook Huh, Minoru Ikehara, Catherine Pierre, Steven D'Hondt, Timothy G. Ferdelman, Ana Christina Ravelo, Kozo Takahashi, and Carlos Alvarez Zarikian
Simulating the time-dependent diffusion coefficient in mixed-pore-size materials, Zhigang Zhang, David L. Johnson, and Lawrence M. Schwartz
Manuscripts from 2010
A Regional Scale Modeling Analysis of Aerosol and Trace Gas Distributions over the Eastern Pacific During the INTEX-B Field Campaign, B. Adhikary, B. G. Heikes, and et al
Climate Variability, Oceanography, Bowhead Whale Distribution, and Iñupiat Subsistence Whaling near Barrow, Alaska, Carin J. Ashjian, Stephen R. Braund, Robert Campbell, J. C. "Craig" George, Jack Kruse, Wieslaw Maslowski, Sue E. Moore, Craig R. Nicolson, Stephen R. Okkonen, Barry F. Sherr, Evelyn B. Sherr, and Yvette H. Spitz
Transformation of an Agulhas eddy near the continental slope, S. Baker-Yeboah, G. R. Flieri, Georgi G. Sutyrin, and Y. Zhang
Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis, Derik Barseghian, Ilkay Altintas, Matthew B. Jones, Daniel Crawl, Nathan Potter, James Gallagher, Peter Cornillon, Mark Schildhauer, Elizabeth T. Borer, Eric W. Seabloom, and Parviez R. Hosseini
Gas bubbles as oceanographic tracers, Burkard Baschek and David M. Farmer
Identification and determination of trinitrotoluenes and their degradation products using liquid chromatography-electrospray ionization mass spectrometry, Jitka Bečanová, Zdeněk Friedl, and Zdeněk Šimek
Robotic tools for deep water archaeology: Surveying an ancient shipwreck with an autonomous underwater vehicle, Brian Bingham, Brendan Foley, Hanumant Singh, Richard Camilli, Katerina Delaporta, Ryan Eustice, Angelos Mallios, David Mindell, Christopher Roman, and Dimitris Sakellariou
Records of large earthquakes in lake sediments along the North Anatolian Fault, Turkey, X. Boës, S. B. Moran, J. King, M. N. Cağatay, and A. Hubert-Ferrari
Preliminary and novel estimates of CO2 gas transfer using a satellite scatterometer during the 2001GasEx experiment, Darek Bogucki, Mary Elena Carr, William M. Drennan, Peter Woiceshyn, Tetsu Hara, and Marjorie Schmeltz
Short- and Medium-Range Prediction of Tropical and Transitioning Cyclone Tracks within the NCEP Global Ensemble Forecasting System, Christian E. Buckingham, Timothy Marchok, Isaac Ginis, Lewis M. Rothstein, and Dail Rowe
Toward linking ocean models to fish population dynamics, Lawrence J. Buckley and Lauren B. Buckley
Temporal trends of triclosan contamination in dated sediment cores from four urbanized estuaries: Evidence of preservation and accumulation, Mark G. Cantwell, Brittan A. Wilson, Jun Zhu, Gordon T. Wallace, John W. King, Curtis R. Olsen, Robert M. Burgess, and Joseph P. Smith
The past, present, and future of the AVHRR pathfinder SST program, Kenneth S. Casey, Tess B. Brandon, Peter Cornillon, and Robert Evans
Poleward decrease in the isotope effect of nitrate assimilation across the Southern Ocean, Peter J. Difiore, Daniel M. Sigman, Kristen L. Karsh, Thomas W. Trull, Robert B. Dunbar, and Rebecca S. Robinson
Mapping Circulation in the Kuroshio Extension with an Array of Current and Pressure Recording Inverted Echo Sounders, Kathleen A. Donohue, D. Randolph Watts, Karen L. Tracey, Andrew D. Greene, and Maureen A. Kennelly
