All URI faculty publications that are in DigitalCommons@URI are listed here. Some articles include full-text PDFs, and some include links to the publications on journal sites. This list includes all articles that faculty members have chosen to deposit according to the URI Open Access Policy, as well as other articles. This is not a comprehensive list of scholarly publications by URI faculty members.

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Submissions from 2006

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Translocation of Molecules into Cells by pH-Dependent Insertion of a Transmembrane Helix, Yana K. Reshetnyak, Oleg A. Andreev, Ursula Lehnert, and Donald M. Engelman

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Assessment of formation strength from geophysical well logs using neural networks, Jason E. Ressler, Christopher D.P. Baxter, Kathryn Moran, Meghan Paulson, Ion Ispas, and Hans Vaziri

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An annotated catalog of salivary gland transcripts from Ixodes scapularis ticks, José M.C. Ribeiro, Francisco Alarcon-Chaidez, Ivo M. Ivo, Ben J. Mans, Thomas N. Mather, Jesus G. Valenzuela, and Stephen K. Wikel

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Trapping Phyllophaga spp. (Coleoptera: Scarabaeidae: Melolonthinae) in the United States and Canada Using Sex Attractants, Paul S. Robbins, Steven R. Alm, and et al

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Identification and Characterization of a Hemolysin Gene Cluster in Vibrio anguillarum, Jessica L. Rock and David R. Nelson

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Evaluating satellite sensor-derived indices for lyme disease risk prediction, Sarah E. Rodgers and Thomas N. Mather

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Exemplary multicultural training in school psychology programs, Margaret R. Rogers

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Exemplary efforts in psychology to recruit and retain graduate students of color, Margaret R. Rogers and Ludwin E. Molina

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Letter to the editor [2], Sara E. Rosenbaum and Fatemeh Akhlaghi

Trans-Atlantic correlations of Upper Cretaceous marine sediments: The Mid-Atlantic (USA) and Maastricht (Netherlands) regions, Marcus R. Ross and David E. Fastovsky

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Modeling Ocean ecosystems the PARADIGM program, Lewis M. Rothstein, John J. Cullen, Mark Abbott, Eric P. Chassignet, Ken Denman, Scott C. Doney, Hugh Ducklow, Katja Fennel, Mick Follows, Dale Haidvogel, Eileen Hofmann, David M. Karl, John Kindle, Ivan Lima, Mathew Maltrud, Chuck McClain, Dennis McGillicuddy, M. Josefina Olascoaga, Yvette Spitz, Jerry Wiggert, and James Yoder

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Critical examination of the use of coherent gradient sensing in measuring fracture parameters in functionally graded materials, Carl Ernst Rousseau

Mechanical and physical characterization of lightweight shotcrete used for repair, Paul Ruggiero, Arun Shukla, and Richard Brown

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Characteristics of egg production of the planktonic copepod, Calanus finmarchicus, on Georges Bank: 1994-1999, J. A. Runge, S. Plourde, P. Joly, B. Niehoff, and E. Durbin

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Estimating potential diapause duration in Calanus finmarchicus, Whitley J. Saumweber and Edward G. Durbin

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The 2005 Lake Malawi Scientific Drilling Project, Christopher A. Scholz, Andrew S. Cohen, Thomas C. Johnson, John W. King, and Kathryn Moran

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Quantifying and reducing the effects of wrong-path memory references in cache-coherent multiprocessor systems, Resit Sendag, Ayse Yilmazer, Joshua J. Yi, and Augustus K. Uht

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Paleoclimatic variations in West Africa from a record of late Pleistocene and Holocene lake level stands of Lake Bosumtwi, Ghana, Timothy M. Shanahan, Jonathan T. Overpeck, C. Winston Wheeler, J. Warren Beck, Jeffrey S. Pigati, Michael R. Talbot, Christopher A. Scholz, John Peck, and John W. King

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Guest editorial: Wireless network security, Xuemin Shen, Chuang Lin, Yan Sun, Jianping Pan, Peter Langendoerfer, and Zhenfu Cao

