Publications from the faculty and research scientists of the Graduate School of Oceanography.
Submissions from 2013
Conservation in the Context of Climate Change: Practical Guidelines for Land Protection at Local Scales, Kevin Ruddock, Peter V. August, Christopher Damon, Charles LaBash, Pamela Rubinoff, and Donald Robadue Jr.
Analysis of Energy Flow in US GLOBEC Ecosystems Using End-to-End Models, James J. Ruzicka, John H. Steele, Sarah K. Gaichas, Tosca Ballerini, Dian J. Gifford, Richard D. Brodeur, and Eileen E. Hofmann
Using Hierarchical Bayes to Understand Movement, Health, and Survival in the Endangered North Atlantic Right Whale, Robert S. Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, and James S. Clark
Effects of chronic bottom fishing on the benthic epifauna and diets of demersal fishes on northern georges bank, Brian E. Smith, Jeremy S. Collie, and Nicole L. Lengyel
Impact of Breaking Wave Form Drag on Near-Surface Turbulence and Drag Coefficient over Young Seas at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel
Processing of Underway CTD Data, D. S. Ullman and David Hebert
Four Current Meter Models Compared in Strong Currents in Drake Passage, D. Randolph Watts, Maureen A. Kennelly, Kathleen A. Donohue, Karen L. Tracey, Teresa K. Chereskin, Robert A. Weller, and Ivan Victoria
Impact of a warm ocean Eddy's circulation on hurricane-induced sea surface cooling with implications for hurricane intensity, Richard M. Yablonsky and Isaac Ginis
Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann
Manuscripts from 2012
Identifying Reference Genes with Stable Expression from High Throughput Sequence Data, Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, and Sonya T. Dyhrman
Continued Exploration of the Santorini Volcanic Field and Cretan Basin, Aegean Sea, Katherine L. C. Bell, Paraskevi Nomikou, Steven N. Carey, Eleni Stathopoulou, Paraskevi Polymenakou, Athanasios Godelitsas, Chris Roman, and Michelle Parks
Changes in the biomass of chambo in the southeast arm of Lake Malawi: A stock assessment of Oreochromis spp., Richard J. Bell, Jeremy S. Collie, Daniel Jamu, and Moses Banda
Evidence of Bottom-Trapped Currents in the Kuroshio Extension Region, Stuart P. Bishop, D. Randolph Watts, Jae-Hun Park, and Nelson G. Hogg
Coastal Exploration of the Southern Black Sea Off Ereğli and Sinop, Turkey, Michael L. Brennan, Dan Davis, Chris Roman, Ilya V. Buynevich, Alexis Catsambis, Meko Kofahl, Maureen Merrigan, Suna Tuzun, Muhammet Duman, Derya Urkmez, J. Ian Vaughn, and Tufan Turanli
Submarine Volcanism in the Straits of Sicily, Steven N. Carey, Katherine L. C. Bell, Michael Marani, Mauro Rosi, Edward T. Baker, Chris Roman, Marco Pistolesi, and Joshua Kelly
Airborne lidar detection and characterization of internal waves in a shallow fjord, James H. Churnside, Richard D. Marchbanks, Jennifer H. Lee, Joseph A. Shaw, Alan Weidmann, and Percy L. Donaghay
Krill feeding on sediment in the Gulf of Maine (North Atlantic), Alison C. Cleary, Edward G. Durbin, and Tatiana A. Rynearson
A fisheries risk-assessment framework to evaluate trade-offs among management options in the presence of time-varying productivity, Jeremy S. Collie, Randall M. Peterman, and Brett M. Zuehlke
