Explore scholarly publications from the Graduate School of Oceanography faculty at the University of Rhode Island.

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Manuscripts from 2019

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Growth and molting characteristics of Jonah crab (Cancer borealis) in Rhode Island Sound, Corinne L. Truesdale, M. Conor McManus, and Jeremy S. Collie

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Potassium isotope systematics of oceanic basalts, Brenna Tuller-Ross, Bernard Marty, Heng Chen, Katherine A. Kelley, Heather Lee, and Kun Wang

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Assessing the Multiple Impacts of Extreme Hurricanes in Southern New England, USA, David S. Ullman, Isaac Ginis, Wenrui Huang, Catherine Nowakowski, Xuanyu Chen, and Peter Stempel

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Archaea dominate oxic subseafloor communities over multimillion-year time scales, Aurèle Vuillemin, Scott D. Wankel, Ömer K. Coskun, Tobias Magritsch, Sergio Vargas, Emily R. Estes, Arthur J. Spivack, David C. Smith, Robert Pockalny, Richard W. Murray, Steven D'Hondt, and William D. Orsi

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A Global 3‐D Ocean Model for PCBs: Benchmark Compounds for Understanding the Impacts of Global Change on Neutral Persistent Organic Pollutants, Charlotte C. Wagner, Helen N. Amos, Colin P. Thackray, Yanxu Zhang, Elizabeth W. Lundgren, Gael Forget, Carey L. Friedman, Noelle E. Selin, Rainer Lohmann, and Elise M. Sunderland

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Virtual Reality and Oceanography: Overview, Applications, and Perspective, Noah L. Walcutt, Benjamin Knörlein, Tom Sgouros, Ivona Cetinić, and Melissa M. Omand

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Wind-wave misalignment effects on Langmuir turbulence in tropical cyclones conditions, Dong Wang, Tobias Kukulka, Brandon G. Reichl, Tetsu Hara, and Isaac Ginis

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Locating Shallow Seismic Sources With Waves Scattered by Surface Topography: Validation of the Method at the Nevada Test Site, Nian Wang, Yang Shen, Xueyang Bao, and Ashton Flinders

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Developing Consequence Thresholds for Storm Models Through Participatory Processes: Case Study of Westerly Rhode Island, Robert Witkop, Austin Becker, Peter Stempel, and Isaac Ginis

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Long-Term Variations in the Pixel-to-Pixel Variability of NOAA AVHRR SST Fields from 1982 to 2015, Fan Wu, Peter C. Cornillon, Lei Guan, and Katherine Kilpatrick

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Warm-Temperate food chains of the southeast shelf ecosystem, James A. Yoder

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Poly- and Perfluoroalkyl Substances in Seawater and Plankton from the Northwestern Atlantic Margin, Xianming Zhang, Rainer Lohmann, and Elsie M. Sunderland

Manuscripts from 2018

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PCBs and organochlorine pesticides in indoor environments - A comparison of indoor contamination in Canada and Czech Republic, Ondrej Audy, Lisa Melymuk, Marta Venier, Simon Vojta, Jitka Becanova, Kevin Romanak, Martina Vykoukalova, Roman Prokes, Petr Kukucka, Miriam L. Diamond, and Jana Klanova

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Full-Waveform Sensitivity Kernels of Component-Differential Traveltimes and ZH Amplitude Ratios for Velocity and Density Tomography, Xueyang Bao and Yang Shen

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Wave Attenuation and Gas Exchange Velocity in Marginal Sea Ice Zone, A. Bigdeli, T. Hara, B. Loose, and A. T. Nguyen

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Peridotites and basalts reveal broad congruence between two independent records of mantle fO2 despite local redox heterogeneity, Suzanne K. Birner, Elizabeth Cottrell, Jessica M. Warren, Katherine A. Kelley, and Fred A. Davis

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Atlantic Water Transformation Along Its Poleward Pathway Across the Nordic Seas, Anthony Bosse, Ilker Fer, Henrik Søiland, and Thomas Rossby

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Determining the AMSR-E SST Footprint from Co-located MODIS SSTs, Brahim Boussidi, Peter Cornillon, Gavino Puggioni, and Chelle Gentemann

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Carbon and Nitrogen Isoscapes in West Antarctica Reflect Oceanographic Transitions, Emily K. Brault, Paul L. Koch, Kelton W. McMahon, Kyle H. Broach, Aaron P. Rosenfield, Wilson Sauthoff, Valerie J. Loeb, Kevin R. Arrigo, and Walker O. Smith Jr.