Impact of Mexico City Emissions on Regional Air Quality from MOZART-4 Simulations, L. K. Emmons, E. C. Apel, J. -F. Lamarque, P. G. Hess, M. Avery, D. Blake, W. Brune, T. Campos, J. Crawford, P. F. DeCarlo, S. Hall, B. G. Heikes, J. Holloway, J. L. Jimenez, D. J. Knapp, G. Kok, M. Mena-Carrasco, J. Olson, D. O'Sullivan, G. Sachse, J. Walega, P. Weibring, A. Weinheimer, and C. Wiedinmyer
Momentum Flux Budget across the Air–Sea Interface under Uniform and Tropical Cyclone Winds, Yalin Fan, Isaac Ginis, and Tetsu Hara
Field‐derived Henry's law constants for polychlorinated biphenyls in oceanic waters, Rosalinda Gioia, Kevin C. Jones, Rainer Lohmann, Luca Nizzetto, and Jordi Dachs
Marine habitat classification for ecosystem-based management: A proposed hierarchical framework, Marisa L. Guarinello, Emily J. Shumchenia, and John W. King
Differences between East Asian and Indian monsoon climate records during MIS3 attributed to differences in their driving mechanisms: Evidence from the loess record in the Sichuan basin, southwestern China and other continental and marine climate records, Wenxia Han, Xiaomin Fang, Shengli Yang, and John King
Climatic interpretation of a 1.9 Ma environmental magnetic record of loess deposition and soil formation in the central eastern Pampas of Buenos Aires, Argentina, Clifford W. Heil, John W. King, Marcelo A. Zárate, and Peter H. Schultz
Evidence from chlorin nitrogen isotopes for alternating nutrient regimes in the Eastern Mediterranean Sea, Meytal B. Higgins, Rebecca S. Robinson, Susan J. Carter, and Ann Pearson
Radiocarbon dating of individual lignin phenols: A new approach for establishing chronology of late quaternary lake sediments, Juzhi Hou, Yongsong Huang, Corynn Brodsky, Marcelo R. Alexandre, Ann P. McNichol, John W. King, Feng Sheng Hu, and Ji Shen
Sonar constrained stereo correspondence for three-dimensional seafloor reconstruction, Gabrielle Inglis and Chris Roman
Seasonal movement of the American horseshoe crab Limulus polyphemus in a semi-enclosed bay on Cape Cod, Massachusetts (USA) as determined by acoustic telemetry, Mary-Jane James-Pirri
Mantle melting as a function of water content beneath the Mariana arc, Katherine A. Kelley, Terry Plank, Sally Newman, Edward M. Stolper, Timothy L. Grove, Stephen Parman, and Erik H. Hauri
Emplacement of magma in Eastern Iceland dikes: Insights from magnetic fabric and rock magnetic analyses, C. Kissel, C. Laj, H. Sigurdsson, and H. Guillou
Simulations of tephra dispersal from the 1991 explosive eruptions of Hudson volcano, Chile, David J. Kratzmann, Steven N. Carey, Julie Fero, Roberto A. Scasso, and Jose Antonio Naranjo
Role of cryptic amphibole crystallization in magma differentiation at Hudson volcano, Southern Volcanic Zone, Chile, David J. Kratzmann, Steven Carey, Roberto A. Scasso, and Jose Antonio Naranjo
Simulating property exchange in estuarine ecosystem models at ecologically appropriate scales, James N. Kremer, Jamie M.P. Vaudrey, Dave S. Ullman, Deanna L. Bergondo, Nicole LaSota, Chris Kincaid, Dan L. Codiga, and Mark J. Brush
Using geological history of the Laurentian Great Lakes to better understand their future, C. F.M. Lewis, D. K. Rea, J. B. Hubeny, T. A. Thompson, S. M. Blasco, J. W. King, M. Reddin, and T. C. Moore
Deposition of Dissolved and Particulate-Bound Chemicals from the Surface Ocean, Rainer Lohmann and Jordi Dachs
Global aquatic passive sampling (AQUA-GAPS): Using passive samplers to monitor POPs in the waters of the world, Rainer Lohmann and Derek Muir
Response to comment on "global aquatic sampling (aqua-gaps): Using passive samplers to monitor pops in the waters of the world", Rainer Lohmann and Derek Muir
