Publications from the faculty and research scientists of the Graduate School of Oceanography.
Manuscripts from 2014
Basaltic Volcaniclastics from the Challenger Deep Forearc Segment, Mariana Convergent Margin: Implications for Tectonics and Magmatism of the Southernmost Izu–Bonin–Mariana Arc, Robert J. Stern, Minghua Ren, Katherine A. Kelley, Yasuhiko Ohara, Fernando Martinez, and Sherman H. Bloomer
Typification and taxonomy of Gyrosigma tenuissimum (W. Sm.) J.W. Griffith & Henfr., comparison with Gyrosigma coelophilum N. Okamoto & Nagumo and description of two new taxa: Gyrosigma tenuissimum var. gundulae var. nov. and Gyrosigma baculum sp. nov. (Pleurosigmataceae, Bacillariophyta), Frithjof A.S. Sterrenburg, Myriam D. De Haan, Wulf E. Herwig, and Paul E. Hargraves
Impact of Dominant Breaking Waves on Air–Sea Momentum Exchange and Boundary Layer Turbulence at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
Mercury bioaccumulation in cartilaginous fishes from Southern New England coastal waters: Contamination from a trophic ecology and human health perspective, David L. Taylor, Nicholas J. Kutil, Anna J. Malek, and Jeremy S. Collie
An Anomalous Near-Bottom Cross-Shelf Intrusion of Slope Water on the Southern New England Continental Shelf, D. S. Ullman, D. L. Codiga, A. Pfeiffer-Herbert, and Christopher R. Kincaid
The Mw 6.5 offshore Northern California earthquake of 10 January 2010: Ordinary stress drop on a high‐strength fault, Meng Wei and Jeffrey J. McGuire
Mesoscale Convective System Surface Pressure Anomalies Responsible for Meteotsunamis Along the U.S. East Coast on June 13th, 2013, Christina A. Wertman, Richard M. Yablonsky, Yang Shen, John Merrill, Christopher R. Kincaid, and Robert A. Pockalny
Below the Disappearing Marshes of an Urban Estuary: Historic Nitrogen Trends and Soil Structure, Cathleen Wigand, Charles T. Roman, Earl Davey, Mark Stolt, Roxanne Johnson, Alana Hanson, Elizabeth B. Watson, S. Bradley Moran, Donald R. Cahoon, James C. Lynch, and Patricia Rafferty
A comparison of vessel-mounted acoustic doppler current profiler and satellite altimeter estimates of sea surface height and transports between New Jersey and Bermuda along the CMV Oleander route, Jessica S. Worst, Kathleen A. Donohue, and T. Rossby
The great 2012 Arctic Ocean summer cyclone enhanced biological productivity on the shelves, Jinlun Zhang, Robert Campbell, Victoria Hill, Yvette H. Spitz, and Michael Steele
Manuscripts from 2013
The Great Whirl: Observations of its seasonal development and interannual variability, L. M. Beal and K. A. Donohue
Submarine evidence of a debris avalanche deposit on the eastern slope of Santorini volcano, Greece, Katherine Lynn Croff Bell, Steven N. Carey, Paraskevi Nomikou, Haraldur Sigurdsson, and Dimitris Sakellariou
Divergent Eddy Heat Fluxes in the Kuroshio Extension at 144°–148°E. Part I: Mean Structure, Stuart P. Bishop, D. Randolph Watts, and Kathleen A. Donohue
Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study, Philip W. Boyd, Tatiana A. Rynearson, Evelyn A. Armstrong, Feixue Fu, Kendra Hayashi, Zhangxi Hu, David A. Hutchins, Raphael M. Kudela, Elena Litchman, Margaret R. Mulholland, Uta Passow, Robert F. Strzepek, Kerry A. Whittaker, Elizabeth Yu, and Mridul K. Thomas