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Anti-influenza prodrug oseltamivir is activated by carboxylesterase human carboxylesterase 1, and the activation is inhibited by antiplatelet agent clopidogrel, Deshi Shi, Jian Yang, Dongfang Yang, Edward L. LeCluyse, Chris Black, Li You, Fatemeh Akhlaghi, and Bingfang Yan

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Denormalization strategies for data retrieval from data warehouses, Seung Kyoon Shin and G. Lawrence Sanders

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Dynamic crack propagation in particle reinforced nanocomposites and graded materials, A. Shukla

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Dynamic fracture mechanics, Arun Shukla

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Dynamic fracture of nanocomposite materials, Arun Shukla, Victor Évora, and Nitesh Jain

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Dynamic fracture in graded materials, Arun Shukla and Nitesh Jain

Dynamic crack initiation and propagation in nanocomposite materials, Arun Shukla, Venkitanarayanan Parameswaran, Ying Du, and Victor Évora

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Marine Investigations of Greece's Santorini Volcanic Field, Haraldur Sigurdsson, Steven Carey, Matina Alexandri, Georges Vougioukalakis, Katherine Croff, Chris Roman, Dimitris Sakellariou, Christos Anagnostou, Grigoris Rousakis, Chrysanti Ioakim, Aleka Goguo, Dionysis Ballas, Thanassis Misaridis, and Paraskevi Nomikou

A warmer climate for women in engineering, Barb Silver, G. Boudreaux-Bartels, Helen Mederer, Lynn Pasquerella, Joan Peckham, Mercedes River-Hudec, and Karen Wishner

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Subtropical Arctic Ocean temperatures during the Palaeocene/Eocene thermal maximum, Appy Sluijs, Stefan Schouten, Mark Pagani, Martijn Woltering, Henk Brinkhuis, Jaap S. Sinninghe Damsté, Gerald R. Dickens, Matthew Huber, Gert Jan Reichart, Ruediger Stein, Jens Matthiessen, Lucas J. Lourens, Nikolai Pedentchouk, Jan Backman, Kathryn Moran, Steve Clemens, Thomas Cronin, Frédérique Eynaud, Jérôme Gattacceca, Martin Jakobsson, Ric Jordan, Michael Kaminski, John King, Nalân Koc, Nahysa C. Martinez, David McInroy, Theodore C. Moore, Matthew O'Regan, Jonaotaro Onodera, Heiko Pälike, Brice Rea, Domenico Rio, Tatsuhiko Sakamoto, David C. Smith, Kristen E.K. St John, and Itsuki Suto

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Data report: Dissolved organic carbon in interstitial waters, equatorial Pacific and Peru margin, ODP Leg 201, David C. Smith

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The Sedimentary Environment Below Earth’s Polar Ice Cap as a Microbial Habitat, David C. Smith, Stephanie Forschner-Dancause, David C. Rowley, and Steven D'Hondt

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New bisanthraquinone antibiotics and semi-synthetic derivatives with potent activity against clinical Staphylococcus aureus and Enterococcus faecium isolates, Aaron M. Socha, L. LaPlante, and David C. Rowley

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Stochastic line search using UUVs, Maribir Sodhi, Peter Swaszek, and Edoardo Bovio

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Developmental changes in stomach, intestine, and skin glycoconjugates in summer flounder (Paralichthys dentatus): A lectin histochemical study, Bruno Soffientino, Marta Gomez-Chiarri, and Jennifer Specker

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A versatile and sensitive tritium-based radioassay for measuring hydrogenase activity in aquatic sediments, Bruno Soffientino, Arthur J. Spivack, David C. Smith, Edward B. Roggenstein, and Steven D'Hondt

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Surface wind response to oceanic fronts, Qingtao Song, Peter Cornillon, and Tetsu Hara

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Integrating psychotherapy and pharmacotherapy: Myths and the missing link, Jacqueline A. Sparks, Barry L. Duncan, and Scott D. Miller

A hierarchy of stochastic particle models for search and rescue (SAR): Application to predict surface drifter trajectories using HF radar current forcing, Malcolm L. Spaulding, Tatsu Isaji, Paul Hall, and Arthur A. Allen