A Quantitative Comparison between 1D and 3D Source Inversion Methodologies: Application to the Middle East, Brian M. Covellone and Brian K. Savage
Vibrio parahaemolyticus in Rhode Island Coastal Ponds and the Estuarine Environment of Narragansett Bay, Annie M. Cox and Marta Gomez-Chiarri
Fracture of a ridged multi-year Arctic sea ice floe, J. P. Dempsey, Y. Xie, R. M. Adamson, and D. M. Farmer
Introduction to special section on Recent Advances in the Study of Optical Variability in the Near‐Surface and Upper Ocean, T. Dickey, David Farmer, and et al
Copepod feeding and digestion rates using prey DNA and qPCR, Edward G. Durbin, Maria C. Casas, and Tatiana A. Rynearson
Influence of Volatile Degassing on Initial Flow Structure and Entrainment During Undersea Volcanic Fire Fountaining Eruptions, P. D. Friedman, Steven Carey, and M. Raessi
Validation of Shear‐Wave Velocity Models of the Pacific Northwest, Haiying Gao and Yang Shen
Recent Arctic Climate Change and Its Remote Forcing of Northwest Atlantic Shelf Ecosystems, Charles H. Greene, Bruce C. Monger, Louise P. McGarry, Matthew D. Connelly, Neesha R. Schnepf, Andrew J. Pershing, Igor M. Belkin, Paula S. Ftratantoni, David G. Mountain, Robert S. Pickart, Rubao Ji, James J. Bisagni, Changsheng Chen, Sirpa M. A. Hakkinen, Dale B. Haidvogel, Jia Wang, Erica Head, Peter Smith, and Alessandra Conversi
Predator-Induced Fleeing Behaviors in Phytoplankton: A New Mechanism for Harmful Algal Bloom Formation?, Elizabeth L. Harvey and Susanne Menden-Deuer
Dominant eukaryotic export production during ocean anoxic events reflects the importance of recycled NH4+, Meytal B. Higgins, Rebecca S. Robinson, Jonathan M. Husson, Susan J. Carter, and Ann Pearson
A pipeline for structured light bathymetric mapping, Gabrielle Inglis, Clara Smart, Ian Vaughn, and Chris Roman
Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment, Jens Kallmeyer, Robert Pockalny, Rishi Ram Adhikari, David C. Smith, and Steven D'Hondt
Concurrent activity of anammox and denitrifying bacteria in the Black Sea, John B. Kirkpatrick, Clara A. Fuchsman, Evgeniy Yakushev, James T. Staley, and James W. Murray
Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment, Bente Aa Lomstein, Alice T. Langerhuus, Steven D'Hondt, Bo B. Jørgensen, and Arthur J. Spivack
Mantle dynamics beneath the Pacific Northwest and the generation of voluminous back‐arc volcanism, Maureen D. Long, Christy B. Till, Kelsey A. Drunken, Richard W. Carlson, Lara S. Wagner, Matthew J. Fouch, David E. James, Timothy L. Grove, Nicholas Schmerr, and Christopher R. Kincaid
The Metabolic Response of Pteropods to Acidification Reflects Natural CO2-Exposure in Oxygen Minimum Zones, A. E. Maas, K. F. Wishner, and B. A. Seibel
Near 13 day barotropic ocean response to the atmospheric forcing in the North Pacific, Hanna Na, Jae Hun Park, D. Randolph Watts, Kathleen A. Donohue, and Ho Jin Lee
Submarine volcanoes of the Kolumbo volcanic zone NE of Santorini Caldera, Greece, P. Nomikou, S. Carey, D. Papanikolaou, K. Croff Bell, D. Sakellariou, M. Alexandri, and K. Bejelou
A serpentinite-hosted ecosystem in the Southern Mariana Forearc, Yashuiko Ohara, Mark K. Reagan, Katsunori Fujikura, Hiromi Watanabe, Katsuyoshi Michibayahi, Teruaki Ishii, Robert J. Stern, Ignacio Pujana, Fernando Martinez, Guillaume Girard, Julia Ribeiro, Maryjo Brounce, Naoaki Komori, and Masashi Kino