The contribution of eddies to striations in absolute dynamic topography, C. E. Buckingham and Peter C. Cornillon
Predation on Prerecruits Can Delay Rebuilding of Depleted Cod Stocks, Jeremy Collie, Cóilín Minto, Boris Worm, and Richard Bell
Rebuilding fish communities: the ghost of fisheries past and the virtue of patience, Jeremy Collie, Marie-Joëlle Rochet, and Richard Bell
Marine spatial planning in practice, Jeremy S. Collie, W. L. Vic Adamowicz, Michael W. Beck, Bethany Craig, Timothy E. Essington, David Fluharty, Jake Rice, and James N. Sanchirico
Nature and extent of the deep biosphere, Frederick S. Colwell and Steven D'Hondt
Redox heterogeneity in MORB as a function of mantle source, Elizabeth Cottrell and Katherine A. Kelley
Evaluating the performance of a multispecies statistical catch-at-age model, Kiersten L. Curti, Jeremy S. Collie, Christopher M. Legault, and Jason S. Link
Sulfur degassing at Erta Ale (Ethiopia) and Masaya (Nicaragua) volcanoes: Implications for degassing processes and oxygen fugacities of basaltic systems, J. M. de Moor, T. P. Fischer, Z. D. Sharp, P. L. King, M. Wilke, R. E. Botcharnikov, E. Cottrell, M. Zelenski, B. Marty, K. Klimm, C. Rivard, D. Ayalew, C. Ramirez, and Katherine A. Kelley
Geochemistry: Subsurface sustenance, Steven D'Hondt
IODP Expedition 329: Life and Habitability Beneath the Seafloor of the South Pacific Gyre, Steven D'Hondt, Fumio Inagaki, and Carlos Alvarez Zarikian
Directions of seismic anisotropy in laboratory models of mantle plumes, K. A. Druken, C. Kincaid, and R. W. Griffiths
Envisioning a marine biodiversity observation network, J. Emmett Duffy, Linda A. Amaral-Zettler, Daphne G. Fautin, Gustav Paulay, Tatiana A. Rynearson, Heidi M. Sosik, and John J. Stachowicz
Assessment and Use of NGR Instrumentation on the JOIDES Resolution to Quantify U, Th, and K Concentrations in Marine Sediment, Ann G. Dunlea, Richard W. Murray, Robert N. Harris, Maxim A. Vasiliev, Helen Evans, Arthur J. Spivack, and Steven D'Hondt
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome, Bryndan P. Durham, Jana Grote, Kerry A. Whittaker, Sara J. Bender, Haiwei Luo, Sharon L. Grim, Julia M. Brown, John R. Casey, Anthony Dron, Lennin Florez-Leiva, Andreas Krupke, Catherine M. Luria, Aric H. Mine, Olivia D. Nigro, Santhiska Pather, Agathe Talarmin, Emma K. Wear, Thomas S. Weber, Jesse M. Wilson, Matthew J. Church, Edward F. DeLong, David M. Karl, Grieg F. Steward, John M. Eppley, Nikos C. Krypides, Stephan Schuster, and Michael S. Rappé
Equatorial Pacific peak in biological production regulated by nutrient and upwelling during the late Pliocene/early Pleistocene cooling, J. Etourneau, Rebecca S. Robinson, P. Martinez, and R. Schneider
Intrusive dike complexes, cumulate cores, and the extrusive growth of Hawaiian volcanoes, Ashton F. Flinders, Garrett Ito, Michael O. Garcia, John M. Sinton, Jim Kauahikaua, and Brian Taylor
Comparing sediment equilibrium partitioning and passive sampling techniques to estimate benthic biota PCDD/F concentrations in Newark Bay, New Jersey (U.S.A.), Carey L. Friedman and Rainer Lohmann