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Application of COASTMAP as an initial demonstration of the national backbone of the Integrated Ocean Observing System (IOOS), M. L. Spaulding, E. Howlett, M. Ward, D. Lohaus, C. Galagan, T. Isaji, G. De Wardener, T. Giguere, J. Patel, and K. Knee

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Determination of in situ methane based on analysis of void gas, Arthur J. Spivack, Craig McNeil, Nils G. Holm, and Kai Uwe Hinrichs

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Effects of motivational interviewing for incarcerated adolescents on driving under the influence after release, L. A.R. Stein, Suzanne M. Colby, Nancy P. Barnett, Peter M. Monti, Charles Golembeske, and Rebecca Lebeau-Craven

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Flexible foil exercise and shoulder internal and external rotation strength, Daisuke Sugimoto and Peter Blanpied

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Combined Eulerian-Lagrangian or pseudo-Lagrangian descriptions of waves caused by an advancing free surface disturbance, Hong Gun Sung and Stéphan T. Grilli

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A trust evaluation framework in distributed networks: Vulnerability analysis and defense against attacks, Yan Lindsay Sun, Zhu Han, Wei Yu, and K. J. Ray Liu

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Attacks on trust evaluation in distributed networks, Yan Lindsay Sun, Zhu Han, Wei Yu, and K. J. Ray Liu

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Information theoretic framework of trust modeling and evaluation for ad hoc networks, Yan Lindsay Sun, Wei Yu, Zhu Han, and K. J. Ray Liu

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A new approach to simulation of LNG spills in the ocean, J. Craig Swanson and Malcolm Spaulding

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Pharmacist-led cardiac risk reduction model., Tracey H. Taveira, Wu, Oanh J. Martin, Mark D. Schleinitz, Peter Friedmann, and Satish C. Sharma

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Geometry of separation boundaries: Systems with reaction, Ross Taylor, Amanda Miller, and Angelo Lucia

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Role of Gluconeogenesis and the Tricarboxylic Acid Cycle in the Virulence of Salmonella enterica Serovar Typhimurium in BALB/c Mice, Merlin Tchawa Yimga, Mary P. Leatham, James H. Allen, David C. Laux, Tyrrell Conway, and Paul S. Cohen

Blast loaded thin composite plates - An experimental study, S. Arjun Tekalur, Arun Shukla, and Paul Ruggiero

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Evaluation of a lifetime-based optode to measure oxygen in aquatic systems, Anders Tengberg, Jostein Hovdenes, Henrik Johan Andersson, Olivier Brocandel, Robert Diaz, David Hebert, Tony Arnerich, Christian Huber, Arne Körtzinger, Alexis Khripounoff, Francisco Rey, Christer Rönning, Jens Schimanski, Stefan Sommer, and Achim Stangelmayer

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Exploring the connections between ferries and urban form: Some considerations before jumping on board, Robert Thompson, Richard Burroughs, and Tiffany Smythe

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Functional properties of the isomorphic biphasic algal life cycle, Carol S. Thornber

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Tissue type matters: Selective herbivory on different life history stages of an isomorphic alga, Carol Thornber, John J. Stachowicz, and Steven Gaines

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Translating best practices in nondrug postoperative pain management, Susanne Tracy, Dufault, Stephen Kogut, Valerie Martin, Susan Rossi, and Cynthia Willey-Temkin

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Assessing habitat selection by foraging egrets in salt marshes at multiple spatial scales, Carol Lynn Trocki and Peter W.C. Paton

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Comparison of two foraging habitats used by glossy ibis during the breeding season in Rhode Island, Carol Lynn Trocki and Peter W.C. Paton

A non chromate conversion coating process for corrosion protection of AL2024 aluminium alloys in a marine environment, W. C. Tucker, M. G. Medeiros, R. Brown, and D. Maddala

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An algorithm for estimating bridge deflection from accelerometer measurements, Richard J. Vaccaro, Mayrai Gindy, Hani Nassif, and Jana Velde