Comparisons of sea surface height variability observed by pressure-recording inverted echo sounders and satellite altimetry in the Kuroshio Extension, Jae Hun Park, D. R. Watts, Kathleen A. Donohue, and Karen L. Tracey
A review of nitrogen isotopic alteration in marine sediments, Rebecca S. Robinson, Markus Kienast, Ana Luiza Albuquerque, Mark Altabet, Sergio Contreras, Ricardo De Pol Holz, Nathalie Dubois, Roger Francois, Eric Galbraith, Ting-Chang Hsu, Tara Ivanochko, Samuel Jaccard, Shuh-Ji Kao, Thorsten Kiefer, Stephanie Kienkast, Moritz Lehmann, Philippe Martinez, Matthew McCarthy, Jürgen Möbius, Tom Pedersen, Tracey M. Quan, Evgeniya Ryabenko, Andreas Schmittner, Ralph Schneider, Aya Schneider-Mor, Masahito Shigemitsu, Dan Sinclair, Christopher Somes, Anja Studer, Robert Thunell, and Jin-Yu Yang
The Development of High-Resolution Seafloor Mapping Techniques, Chris Roman, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, Bertrand Douillard, and Stefan Williams
Aerosol effects on microstructure and intensity of tropical cyclones, Daniel Rosenfeld, William L. Woodley, Alexander Khain, William R. Cotton, Gustavo Carrió, Isaac Ginis, and Joseph H. Golden
Aerobic microbial respiration in 86-million-year-old deep-sea red clay, Hans Røy, Jens Kallmeyer, Rishi Ram Adhikari, Robert Pockalny, Bo Barker Jørgensen, and Steven D'Hondt
Shelf‐basin exchange times of Arctic surface waters estimated from 228TH/228Ra disequilibrium, M. Rutgers van der Loeff, P. Cai, I. Stimac, D. Bauch, C. Hanfland, T. Roeske, and S. Bradley Moran
Tsunami triggering mechanisms associated with the 17th cent. BC Minoan eruption of thera Volcano, Greece, Dimitris Sakellariou, Grigoris Rousakis, Paraskevi Nomikou, Kathy Croff Bell, Steve Carey, and Haraldur Sigurdsson
Changing polar environments: Interdisciplinary challenges, Paul B. Shepson, Parisa A. Ariya, Clara J. Deal, D. James Donaldson, Thomas A. Douglas, Brice Loose, Ted Maksym, Patricia A. Matrai, Lynn M. Russell, Benjamin Saenz, Jacqueline Stefels, and Nadja Steiner
Erratum: Changing polar environments: Interdisciplinary challenges (Eos 93:11 (117-118) DOI: 10.1029/2012EO110001), Paul B. Shepson, Parisa A. Ariya, Clara J. Deal, D. James Donaldson, Thomas A. Douglas, Brice Loose, Ted Maksym, Patricia A. Matrai, Lynn M. Russell, Benjamin Saenz, Jacqueline Stefels, and Nadja Steiner
An Adaptive Framework for Selecting Environmental Monitoring Protocols to Support Ocean Renewable Energy Development, Emily J. Shumchenia, Sarah L. Smith, Jennifer McCann, Michelle Carnevale, Grover Fugate, Robert D. Kenney, John W. King, Peter W. C. Paton, Malia Schwartz, Malcolm Spaulding, and Kritopher J. Winiarski
Propagation of Kuroshio Extension Meanders between 143° and 149°E, Karen L. Tracey, D. Randolph Watts, Kathleen A. Donohue, and Hiroshi Ichikawa
Molecular Subdivision of the Marine Diatom Thalassiosira rotula in Relation to Geographic Distribution, Genome Size, and Physiology, Kerry A. Whittaker, Dayna R. Rignanese, Robert J. Olson, and Tatiana A. Rynearson
Geochemistry of basalts from IODP site U1365: Implications for magmatism and mantle source signatures of the mid-Cretaceous Osbourn Trough, Guoliang Zhang, Christopher Smith-Duque, Suohan Tang, He Li, Carlos Zarikian, Steven D'Hondt, and Fumio Inagaki