The acceleration of oceanic denitrification during deglacial warming, Eric D. Galbraith, Markus Kienast, Ana Luiza Luiza Albuquerque, Mark A. Altabet, Fabian Batista, Daniele Bianchi, Stephen E. Calvert, Sergio Contreras, Xavier Crosta, Ricardo De Pol-Holz, Nathalie Dubois, Johan Etourneau, Roger Francois, Ting Chang Hsu, Tara Ivanochko, Samuel J. Jaccard, Shuh Ji Kao, Thorsten Kiefer, Stephanie Kienast, Moritz F. Lehmann, Philippe Martinez, Matthew McCarthy, Anna Nele Meckler, Alan Mix, Jürgen Möbius, Tom F. Pedersen, Laetitia Pichevin, Tracy M. Quan, Rebecca S. Robinson, Evgeniya Ryabenko, Andreas Schmittner, Ralph Schneider, Aya Schneider-Mor, Masahito Shigemitsu, Dan Sinclair, and Christopher Somes
The mean composition of ocean ridge basalts, Allison Gale, Colleen A. Dalton, Charles H. Langmuir, Yongjun Su, and Jean-Guy Schilling
Atmospheric transport, cycling and dynamics of polychlorinated biphenyls (PCBs) from source regions to remote oceanic areas, Rosalinda Gioia, Jordi Dachs, Luca Nizzetto, Rainer Lohmann, and Kevin C. Jones
Vibrio cholerae Exploits Sub-Lethal Concentrations of a Competitor-Produced Antibiotic to Avoid Toxic Interactions, Jason R. Graff, Stephanie Forschner-Dancause, Susanne Menden-Deuer, Richard A. Long, and David C. Rowley
Swim Speed, Behavior, and Movement of North Atlantic Right Whales (Eubalaena glacialis) in Coastal Waters of Northeastern Florida, USA, James H.W. Hain, Joy D. Hampp, Shelia A. McKenney, Julie A. Albert, and Robert D. Kenney
Avoidance and attraction: Chemical cues influence predator-prey interactions of planktonic protists, Elizabeth L. Harvey, Hae Jin Jeong, and Susanne Menden-Deuer
A low‐relief shield volcano origin for the South Kaua‘i Swell, Garrett Ito, Michael O. Garcia, John R. Smith, Brian Taylor, Ashton Flinders, Brian Jicha, Seiko Yamasaki, Dominique Weis, Lisa Swinnard, and Chuck Blay
The 1815 Tambora ash fall: Implications for transport and deposition of distal ash on land and in the deep sea, Jessica Kandlbauer, Steven N. Carey, and R. Stephen J. Sparks
Composition of plume-influenced mid-ocean ridge lavas and glasses from the Mid-Atlantic Ridge, East Pacific Rise, Galápagos spreading center, and Gulf of Aden, Katherine A. Kelley, Richard Kingsley, and Jean Guy Schilling
Feasibility of using low density polyethylene sheets to detect atmospheric organochlorine pesticides in Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann
Field Calibration of Low Density Polyethylene Passive Samplers for Gaseous POPs, Mohammed A. Khairy and Rainer Lohmann
Source Apportionment and Risk Assessment of Polycyclic Aromatic Hydrocarbons in the Atmospheric Environment of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann
New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece, Stephanos P. Kilias, Paraskevi Nomikou, Dimitrios Pappanikolaou, Paraskevi N. Polymenakou, Athanasios Godelitsas, Ariadne Argyraki, Steven Carey, Platon Gamaletsos, Theo J. Mertzimekis, Elenie Stathopoulou, Joerg Goettlicher, Ralph Steininger, Konstantina Betzelou, Isidoros Livanos, Christos Christakis, Katherine Croff Bell, and Michael Scoullos