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Retention performance of three widely used SPE sorbents for the extraction of perfluoroalkyl substances from seawater, Miroslav Brumovský, Jitka Bečanová, Pavlína Karásková, and Luca Nizzetto

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Isotopic Constraints on Nitrogen Transformation Rates in the Deep Sedimentary Marine Biosphere, C. Buchwald, K. Homola, A. J. Spivack, E. R. Estes, R. W. Murray, and S. D. Wankel

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Sensitivity of Offshore Tropical Cyclone Wave Simulations to Spatial Resolution in Wave Models, Xuanyu Chen, Isaac Ginis, and Tetsu Hara

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Rapid coastal deoxygenation due to ocean circulation shift in the northwest Atlantic, Mariona Claret, Eric D. Galbraith, Jaime B. Palter, Daniele Bianchi, Katja Fennel, Denis Gilbert, and John P. Dunne

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Feeding by antarctic krill euphausia superba in the west antarctic peninsula: Differences between fjords and open waters, Alison C. Cleary, Edward G. Durbin, and Maria C. Casas

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Bottom trawl fishing footprints on the world’s continental shelves, Jeremy Collie and et al

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Gulf Stream rings may rival atmospheric iron supply to the North Atlantic subtropical gyre, Tim M. Conway, Jaime B. Palter, and Gregory F. de Souza

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A Mössbauer-based XANES calibration for hydrous basalt glasses reveals radiation-induced oxidation of Fe, Elizabeth Cottrell, Antonio Lanzirotti, Bjorn Mysen, Suzanne Birner, Katherine A. Kelley, Roman Botcharnikov, Fred A. Davis, and Matthew Newville

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Field‐testing polyethylene passive samplers for the detection of neutral polyfluorinated alkyl substances in air and water, Erik Dixon-Anderson and Rainer Lohmann

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Radiolytic H2 Production in Martian Environments, Mary Dzaugis, Arthur J. Spivack, and Steven D’Hondt

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Upper Mantle Earth Structure in Africa From Full-Wave Ambient Noise Tomography, E. L. Emry, Yang Shen, A. A. Nyblade, A. Flinders, and X. Bao

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Seismic evidence for significant melt beneath the Long Valley Caldera, California, USA, Ashton F. Flinders, David R. Shelly, Philip B. Dawson, David P. Hill, Barbara Tripoli, and Yang Shen

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Phenology and time series trends of the dominant seasonal phytoplankton bloom across global scales, Kevin D. Friedland, Colleen B. Mouw, Rebecca G. Asch, Ana Sofia Ferreira, Stephanie Henson, Kimberly J. W. Hyde, Ryan E. Morse, Andrew C. Thomas, and Damian C. Brady

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Distribution of fine-grained tephra from the 1650 CE submarine eruption of Kolumbo volcano, Greece, Sarah Fuller, Steven Carey, and Paraskevi Nomikou

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On the characteristics of linear-phase roll vortices under a moving hurricane boundary layer, Kun Gao and Isaac Ginis

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Characterizing CDOM Spectral Variability Across Diverse Regions and Spectral Ranges, Brice K. Grunert, Colleen B. Mouw, and Audrey B. Ciochetto

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In-situ mechanical weakness of subducting sediments beneath a plate boundary décollement in the Nankai Trough, Yohei Hamada, Takehiro Hirose, Akira Ijiri, Yasuhiro Yamada, Yoshinori Sanada, Saneatsu Saito, Noriaki Sakurai, Takamitsu Sugihara, Takahiro Yokoyama, Tomokazu Saruhashi, Tatsuhiko Hoshino, Nana Kamiya, Stephen Bowden, Margaret Cramm, Susann Henkel, Kira Homola, Hiroyuki Imachi, Masanori Kaneko, Lorenzo Lagostina, Hayley Manners, Harry Luke McClelland, Kyle Metcalfe, Natsumi Okutsu, Donald Pan, Maija Jocelyn Raudsepp, Justine Sauvage, Florence Schubotz, Arthur Spivack, Satoshi Tonai, Tina Treude, Man Yin Tsang, Bernhard Viehweger, David T. Wang, Emily Whitaker, Yuzuru Yamamoto, and Kiho Yang