Increase in water column denitrification during the last deglaciation: the influence of oxygen demand in the eastern equatorial Pacific, P. Martinez and Rebecca S. Robinson
Role of mangroves as nurseries for French grunt Haemulon flavolineatum and schoolmaster Lutjanus apodus assessed by otolith elemental fingerprints, Ivan Mateo, Edward G. Durbin, Richard S. Appeldoorn, Aaron J. Adams, Francis Juanes, Richard Kingsley, Peter Swart, and Daisy Durant
Seasonal distribution of dissolved inorganic carbon and net community production on the Bering Sea shelf, J. T. Mathis, J. N. Cross, N. R. Bates, S. Bradley Moran, M. W. Lomas, C. W. Mordy, and P. J. Stabeno
Control system performance and efficiency for a mid-depth Lagrangian profiling float, Bryan McGilvray and Chris Roman
Drifters in the Gulf Stream, G. G. McGrath, T. Rossby, and J. T. Merrill
Inherent High Correlation of Individual Motility Enhances Population Dispersal in a Heterotrophic, Planktonic Protist, Susanne Menden-Deuer
Structure-dependent, protistan grazing and its implication for the formation, maintenance and decline of plankton patches, Susanne Menden-Deuer and Kerri Fredrickson
PAH mineralization and bacterial organotolerance in surface sediments of the Charleston Harbor estuary, Michael T. Montgomery, Thomas J. Boyd, Christopher L. Osburn, and David C. Smith
Dietary uptake from historically contaminated sediments as a source of pcbs to migratory fish and invertebrates in an urban estuary, Eric J. Morgan and Rainer Lohmann
Consistent grain size distribution of pedogenic maghemite of surface soils and Miocene loessic soils on the Chinese loess plateau, Junsheng Nie, Yougui Song, John W. King, and Ramon Egli
HIRM variations in the Chinese red-clay sequence: Insights into pedogenesis in the dust source area, Junsheng Nie, Yougui Song, John W. King, Xiaomin Fang, and Clifford Heil
Atlantic ocean surface waters buffer declining atmospheric concentrations of persistent organic pollutants, Luca Nizzetto, Rainer Lohmann, Rosalinda Gioia, Jordi Dachs, and Kevin C. Jones
A marked gradient in δ13C values of clams Mercenaria mercenaria across a marine embayment may reflect variations in ecosystem metabolism, Autumn J. Oczkowski, Michael E.Q. Pilson, and Scott W. Nixon
Plio-Pleistocene trends in ice rafted debris on the Lomonosov Ridge, Matthew O'Regan, Kristen St. John, Kathryn Moran, Jan Backman, John King, Brian A. Haley, Martin Jakobsson, Martin Frank, and Ursula Röhl
Distribution of deep near-inertial waves observed in the Kuroshio Extension, Jae Hun Park, Kathleen A. Donohue, D. Randolph Watts, and Luc Rainville
Blue is the desert color of the sea. Where does this sentence come from?, Michael E.Q. Pilson
Fore‐arc basalts and subduction initiation in the Izu‐Bonin‐ Mariana system, Mark K. Reagan, Osamu Ishizuka, Robert J. Stern, Katherine A. Kelley, Yasuhiko Ohara, Janne Blichert-Toft, Sherman H. Bloomer, Jennifer Cash, Patricia Fryer, Barry B. Hanan, Rosemary Hickey-Vargas, Teruaki Ishii, Jun-Ichi Kimura, David W. Peate, Michael C. Rowe, and Melinda Woods
South Atlantic mass transports obtained from subsurface float and hydrographic data, Regina R. Rodrigues, Mark Wimbush, D. Randolph Watts, Lewis M. Rothstein, and Michel Ollitrault
Application of Structured Light Imaging for High Resolution Mapping of Underwater Archaeological Sites, Chris Roman, Gabrielle Inglis, and James Rutter