Reliability of rapid, semi-automated assessment of plankton abundance, biomass, and growth rate estimates: Coulter Counter versus light microscope measurements, Hyewon Kim and Susanne Menden-Deuer
PH alters the swimming behaviors of the raphidophyte Heterosigma akashiwo: Implications for bloom formation in an acidified ocean, Hyewon Kim, Arthur J. Spivack, and Susanne Menden-Deuer
Bifurcation of the Yellowstone plume driven by subduction-induced mantle flow, C. Kincaid, K. A. Druken, R. W. Griffiths, and D. R. Stegman
Steady late quaternary slip rate on the Cinarcik section of the North Anatolian fault near Istanbul, Turkey, Hulya Kurt, C. C. Sorlien, L. Seeber, M. S. Steckler, D. J. Shillington, G. Cifci, Marie-Helene Cormier, J.-X. Dessa, O. Atgin, D. Dondurur, E. Demirbag, S. Okay, C. Imren, S. Gurcay, and H. Carton
SCIMPI: A New Borehole Observatory, T. Lado-Insua, K. Moran, I. Kulin, S. Farrington, and J. B. Newman
Shear wave structure in the northeastern Tibetan Plateau from Rayleigh wave tomography, Lun Li, Aibing Li, Yang Shen, Eric A. Sandvol, Danian Shi, Hongyi Li, and Xinfu Li
Vertical Eddy Diffusion as a Key Mechanism for Removing Perfluorooctanic Acid (PFOA) from the Global Surface Oceans, Rainer Lohmann, Elena Jurado, Henk A. Dijkstra, and Jordi Dachs
Concentrations, Fluxes and Residence Time of PBDEs Across the Tropical Atlantic Ocean, Rainer Lohmann, Jana Klanova, Petr Kukucka, Shifra Yonis, and Kevyn Bollinger
PAHs on a west-to-east transect across the tropical Atlantic Ocean, Rainer Lohmann, Jana Klanova, Petra Pribylova, Hana Liskova, Shifra Yonis, and Kevyn Bollinger
(Viewpoint): Science Should Guide TSCA Reform, Rainer Lohmann, Heather M. Stapleton, and Ronald A. Hites
Fluid Interactions That Enable Stealth Predation by the Upstream-Foraging Hydromedusa Craspedacusta sowerbyi, K. Lucas, S. P. Colin, J. H. Costello, K. Katja, and E. Klos
Climatic Variability of the Circulation in the Rhode Island Sound: A Modeling Study, Yiyong Luo, Lew Rothstein, Qianqian Liu, and Shuwen Zhang
Chlorine dioxide as a treatment for ballast water to control invasive species: Shipboard testing, Lucie Maranda, Annie M. Cox, Robert G. Campbell, and David C. Smith
Cleaning methods for the isotopic determination of diatombound nitrogen in non-fossil diatom frustules, Laura V. Morales, Daniel M. Sigman, Matthew G. Horn, and Rebecca S. Robinson
Water as a New Matrix for Global Assessment of Hydrophilic POPs, Derek Muir and Rainer Lohmann
Characterizing the superparamagnetic grain distribution of Chinese red-clay sequences by thermal fluctuation tomography, Junsheng Nie, Mike Jackson, John King, and Xiaomin Fang
Six million years of magnetic grain-size records reveal that temperature and precipitation were decoupled on the Chinese Loess Plateau during ~4.5-2.6Ma, Junsheng Nie, Yougui Song, John W. King, Rui Zhang, and Xiaomin Fang
Morphological analysis and related volcanic features of the Kolumbo submarine volcanic chain (NE of Santorini Island, Aegean Volcanic Arc), Paraskevi Nomikou, Steven Carey, Katherine L.Croff Bell, Dimitros Papanikolaou, Konstantina Bejelou, Matina Alexandri, Kat Cantner, and Julie Fero Martin