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An Ion-Neutral Model to Investigate Chemical Ionization Mass Spectrometry Analysis of Atmospheric Molecules – Application to a Mixed Reagent Ion System for Hydroperoxides and Organic Acids, Brian G. Heikes, Victoria Treadaway, Ashley S. McNeill, Indira K. C. Silwal, and Daniel W. O'Sullivan

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Chapter 10 - Outlook for Using Stable Isotopes in Animal Migration Studies, Keith A. Hobson, Leonard I. Wassenaar, Gabriel J. Bowen, Alexandre Courtiol, Clive N. Trueman, Christian C. Voigt, Jason B. West, Kelton W. McMahon, and Seth D. Newsome

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Ekman and eddy exchange of freshwater and oxygen across the Labrador Shelf break, Tara Howatt, Jaime B. Palter, John Brian Robin Matthews, Brad deYoung, Ralf Bachmayer, and Brian Claus

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GROWTH CHARACTERISTICS OF NEWLY ISOLATED INDONESIAN MICROALGAE UNDER DIFFERENT SALINITY, Wa Iba, Michael A. Rice, Lucie Maranda, and Gary H. Wikfors

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Advancing the use of passive sampling in risk assessment and management of contaminated sediments: Results of an international passive sampling inter-laboratory comparison, Michael T. O. Jonker, Stephan A. van der Heijden, Dave Adelman, Jennifer N. Apell, Robert M. Burgess, Yongju Choi, Loretta A. Fernandez, Geanna M. Flavetta, Upal Ghosh, Philip M. Gschwend, Sarah E. Hale, Mehregan Jalalizadeh, Mohammed Khairy, Mark A. Lampi, Wenjian Lao, Rainer Lohmann, Michael J. Lydy, Keith A. Maruya, Samuel A. Nutile, Amy M. P. Oen, Magdalena I. Rakowska, Danny Reible, Tatsiana P. Rusina, Foppe Smedes, and Yanwen Wu

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Organophosphate Flame Retardants in the Indoor and Outdoor Dust and Gas-Phase of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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Selected Organohalogenated Flame Retardants in Egyptian Indoor and Outdoor Environments: Levels, Sources and Implications for Human Exposure, Mohammed A. Khairy and Rainer Lohmann

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A high-resolution, 60 kyr record of the relative geomagnetic field intensity from Lake Towuti, Indonesia, Kartika Hajar Kirana, Satria Bijaksana, John King, Gerald Hendrik Tamuntuan, James Russell, La Ode Ngkoimani, Darharta Dahrin, and Silvia Jannatul Fajar

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Segmentation of Slow Slip Events in South Central Alaska Possibly Controlled by a Subducted Oceanic Plateau, Haotian Li, Meng Wei, Duo Li, Yajing Liu, Young Hee Kim, and Shiyong Zhou

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Three‐Dimensional Passive‐Source Reverse‐Time Migration of Converted Waves: The Method, Jiahang Li, Yang Shen, and Wei Zhang

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Polychlorinated biphenyls in the global ocean, Rainer Lohmann and Jordi Dachs

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Evidence of an Active Volcanic Heat Source beneath the Pine Island Glacier, Brice Loose, Alberto C. Naveira Garabato, Peter Schlosser, William J. Jenkins, David Vaughan, and Karen J. Heywood

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Time trends and trophic transfer of polybrominated diphenylethers (PBDEs) in Antarctic biota, Erin Markham, Emily K. Brault, Mohammed Khairy, Anna Robuck, Michael E. Goebel, Mark G. Cantwell, Rebecca M. Dickhut, and Rainer Lohmann

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Time Trends of Polybrominated Diphenyl Ethers (PBDEs) in Antarctic Biota, Erin Markham, Emily K. Brault, Mohammed Khairy, Anna R. Robuck, Michael E. Goebel, Mark G. Cantwell, Rebecca M. Dickhut, and Rainer Lohmann

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Diffuse Extension of the Southern Mariana Margin, Fernando Martinez, Robert J. Stern, Katherine A. Kelley, Yashuhiko Ohara, Jonathan D. Sleeper, Julia M. Ribeiro, and Maryjo Brounce