Three-dimensional anisotropic seismic wave modelling in spherical coordinates by a collocated-grid finite-difference method, Wei Zhang, Yang Shen, and Li Zhao
Manuscripts from 2011
Pacific Atmospheric Sulfur Experiment (PASE): dynamics and chemistry of the south Pacific tropical trade wind regime, Alan Bandy, Ian C. Faloona, Byron W. Blomquist, Barry J. Huebert, Antony D. Clarke, Steven G. Howell, R. L. Mauldin, Christopher A. Cantrell, James G. Hudson, Brian G. Heikes, John T. Merrill, Yuhang Wang, Daniel W. O'Sullivan, Wolfgang Nadler, and Douglas D. Davis
High resolution regional seismic attenuation tomography in eastern Tibetan Plateau and adjacent regions, Xueyang Bao, Eric Sandvol, James Ni, Thomas Hearn, Yongshun John Chen, and Yang Shen
An International Quiet Ocean Experiment, Ian L. Boyd, George Frisk, Ed Urban, Peter Tyack, Jesse Ausubel, Sophie Seeyave, Doug Cato, Brandon Southall, Michael Weise, Rex Andrew, Tomonari Akamatsu, René Dekeling, Christine Erbe, David Farmer, Roger Gentry, Tom Gross, Anthony Hawkins, Fenghua Li, Kathy Metcalf, James H. Miller, David Moretti, Cristian Rodrigo, and Tomio Shinke
Maritime History of ANZAC Cove, Michael L. Brennan, Dwight Coleman, Christopher N. Roman, Tufan Turanli, Dan Davis, Alexis Catsambis, James Moore, Maureen Merrigan, Brennan Bajdek, Daniel Whitesell, and Robert Ballard
Landscape Imaging of the Southeast Aegean Sea, Michael L. Brennan, Tufan Turanli, Bridget Buxton, Katherine L. Croff Bell, Christopher N. Roman, Meko Kofahl, Orkan Koyagasioglu, Daniel Whitesell, Thomas Chamberlain, Richard Sullivan, and Robert Ballard
Exploration of the Kolumbo Volcanic Rift Zone, Steven Carey, Katherine L. Croff Bell, Paraskevi Nomikou, Georges Vougioukalakis, Christopher N. Roman, Kathleen Cantner, Konstantina Bejelou, Maria Bourbouli, and Julie Fero Martin
Volcaniclastic processes and deposits in the deep-sea, Steven N. Carey and Jean Luc Schneider
Improvements to the methods used to measure bubble attenuation using an underwater acoustical resonator, Helen Czerski, Svein Vagle, David M. Farmer, and Nick Hall-Patch
Detailed Comparisons of Airborne Formaldehyde Measurements with Box Models during the 2006 INTEX-B and MILAGRO Campaigns: Potential Evidence for Significant Impacts of Unmeasured and Multi-Generation Volatile Organic Carbon Compounds, A. Fried, B. G. Heikes, and et al
Experimental Tropical Cyclone Prediction Using the GFDL 25-km-Resolution Global Atmospheric Model, Jeffrey S. Gall, Isaac Ginis, Shian-Jiann Lin, Timothy P. Marchok, and Jan-Huey Chen
Heterotrophic organisms dominate nitrogen fixation in the south pacific gyre, Hannah Halm, Phyllis Lam, Timothy G. Ferdelman, Gaute Lavik, Thorsten Dittmar, Julie Laroche, Steven D’Hondt, and Marcel M.M. Kuypers
Northeast US precipitation variability and North American climate teleconnections interpreted from late Holocene varved sediments, J. Bradford Hubeny, John W. King, and Mike Reddin
Detection of Diffuse Sea Floor Venting Using Structured Light Imaging, Gabrielle Inglis, Clara Smart, Christopher Roman, and Steven Carey