The state of Lake Simcoe (Ontario, Canada): The effects of multiple stressors on phosphorus and oxygen dynamics, R. L. North, D. Barton, A. S. Crowe, P. J. Dillon, R. M.L. Dolson, D. O. Evans, B. K. Ginn, L. Håkanson, J. Hawryshyn, H. Jarjanazi, J. W. King, J. K.L. La Rose, L. León, C. F.M. Lewis, G. E. Liddle, Z. H. Lin, F. J. Longstaffe, R. A. Macdonald, L. Molot, T. Ozersky, M. E. Palmer, R. Quinlan, M. D. Rennie, M. M. Robillard, D. Rodé, K. M. Rühland, A. Schwalb, J. P. Smol, E. Stainsby, J. J. Trumpickas, J. G. Winter, and J. D. Young
Microbial activity in the marine deep biosphere: progress and prospects, Beth N. Orcutt, Douglas E. LaRowe, Jennifer F. Biddle, Frederick S. Colwell, Brian T. Glazer, Brandi Kiel Reese, John B. Kirkpatrick, Laura L. Lapham, Heath J. Mills, Jason B. Sylvan, Scott D. Wankel, and C. Geoff Wheat
Effects of Kuroshio intrusions on nonlinear internal waves in the South China Sea during winter, Jae Hun Park and David Farmer
Heterogeneities from the first 100 million years recorded in deep mantle noble gases from the Northern Lau Back-arc Basin, Maria K. Peto, Sujoy Mukhopadhyay, and Katherine A. Kelley
Why do mafic arc magmas contain ~4wt% water on average?, Terry Plank, Katherine A. Kelley, Mindy M. Zimmer, Erik H. Hauri, and Paul J. Wallace
The stable vanadium isotope composition of the mantle and mafic lavas, J. Prytulak, S. G. Nielsen, D. A. Ionov, A. N. Halliday, J. Harvey, K. A. Kelley, Y. L. Niu, D. W. Peate, K. Shimizu, and K. W.W. Sims
The challenges of using polyethylene passive samplers to determine dissolved concentrations of parent and alkylated PAHs under cold and saline conditions, Pamela J. Reitsma, Dave Adelman, and Rainer Lohmann
Diagenetic aluminum uptake into diatom frustules and the preservation of diatom-bound organic nitrogen, Haojia Ren, Brigitte G. Brunelle, Daniel M. Sigman, and Rebecca S. Robinson
Nature and distribution of slab-derived fluids and mantle sources beneath the Southeast Mariana forearc rift, Julia M. Ribeiro, Robert J. Stern, Katherine A. Kelley, Fernando Martinez, Osamu Ishizuka, William I. Manton, and Yasuhiko Ohara
Geodynamic Evolution of a Forearc Rift in the Southernmost Mariana Arc, Julia M. Ribeiro, Robert J. Stern, Fernando Martinez, Osamu Ishizuka, Susan G. Merle, Katherine Kelley, Elizabeth Y. Anthony, Minghua Ren, Yasuhiko Ohara, Mark Reagan, Guillaume Girard, and Sherman Bloomer
How Do Fishing and Environmental Effects Propagate Among and Within Functional Groups?, Marie-Joëlle Rochet, Jeremy Collie, and Verena M. Trenkel
Traces: Plankton on the move, Cynthia Beth Rubin, Susanne Menden-Deuer, Elizabeth Harvey, and Jerry Fishenden
Traces: Plankton on the move, Cynthia Beth Rubin, Susanne Menden-Deuer, Elizabeth Harvey, and Jerry Fishenden
Association of phosphate with rhyolite glass in marine Neogene tuffs from Patagonia, Argentina, Nora Rubinstein, Ana M. Fazio, Roberto A. Scasso, and Steven Carey
Conservation in the Context of Climate Change: Practical Guidelines for Land Protection at Local Scales, Kevin Ruddock, Peter V. August, Christopher Damon, Charles LaBash, Pamela Rubinoff, and Donald Robadue Jr.