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Concentrations and Water Mass Transport of Legacy POPs in the Arctic Ocean, Yuxin Ma; Dave A. Adelman; Eduard Bauerfeind; Ana Cabrerizo; Carrie A. McDonough; Derek Muir; Thomas Soltwedel; Caoxin Sun; Charlotte C, Wagner; Elsie M. Sunderland; and Rainer Lohmann

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Dissolved Organophosphate Esters and Polybrominated Diphenyl Ethers in Remote Marine Environments: Arctic Surface Water Distributions and Net Transport Through Fram Strait, Carrie A. McDonough, Amila O. De Silva, Caoxin Sun, Ana Cabrerizo, David Adelman, Thomas Soltwedel, Eduard Bauerfeind, Derek C. G. Muir, and Rainer Lohmann

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Chapter 7 - Amino Acid Isotope Analysis: A New Frontier in Studies of Animal Migration and Foraging Ecology. A New Frontier in Studies of Animal Migration and Foraging Ecology., Kelton W. McMahon and Seth D. Newsome

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Calibrating amino acid δ13C and δ15N offsets between polyp and protein skeleton to develop proteinaceous deep-sea corals as paleoceanographic archives., Kelton W. McMahon, Branwen Williams, Thomas P. Guilderson, Danielle S. Glynn, and Matthew D. McCarthy

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Tracking shifts in Atlantic mackerel (Scomber scombrus) larval habitat suitability on the Northeast U.S. Continental Shelf, M. Conor McManus, Jonathan A. Hare, David E. Richardson, and Jeremy S. Collie

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Herbivorous Protist Growth and Grazing Rates at In Situ and Artificially Elevated Temperatures during an Arctic Phytoplankton Spring Bloom, Susanne Menden-Deuer, Caitlyn Lawrence, and Guyantonia Franze

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The Theory of Games and Microbe Ecology, Susanne Menden-Deuer and Julie Rowlett

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Seasonal similarity in rates of protistan herbivory in fjords along the Western Antarctic Peninsula, F. Morison and S. Menden-Deuer

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Meeting Mentoring Needs in Physical Oceanography: An Evaluation of the Impact of MPOWIR, Colleen B. Mouw, Sarah Clem, Sonya Legg, and Jean Stockard

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Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems, Frank E. Muller-Karger, Colleen B. Mouw, and et al

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Quantification of gas phase hydrogen peroxide and methyl peroxide in ambient air: Using atmospheric pressure chemical ionization mass spectrometry with O2, and O2(CO2) reagent ions, Danie W. O'Sullivan, Indira K.C. Silwal, Ashley S. McNeill, Victoria Treadaway, and Brian G. Heikes

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Climate, Ocean Circulation, and Sea Level Changes under Stabilization and Overshoot Pathways to 1.5 K Warming, Jaime B. Palter, Thomas L. Frölicher, David Paynter, and Jasmin G. John

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Climate, ocean circulation, and sea level changes under stabilization and overshoot pathways to 1.5 K warming, Jaime B. Palter, Thomas L. Frölicher, David Paynter, and Jasmin G. John

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The Sensitivity of Future Ocean Oxygen to Changes in Ocean Circulation, Jaime B. Palter and David S. Trossman

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Surface currents from hourly variations of suspended particulate matter from Geostationary Ocean Color Imager data, Kyung-Ae Park, Min-Sun Lee, Ji-Eun Park, David Ullman, Peter C. Cornillon, and Young-Je Park

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Minimal Influence of Extracellular DNA on Molecular Surveys of Marine Sedimentary Communities, Gustavo A. Ramírez, Steffen L. Jørgensen, Rui Zhao, and Steven D’Hondt

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Influence of Commercial DNA Extraction Kit Choice on Prokaryotic Community Metrics in Marine Sediment, Gustavo Ramirez, Dennis Graham, and Steven D’Hondt

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A New Biological Proxy for Deep-Sea Paleo-Oxygen: Pores of Epifaunal Benthic Foraminifera, Anthony E. Rathburn, Jake Willingham, Wiebke Ziebis, Ashley M. Burkett, and Bruce H. Corliss