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A measurement model of women's behavioral risk taking, Carol VanZile-Tamsen, Maria Testa, Jennifer A. Livingston, and Lisa L. Harlow

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Personal reflections: Barriers and strategies in increasing diversity in psychology, Melba J.T. Vasquez, Bernice Lott, Enedina García-Vázquez, Sheila K. Grant, Gayle Y. Iwamasa, Ludwin E. Molina, Brian L. Ragsdale, and Elise Vestal-Dowdy

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Adaptation for water balance in the partial gastrointestinal tract of summer flounder, Philip A. Veillette, Jason P. Breves, Danielle R. Reardon, and Jennifer L. Specker

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Evaluating nicotine replacement therapy and stage-based therapies in a population-based effectiveness trial, Wayne F. Velicer, Robert H. Friedman, Joseph L. Fava, Suzy B. Gulliver, Stefan Keller, Xiaowu Sun, Harley Ramelson, and James O. Prochaska

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Tailored communications for smoking cessation: Past successes and future directions, Wayne F. Velicer, James O. Prochaska, and Colleen A. Redding

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Correlation between cyclic resistance ratios of intact and reconstituted offshore saturated sands and silts with the same shear wave velocity, Jian Hua Wang, Kathryn Moran, and Christopher D.P. Baxter

A human factors study on graphic-aided dynamic message signs, Jyh Hone Wang and Siamak Hesar

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Real time decomposition of speech into modulated components, Yadong Wang and Ramdas Kumaresan

Impacts of land-cover change on the national parks of the Northeast Temperate Network, Y. Q. Wang, Jarunee Nugranad, Gregory Bonynge, Christine Slinko, Gregory Shriver, and Brian Mitchell

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A new strategy to produce active human Src from bacteria for biochemical study of its regulation, Yue Hao Wang, Marina K. Ayrapetov, Xiaofeng Lin, and Gongqin Sun

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Effect of residual monomer on the spectroscopic properties of polythiophenes, Yu Wang, Ashley A. Mills, William B. Euler, and Brett L. Lucht

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Oritavancin - An investigational glycopeptide antibiotic, Kristina E. Ward, Tracey L. Mersfelder, and Kerry L. LaPlante

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Currents, Eddies, and a "Fish Story" in the Southwestern Japan/East Sea, D. Randolph Watts, Mark Wimbush, Karen L. Tracey, William J. Teague, Jae-Hun Park, Douglas A. Mitchell, Jong-Hwan Yoon, Moon-Sik Suk, and Kyung-Il Chang

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A response to Ryan (2006) [2], Amy L. Weiss

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Geochemical cycling of fluorine, chlorine, bromine, and boron and implications for fluid-rock reactions in Mariana forearc, South Chamorro Seamount, ODP Leg 195, Wei Wei, Miriam Kastner, Annette Deyhle, and Arthur J. Spivack

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Exhibition review batik from courts and palaces: The rudolf smend collection and batik fashion/American style, Linda Welters

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Exhibition review matisse: The fabric of dreams, Linda Welters

A new method for vibration modal analysis, Zhou Wenliang and David Chelidze

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Cold-water coral mounds revealed, Trevor Williams, Akihiro Kano, Timothy Ferdelman, Jean Pierre Henriet, Kohei Abe, Miriam S. Andres, Morten Bjerager, Emily L. Browning, Barry A. Cragg, Ben De Mol, Boris Dorschel, Anneleen Foubert, Tracy D. Frank, Yuji Fuwa, Philippe Gaillot, Jamshid J. Gharib, Jay M. Gregg, Veerle Ann Ida Huvenne, Philippe Léonide, Xianghui Li, Kai Mangelsdorf, Akiko Tanaka, Xavier Monteys, Ivana Novosel, Saburo Sakai, Vladimir A. Samarkin, Keiichi Sasaki, Arthur J. Spivack, Chizuru Takashima, and Jürgen Titschack

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Monitoring food web changes in tide-restored salt marshes: A carbon stable isotope approach, Andrew S. Wozniak, Charles T. Roman, Sam C. Wainright, Richard A. McKinney, and Mary Jane James-Pirri