Analysis of Energy Flow in US GLOBEC Ecosystems Using End-to-End Models, James J. Ruzicka, John H. Steele, Sarah K. Gaichas, Tosca Ballerini, Dian J. Gifford, Richard D. Brodeur, and Eileen E. Hofmann
Major contribution of diatom resting spores to vertical flux in the sub-polar North Atlantic, T. A. Rynearson, K. Richardson, R. S. Lampitt, M. E. Sieracki, A. J. Poulton, M. M. Lyngsgaard, and M. J. Perry
Using Hierarchical Bayes to Understand Movement, Health, and Survival in the Endangered North Atlantic Right Whale, Robert S. Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, and James S. Clark
Spatial and temporal variability in sedimentological and geochemical properties of sediments from an anoxic crater lake in West Africa: Implications for paleoenvironmental reconstructions, Timothy M. Shanahan, Nicholas McKay, Jonathan T. Overpeck, John A. Peck, Christopher Scholz, Clifford W. Heil, and John King
Age models for long lacustrine sediment records using multiple dating approaches - An example from Lake Bosumtwi, Ghana, Timothy M. Shanahan, John A. Peck, Nicholas McKay, Clifford W. Heil, John King, Steven L. Forman, Dirk L. Hoffmann, David A. Richards, Jonathan T. Overpeck, and Christopher Scholz
Effects of chronic bottom fishing on the benthic epifauna and diets of demersal fishes on northern georges bank, Brian E. Smith, Jeremy S. Collie, and Nicole L. Lengyel
On the structure of the Lofoten Basin Eddy, H. Søiland and T. Rossby
Broad Salinity Tolerance as a Refuge from Predation in the Harmful Raphidophyte Alga Heterosigma akashiwo (Raphidophyceae), Suzanne L. Strom, Elizabeth L. Harvey, Kerri A. Fredrickson, and Susanne Menden-Deuer
Impact of Breaking Wave Form Drag on Near-Surface Turbulence and Drag Coefficient over Young Seas at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel
Processing of Underway CTD Data, D. S. Ullman and David Hebert
Changes in the source of nutrients associated with oceanographic dynamics offshore southern Chile (41°S) over the last 25,000years, Thomas J. Verleye, Philippe Martinez, Rebecca S. Robinson, and Stephen Louwye
Four Current Meter Models Compared in Strong Currents in Drake Passage, D. Randolph Watts, Maureen A. Kennelly, Kathleen A. Donohue, Karen L. Tracey, Teresa K. Chereskin, Robert A. Weller, and Ivan Victoria
Unresolved complex mixture (UCM) in coastal environments is derived from fossil sources, Helen K. White, Li Xu, Paul Hartmann, James G. Quinn, and Christopher M. Reddy
Impact of a warm ocean Eddy's circulation on hurricane-induced sea surface cooling with implications for hurricane intensity, Richard M. Yablonsky and Isaac Ginis
Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann
Manuscripts from 2012
Identifying Reference Genes with Stable Expression from High Throughput Sequence Data, Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, and Sonya T. Dyhrman
Azimuthal anisotropy of Lg attenuation in eastern Tibetan Plateau, Xueyang Bao, Eric Sandvol, Yongshun John Chen, James Ni, Thomas Hearn, and Yang Shen
Continued Exploration of the Santorini Volcanic Field and Cretan Basin, Aegean Sea, Katherine L. C. Bell, Paraskevi Nomikou, Steven N. Carey, Eleni Stathopoulou, Paraskevi Polymenakou, Athanasios Godelitsas, Chris Roman, and Michelle Parks
Changes in the biomass of chambo in the southeast arm of Lake Malawi: A stock assessment of Oreochromis spp., Richard J. Bell, Jeremy S. Collie, Daniel Jamu, and Moses Banda
Manufacturing origin of perfluorooctanoate (PFOA) in Atlantic and Canadian Arctic seawater, Jonathan P. Benskin, Lutz Ahrens, Derek C.G. Muir, Brian F. Scott, Christine Spencer, Bruno Rosenberg, Gregg Tomy, Henrik Kylin, Rainer Lohmann, and Jonathan W. Martin
Perfluoroalkyl acids in the atlantic and Canadian arctic oceans, Jonathan P. Benskin, Derek C.G. Muir, Brian F. Scott, Christine Spencer, Amila O. De Silva, Henrik Kylin, Jonathan W. Martin, Adam Morris, Rainer Lohmann, Gregg Tomy, Bruno Rosenberg, Sachi Taniyasu, and Nobuyoshi Yamashita
Evidence of Bottom-Trapped Currents in the Kuroshio Extension Region, Stuart P. Bishop, D. Randolph Watts, Jae-Hun Park, and Nelson G. Hogg