Autonomous Underwater Vehicles as Tools for Deep-Submergence Archaeology, Christopher N. Roman and Ian Roderick Mather
On the variability of Gulf Stream transport from seasonal to decadal timescales, T. Rossby, C. Flagg, and K. Donohue
Coastal New England pilot study to determine fossil and biogenic formaldehyde source contributions using radiocarbon, Haiwei Shen, Brian G. Heikes, John T. Merrill, Ann P. McNichol, and Li Xu
Comparison of methods for integrating biological and physical data for marine habitat mapping and classification, E. J. Shumchenia and J. W. King
Evaluation of sediment profile imagery as a tool for assessing water quality in Greenwich Bay, Rhode Island, USA, Emily J. Shumchenia and John W. King
Impacts of Climate Change on Narragansett Bay, Leslie Smith, Sandra Whitehouse, and Candace A. Oviatt
Effects of the dioxin-like PCB 126 on larval summer flounder (Paralichthys dentatus), Bruno Soffientino, Diane E. Nacci, and Jennifer L. Specker
Asphalt volcanoes as a potential source of methane to late Pleistocene coastal waters, David L. Valentine, Christopher M. Reddy, Christopher Farwell, Tessa M. Hill, Oscar Pizarro, Dana R. Yoerger, Richard Camilli, Robert K. Nelson, Emily E. Peacock, Sarah C. Bagby, Brian A. Clarke, Christopher N. Roman, and Morgan Soloway
A multispecies age-structured assessment model for the Gulf of Alaska, Kray F. van Kirk, Terrance J. Quinn, and Jeremy S. Collie
Wavenumber Spectrum in the Gulf Stream from Shipboard ADCP Observations and Comparison with Altimetry Measurements, Dong-Ping Wang, Charles N. Flagg, Kathleen A. Donohue, and Hans Thomas Rossby
Gibbs energies of reaction and microbial mutualism in anaerobic deep subseafloor sediments of ODP Site 1226, Guizhi Wang, Arthur J. Spivack, and Steven D'Hondt
Modeling the impact of declining sea ice on the Arctic marine planktonic ecosystem, Jinlun Zhang, Yvette H. Spitz, Michael Steele, Carin Ashjian, Robert Campbell, Léo Berline, and Patricia Matrai
Cycling of PCBs and HCB in the surface ocean-lower atmosphere of the open pacific, Lin Zhang and Rainer Lohmann
Unsplit complex frequency-shifted PML implementation using auxiliary differential equations for seismic wave modeling, Wei Zhang and Yang Shen
Glacial geomorphology and glacial history of the Muzart River valley, Tianshan Range, China, Jingdong Zhao, Yougui Song, John W. King, Shiyin Liu, Jie Wang, and Min Wu
Dust Storms Come to Central and Southwestern China, Too: Implications from a Major Dust Event in Chongqing, Q. Zhao, K. He, K. A. Rahn, Y. Ma, Y. Jia, F. Yang, F. Duan, Y. Lei, G. Chen, Y. Cheng, H. Liu, and S. Wang
Manuscripts from 2009
A regional scale modeling analysis of aerosol and trace gas distributions over the eastern Pacific during the INTEX-B field campaign, D. Adhikary, Brian G. Heikes, and et al
Manifestation of the Pacific Decadal Oscillation in the Kuroshio, Magdalena Andres, Jae-Hun Park, Mark Wimbush, Xiao-Hua Zhu, Hirohiko Nakamura, Kuh Kim, and Kyung-Il Chang
Coastal Lagoons and Climate Change: Ecological and Social Ramifications in the U.S. Atlantic and Gulf Coast Ecosystems, Abigail Anthony, Joshua Atwood, Peter V. August, Carrie Byron, J. Stanley Cobb, Cheryl Foster, Crystal Fry, Arthur Gold, Kifle Hagos, Leanna Heffner, D. Q. Kellogg, Kimberly Lellis-Dibble, James J. Opaluch, Candace A. Oviatt, Anna Pfeiffer-Herbert, Nicole Rohr, Leslie Smith, Tiffany Smythe, Judith Swift, and Nathan Vinhateiro