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Fritz Eichenberg's Saint Francis: Showing Humanity's Duality, Sarina Wyant

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Thermal reactions of mesocarbon microbead (MCMB) particles in LiPF6-based electrolyte, Ang Xiao, Wentao Li, and Brett L. Lucht

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Implementation and performance evaluation of two snapshot methods on iSCSI target storages, Weijun Xiao, Yinan Liu, Qing Yang, Jin Ren, and Changsheng Xie

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TEA: Transmission error approximation for distance estimation between two zigbee devices, Weijun Xiao, Yan Sun, Yinan Liu, and Qing Yang

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TEA: Transmission error approximation for distance estimation between two zigbee devices, Weijun Xiao, Yan Sun, Yinan Liu, and Qing Yang

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Message from MTUC-06 Workshop Chairs, Zhiyong Xu, Laurence T. Yang, Alex Zhaoyu Liu, Shu Ching Chen, Wasfi G. Al-Khatib, Ramazan S. Aygun, Liwu Chang, Han Chieh Chao, Ing Ray Chen, Shigang Chen, Xiaowen Chu, John Sum, Mieso Denko, Zongming Fei, Xubin He, Yiming Hu, Tao Jiang, James B.D. Joshi, Ismail Khalil Ibrahim, Yan Luo, Geyong Min, Aaron J. Quigley, Mei Ling Shyu, Sabin Tabirca, Tsutomu Terada, Guojun Wang, Jun Wang, Qing Yang, and Xiaochuan Yi

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Using AXBTS to improve the performance of coupled hurricane-ocean models, Richard M. Yablonsky, Isaac Ginis, Eric W. Uhlhorn, and Aleksandr Falkovich

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Construction of a single nucleotide polymorphism linkage map for the silkworm, Bombyx mori, based on bacterial artificial chromosome end sequences, Kimiko Yamamoto, Junko Narukawa, Keiko Kadono-Okuda, Junko Nohata, Motoe Sasanuma, Yoshitaka Suetsugu, Yutaka Banno, Hiroshi Fujii, Marian R. Goldsmith, and Kazuei Mita

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On performance of parallel iSCSI protocol for networked storage systems, Qing Yang

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Continuous data protection in iSCSI storages, Qing Yang, Weijun Xiao, and Jin Ren

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PRINS: Optimizing performance of reliable internet storages, Qing Yang, Weijun Xiao, and Jin Ren

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TRAP-array: A disk array architecture providing timely recovery to any point-in-time, Qing Yang, Weijun Xiao, and Jin Ren

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Secondary current density distribution analysis of an aluminum-air cell, Shaohua Yang, Weiqian Yang, Gongquan Sun, and Harold Knickle

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Synthesis and characterization of enantiomeric anti-2-fluorobenzo[a]pyrene- 7,8-dihydrodiol-9,10-epoxides and their 2′-deoxyguanosine and oligodeoxynucleotide adducts, Tianle Yang, Yanhe Huang, and Bongsup P. Cho

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Frequency-dependent crustal correction for finite-frequency seismic tomography, Ting Yang and Yang Shen

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Upper mantle structure beneath the Azores hotspot from finite-frequency seismic tomography, Ting Yang, Yang Shen, Suzan van der Lee, Sean C. Solomon, and Shu Huei Hung

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Energy-efficient reliable transmission protocol with outsourcing in WSNs, Yafei Yang and Yan Sun

Analyzing the processor bottlenecks in SPEC CPU 2000, Joshua J. Yi, Ajay Joshi, Resit Sendag, Lieven Eeckhout, and David J. Lilja

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Evaluating benchmark subsetting approaches, Joshua J. Yi, Resit Sendag, Lieven Eeckhout, Ajay Joshi, David J. Lilja, and Lizy K. John

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Apparent clearance of sirolimus in heart transplant recipients: Impact of primary diagnosis and serum lipids, Hamim Zahir, Anne M. Keogh, and Fatemeh Akhlaghi