Development of High Resolution Sea Floor Mapping Tools and Techniques, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, and Christopher N. Roman
Biodiversity and Ecosystem Function in the Gulf of Maine: Pattern and Role of Zooplankton and Pelagic Nekton, Catherine L. Johnson, Jeffrey A. Runge, K. Alexandra Curtis, Edward G. Durbin, Jonathan A. Hare, Lewis S. Incze, Jason S. Link, Gary D. Melvin, Todd D. O'Brien, and Lou Van Guelpen
Instabilities in an Internal Solitary-like Wave on the Oregon Shelf, Levin G. Lamb and David M. Farmer
Tidal Effects on Intermediate Waters: A Case Study in the East/Japan Sea, Ho Jin Lee, Jae-Hun Park, Mark Wimbush, Kyung Tae Jung, Chan Joo Jang, Yang-Ki Cho, Young-Kyo Seo, and Jong Ho Nam
Crustal and mantle velocity models of southern Tibet from finite frequency tomography, Xiaofeng Liang, Yang Shen, Yongshun John Chen, and Yong Ren
The generation and evolution of nonlinear internal waves in the deep basin of the South China Sea, Qiang Li and David M. Farmer
Planktonic Microbes in the Gulf of Maine Area, William K.W. Li, Robert A. Andersen, Dian J. Gifford, Lewis S. Incze, Jennifer L. Martin, Cynthia H. Pilskaln, Juliette N. Rooney-Varga, Michael E. Sieracki, William H. Wilson, and Nicholas H. Wolff
Evidence for aggregation and export of cyanobacteria and nano-eukaryotes from the Sargasso Sea euphotic zone, M. W. Lomas and S. Bradley Moran
Inferred growth of juvenile French grunts, Haemulon flavolineatum, and schoolmaster, Lutjanus apodus, in mangrove and seagrass habitats, Ivan Mateo, Edward Durbin, Richard Appeldoorn, Aaron Adams, Francis Juanes, and Daisy Durant
Sustained Monitoring of the Southern Ocean at Drake Passage: Past Achievements and Future Priorities, Michael P. Meredith, Philip L. Woodworth, Teresa K. Chereskin, David P. Marshall, Lesley C. Allison, Grant R. Bigg, Kathleen A. Donohue, Karen J. Heywood, Chris W. Hughes, Angela Hibbert, Andrew McC. Hogg, Helen L. Johnson, Loic Jullion, Brian A. King, Harry Leach, Yueng-Djern Lenn, Miguel A. Morales Maqueda, David R. Munday, Alberto C. Naveira Garabato, Christine Provost, Jean-Baptiste Sallée, and Janet Sprintall
Does selective fishing conserve community biodiversity? Predictions from a length-based multispecies model, Marie Joëlle Rochet, Jeremy S. Collie, Simon Jennings, and Stephen J. Hall
Concept Tests for a New Wire Flying Vehicle Designed to Achieve High Horizontal Resolution Profiling in Deep Water, Chris Roman and Dave Hebert
Lagrangian floats as sea floor imaging platforms, Chris Roman, Gabrielle Inglis, and Bryan McGilvray
Development of High-Resolution Underwater Mapping Techniques, Christopher N. Roman, Gabrielle Inglis, J. Ian Vaughn, Stefan Williams, Oscar Pizarro, Ariell Friedman, and Daniel Steinberg
Sensing the ocean, Thomas B. Sanford, Kathryn A. Kelly, and David M. Farmer
Exploration of the Anaximander Mud Volcanoes, Timothy M. Shank, Santiago Herrera, Walter Cho, Christopher N. Roman, and Katherine L. Croff Bell
Remote Analysis of Grain Size Characteristic in Submarine Pyroclastic Deposits from Kolumbo Volcano, Greece, Clara Smart, D. P. Whitesell, Christopher N. Roman, and Steven Carey
Comparing species and ecosystem-based estimates of fisheries yields, John H. Steele, Dian J. Gifford, and Jeremy S. Collie