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A Direct Estimate of Volume, Heat, and Freshwater Exchange Across the Greenland-Iceland-Faroe-Scotland Ridge, T. Rossby, C. Flagg, Leon Chafik, Ben Harden, and Henrik Søiland

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Concentrations, Trends, and Air–Water Exchange of PCBs and Organochlorine Pesticides Derived from Passive Samplers in Lake Superior in 2011, Zoe Ruge, Derek Muir, Paul Helm, and Rainer Lohmann

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Petrogenesis of alkalic seamounts on the Galápagos Platform, Darin M. Schwartz, V. Dorsey Wanless, Rebecca Berg, Max P. Jones, Daniel J. Fornari, S. Adam Soule, Marion L. Lytle, and Steve Carey

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Response of benthic fauna to experimental bottom fishing: A global meta-analysis, Marija Sciberras, Jan Geert Hiddink, Simon Jennings, Claire L. Szostek, Kathryn M. Hughes, Brian Kneafsey, Leo J. Clarke, Nick Ellis, Adriaan D. Rijnsdorp, Robert A. McConnaughey, Ray Hilborn, Jeremy Collie, C. Roland Pitcher, Ricardo O. Amoroso, Ana M. Parma, Petri Suuronen, and Michel J. Kaiser

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New to total primary production ratio (f-ratio) in the Bay of Bengal using isotopic composition of suspended particulate organic carbon and nitrogen, C. K. Sherin, V. V.S.S. Sarma, G. D. Rao, R. Viswanadham, M. M. Omand, and V. S.N. S.N. Murty

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Real-Time Chronological Hazard Impact Modeling, Peter Stempel, Isaac Ginis, David S. Ullman, Austin Becker, and Robert Witkop

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Hydrological modeling of storm runoff and snowmelt in taunton river basin by applications of HEC-HMS and PRMS models, Fei Teng, Wenrui Huang, and Isaac Ginis

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Measurement of Formic Acid, Acetic Acid and Hydroxyacetaldehyde, Hydrogen Peroxide, and Methyl Peroxide in Air by Chemical Ionization Mass Spectrometry: Airborne Method, Victoria Treadaway, Brian G. Heike, Ashley S. McNeill, Indira K. C. Silwal, and Daniel W. O'Sullivan

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Methane-Oxidizing Seawater Microbial Communities from an Arctic Shelf, C. Uhlig, J. B. Kirkpatrick, Steven L. D'Hondt, and Brice Loose

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Interaction of Langmuir turbulence and inertial currents in the ocean surface boundary layer under tropical cyclones, Dong Wang, Tobias Kukulka, Brandon G. Reichl, Tetsu Hara, Isaac Ginis, and Peter P. Sullivan

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Concentrations of Multiple Phytoplankton Pigments in the Global Oceans Obtained from Satellite Ocean Color Measurements with MERIS, Guoqing Wang, Zhongping Lee, and Colleen B. Mouw

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Seismic behavior on oceanic transform faults at the east pacific rise, Meng Wei

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Numerical Modeling of Dynamically Triggered Shallow Slow Slip Events in New Zealand by the 2016 Mw 7.8 Kaikoura Earthquake, Meng Wei, Yoshihiro Kaneko, Pengcheng Shi, and Yajing Liu

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Amino acid isotope discrimination factors for a carnivore: physiological insights from leopard sharks and their diet, John P. Whiteman, Sora L. Kim, Kelton W. McMahon, Paul L. Koch, and Seth D. Newsome

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Impact of skeletal heterogeneity and treatment method on interpretation of environmental variability from the proteinaceous skeletons of deep-sea gorgonian octocorals, Branwen Williams, Kelton McMahon, Sarah Barnes, Devyn Parks, Ella Kim, Tanja Srebotnjak, and Peter Etnoyer

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Interplay of crystal fractionation, sulfide saturation and oxygen fugacity on the iron isotope composition of arc lavas: An example from the Marianas, H. M. Williams, J. Prytulak, J. D. Woodhead, K. A. Kelley, M. Brounce, and T. Plank

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Ocean Deoxygenation and Zooplankton: Very Small Oxygen Differences Matter, Karen F. Wishner, Brad A. Seibel, Christopher Roman, C. Deutsch, Dawn Outram, C. T. Shaw, M. A. Birk, K. A. S. Mislan, T. J. Adams, D. Moore, and S. Riley