Mapping Shallow Coastal Ecosystems: A Case Study of a Rhode Island Lagoon, Mark Stolt, Michael Bradley, Jim Turenne, Maggie Payne, Eric Scherer, Giancarlo Cicchetti, Emily Shumchenia, Marisa Guarinello, John W. King, Jon Boothroyd, Bryan Oakley, Carol Thornber, and Pete August
On the Geostrophic Adjustment of an Isolated Lens: Dependence on Burger Number and Initial Geometry, Grant A. Stuart, Miles A. Sundermeyer, and Dave Hebert
Turbulent Airflow at Young Sea States with Frequent Wave Breaking Events: Large-Eddy Simulation, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323), Laura M. Wehrmann, Nils Risgaard-Petersen, Heather N. Schrum, Emily A. Walsh, Youngsook Huh, Minoru Ikehara, Catherine Pierre, Steven D'Hondt, Timothy G. Ferdelman, Ana Christina Ravelo, Kozo Takahashi, and Carlos Alvarez Zarikian
Simulating the time-dependent diffusion coefficient in mixed-pore-size materials, Zhigang Zhang, David L. Johnson, and Lawrence M. Schwartz
Manuscripts from 2010
A Regional Scale Modeling Analysis of Aerosol and Trace Gas Distributions over the Eastern Pacific During the INTEX-B Field Campaign, B. Adhikary, B. G. Heikes, and et al
Climate Variability, Oceanography, Bowhead Whale Distribution, and Iñupiat Subsistence Whaling near Barrow, Alaska, Carin J. Ashjian, Stephen R. Braund, Robert Campbell, J. C. "Craig" George, Jack Kruse, Wieslaw Maslowski, Sue E. Moore, Craig R. Nicolson, Stephen R. Okkonen, Barry F. Sherr, Evelyn B. Sherr, and Yvette H. Spitz
Transformation of an Agulhas eddy near the continental slope, S. Baker-Yeboah, G. R. Flieri, Georgi G. Sutyrin, and Y. Zhang
Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis, Derik Barseghian, Ilkay Altintas, Matthew B. Jones, Daniel Crawl, Nathan Potter, James Gallagher, Peter Cornillon, Mark Schildhauer, Elizabeth T. Borer, Eric W. Seabloom, and Parviez R. Hosseini
Gas bubbles as oceanographic tracers, Burkard Baschek and David M. Farmer
Identification and determination of trinitrotoluenes and their degradation products using liquid chromatography-electrospray ionization mass spectrometry, Jitka Bečanová, Zdeněk Friedl, and Zdeněk Šimek
Robotic tools for deep water archaeology: Surveying an ancient shipwreck with an autonomous underwater vehicle, Brian Bingham, Brendan Foley, Hanumant Singh, Richard Camilli, Katerina Delaporta, Ryan Eustice, Angelos Mallios, David Mindell, Christopher Roman, and Dimitris Sakellariou
Preliminary and novel estimates of CO2 gas transfer using a satellite scatterometer during the 2001GasEx experiment, Darek Bogucki, Mary Elena Carr, William M. Drennan, Peter Woiceshyn, Tetsu Hara, and Marjorie Schmeltz
Short- and Medium-Range Prediction of Tropical and Transitioning Cyclone Tracks within the NCEP Global Ensemble Forecasting System, Christian E. Buckingham, Timothy Marchok, Isaac Ginis, Lewis M. Rothstein, and Dail Rowe
Toward linking ocean models to fish population dynamics, Lawrence J. Buckley and Lauren B. Buckley
The past, present, and future of the AVHRR pathfinder SST program, Kenneth S. Casey, Tess B. Brandon, Peter Cornillon, and Robert Evans
Mapping Circulation in the Kuroshio Extension with an Array of Current and Pressure Recording Inverted Echo Sounders, Kathleen A. Donohue, D. Randolph Watts, Karen L. Tracey, Andrew D. Greene, and Maureen A. Kennelly