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Roles of the Ocean Mesoscale in the Horizontal Supply of Mass, Heat, Carbon, and Nutrients to the Northern Hemisphere Subtropical Gyres, Ayako Yamamoto, Jaime B. Palter, Carolina O. Dufour, Stephen M. Griffies, Daniele Bianchi, Mariona Claret, John P. Dunne, Ivy Frenger, and Eric D. Galbraith

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Corrigendum to “Determination of Fe3+/ΣFe of XANES basaltic glass standards by Mössbauer spectroscopy and its application to the oxidation state of iron in MORB” [Volume 479, 20 February 2018, pages 166-175](S0009254118300123)(10.1016/j.chemgeo.2018.01.006), Hongluo L. Zhang, Elizabeth Cottrell, Peat A. Solheid, Katherine A. Kelley, and Marc M. Hirschmann

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Determination of Fe3+/ΣFe of XANES basaltic glass standards by Mössbauer spectroscopy and its application to the oxidation state of iron in MORB, Hongluo L. Zhang, Elizabeth Cottrell, Peat A. Solheid, Katherine A. Kelley, and Marc M. Hirschmann

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Land-Use-Based Sources and Trends of Dissolved pPBDEs and PAHs in an Urbanized Watershed Using Assive Polyethylene Samplers, Wenlu Zhao, Minggang Cai, Dave Adelman, Mohammed Khairy, Pete August, and Rainer Lohmann

Manuscripts from 2017

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Nonbreaking wave‐induced mixing in upper ocean during tropical cyclones using coupled hurricane‐ocean‐wave modeling, S. Aijaz, M. Ghantous, A V. Babanin, Isaac Ginis, B. Thomas, and G. Wake

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Growth, Grazing, and Starvation Survival in Three Heterotrophic Dinoflagellate Species, Sean R. Anderson and Susanne Menden-Deuer

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Higher measured than modeled ozone production at increased NOx levels in the Colorado Front Range, Bianca C. Baier, William H. Brune, David O. Miller, Donald Blake, Russell Long, Armin Wisthaler, Christopher Cantrell, Alan Fried, Brian G. Heikes, Steve Brown, Erin McDuffie, Frank Flocke, Eric Apel, Lisa Kaser, and Andrew Weinheimer

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Changes in the size structure of marine fish communities, Richard J. Bell, Jeremy Collie, Trevor A. Branch, Michael J. Fogarty, Coilin Minto, and Daniel Ricard

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Numerical investigation of the Arctic ice–ocean boundary layer and implications for air–sea gas fluxes, Arash Bigdeli, Brice Loose, An T. Nguyen, and Sylvia T. Cole

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Forearc Peridotites from Tonga Record Heterogeneous Oxidation of the Mantle following Subduction Initiation, Suzanne K. Birner, Jessica M. Warren, Elizabeth Cottrell, Fred A. Davis, Katherine A. Kelley, and Trevor J. Falloon

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Impact of Langmuir Turbulence on Upper Ocean Response to Hurricane Edouard: Model and Observations, A. Blair, I. Ginis, T. Hara, and E. Ulhorn

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Obtaining Phytoplankton Diversity from Ocean Color: A Scientific Roadmap for Future Development, Astrid Bracher, Heather A. Bouman, Robert J.W. Brewin, Annick Bricaud, Vanda Brotas, Aurea M. Ciotti, Lesley Clementson, Emmanuel Devred, Annalisa Di Cicco, Stephanie Dutkiewicz, Nick J. Hardman-Mountford, Anna E. Hickman, Martin Hieronymi, Takafumi Hirata, Svetlana N. Losa, Colleen B. Mouw, Emanuele Organelli, Dionysios E. Raitsos, Julia Uitz, Meike Vogt, and Aleksandra Wolanin

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Contaminants of emerging concern in the open sea waters of the Western Mediterranean, Miroslav Brumovský, Jitka Bečanová, Jiří Kohoutek, Mireno Borghini, and Luca Nizzetto

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First Toba supereruption revival: Comment and Reply: REPLY, Chang-Hwa Chen, Meng-Yang Lee, Yoshiyuki Iizuka, Jonathan Dehn, Kuo-Yen Wei, and Steven Carey