Publications from the faculty and research scientists of the Graduate School of Oceanography.
Manuscripts from 2010
Asphalt volcanoes as a potential source of methane to late Pleistocene coastal waters, David L. Valentine, Christopher M. Reddy, Christopher Farwell, Tessa M. Hill, Oscar Pizarro, Dana R. Yoerger, Richard Camilli, Robert K. Nelson, Emily E. Peacock, Sarah C. Bagby, Brian A. Clarke, Christopher N. Roman, and Morgan Soloway
Wavenumber Spectrum in the Gulf Stream from Shipboard ADCP Observations and Comparison with Altimetry Measurements, Dong-Ping Wang, Charles N. Flagg, Kathleen A. Donohue, and Hans Thomas Rossby
Modeling the impact of declining sea ice on the Arctic marine planktonic ecosystem, Jinlun Zhang, Yvette H. Spitz, Michael Steele, Carin Ashjian, Robert Campbell, Léo Berline, and Patricia Matrai
Unsplit complex frequency-shifted PML implementation using auxiliary differential equations for seismic wave modeling, Wei Zhang and Yang Shen
Dust Storms Come to Central and Southwestern China, Too: Implications from a Major Dust Event in Chongqing, Q. Zhao, K. He, K. A. Rahn, Y. Ma, Y. Jia, F. Yang, F. Duan, Y. Lei, G. Chen, Y. Cheng, H. Liu, and S. Wang
Manuscripts from 2009
A regional scale modeling analysis of aerosol and trace gas distributions over the eastern Pacific during the INTEX-B field campaign, D. Adhikary, Brian G. Heikes, and et al
Manifestation of the Pacific Decadal Oscillation in the Kuroshio, Magdalena Andres, Jae-Hun Park, Mark Wimbush, Xiao-Hua Zhu, Hirohiko Nakamura, Kuh Kim, and Kyung-Il Chang
Coastal Lagoons and Climate Change: Ecological and Social Ramifications in the U.S. Atlantic and Gulf Coast Ecosystems, Abigail Anthony, Joshua Atwood, Peter V. August, Carrie Byron, J. Stanley Cobb, Cheryl Foster, Crystal Fry, Arthur Gold, Kifle Hagos, Leanna Heffner, D. Q. Kellogg, Kimberly Lellis-Dibble, James J. Opaluch, Candace A. Oviatt, Anna Pfeiffer-Herbert, Nicole Rohr, Leslie Smith, Tiffany Smythe, Judith Swift, and Nathan Vinhateiro
Measurements of Sea Surface Height Variability in the Eastern South Atlantic from Pressure Sensor–Equipped Inverted Echo Sounders: Baroclinic and Barotropic Components, Sheekela Baker-Yeboah, D. Randolph Watts, and Deirdre A. Byrne
Serving GODAE Data and Products to the Ocean Community, Jon D. Blower, Frederique Blanc, Mike Clancy, Peter C. Cornillon, Craig Donlon, Peter Hacker, Keith Haines, Steve C. Hankin, Thomas Loubrie, Sylvie Pouliquen, Martin Price, Timothy F. Pugh, and Ashwanth Srinivasan
Vertical structure of bottom Ekman tidal flows: Observations, theory, and modeling from the northern Adriatic, J. W. Book, P. J. Martin, I. Janeković, M. Kuzmić, and Mark Wimbush
US GODAE: Global Ocean Prediction with the HYbrid Coordinate Ocean Model (HYCOM), Eric P. Chassignet, Harley E. Hurlburt, E. Joseph Metzger, Ole Martin Smedstad, James A. Cummings, George R. Halliwell, Rainer Bleck, Remy Baraille, Alan J. Wallcraft, Carlos Lozano, Hendrik L. Tolman, Ashwanth Srinivasan, Steven Hankin, Peter C. Cornillon, Robert Weisberg, Alexander Barth, Ruoying He, Francisco Werner, and John Wilkin
Subseafloor Sedimentary Life in the South Pacific Gyre, Steven D'Hondt, Arthur J. Spivack, Robert Pockalny, Timothy G. Ferdelman, Jan P. Fischer, Jens Kallmeyer, Lewis J. Abrams, David C. Smith, Dennis Graham, Franciszek Hasiuk, Heather Schrum, and Andrea M. Stancin
Hydrometeor‐enhanced tephra sedimentation: Constraints from the 18 May 1980 eruption of Mount St. Helens, A. J. Durant, W. I. Rose, A. M. Sarna-Wojcicki, Steven Carey, and A. C. M. Volentik
The Effect of Wind–Wave–Current Interaction on Air–Sea Momentum Fluxes and Ocean Response in Tropical Cyclones, Yalin Fan, Isaac Ginis, and Tetsu Hara
Numerical Simulations and Observations of Surface Wave Fields under an Extreme Tropical Cyclone, Yalin Fan, Isaac Ginis, Tetsu Hara, C. Wayne Wright, and Edward J. Walsh
Oxygen penetration deep into the sediment of the South Pacific gyre, J. P. Fischer, T. G. Ferdelman, Steven D'Hondt, H. Røy, and F. Wenzhöfer
The 2005 Chios Ancient Shipwreck Survey: New Methods for Underwater Archaeology, Brendan P. Foley, Katerina Dellaporta, Dimitris Sakellariou, Brian S. Bingham, Richard Camilli, Ryan M. Eustice, Dionysis Evagelistis, Vicki Lynn Ferrini, Kostas Katsaros, Dimitris Kourkoumelis, Aggelos Mallios, Paraskevi Micha, David A. Mindell, Christopher Roman, Hanumant Singh, David S. Switzer, and Theotokis Theodoulou
Applications of Satellite-Derived Ocean Measurements to Tropical Cyclone Intensity Forecasting, Gustavo Goni, Mark DeMaria, John Knaff, Charles Sampson, Isaac Ginis, Francis Bringas, Alberto Mavume, Chris Lauer, I.-I. Lin, M. M. Ali, Paul Sandery, Silvana Ramos-Buarque, KiRyong Kang, Avichal Mehra, Eric Chassignet, and George Halliwell
Turbulent supply of nutrients to phytoplankton at the New England shelf break front, Burke Hales, Dave Hebert, and John Marra
Terrain Constrained Stereo Correspondence, Gabrielle Inglis and Chris Roman
Effects of Open Marsh Water Management on Numbers of Larval Salt Marsh Mosquitoes, Mary-Jane James-Pirri, Howard S. Ginsberg, R. Michael Erwin, and Janith Taylor
The Kuroshio Extension and its recirculation gyres, Steven R. Jayne, Nelson G. Hogg, Stephanie N. Waterman, Luc Rainville, Kathleen A. Donohue, D. Randolph Watts, Karen L. Tracey, Julie L. McClean, Mathew E. Maltrud, Bo Qiu, Shuiming Chen, and Peter Hacker
Toward extraplanetary under-ice exploration: Robotic steps in the arctic, Clayton Kunz, Chris Murphy, Hanumant Singh, Claire Pontbriand, Robert A. Sohn, Sandipa Singh, Taichi Sato, Chris Roman, Ko Ichi Nakamura, Michael Jakuba, Ryan Eustice, Richard Camilli, and John Bailey
Airborne Measurement of OH Reactivity During INTEX-B, J. Mao, X. Ren, W. H. Brune, J. R. Olson, J. H. Crawford, A. Fried, L. G. Huey, R. C. Cohen, B. G. Heikes, H. B. Singh, D. R. Blake, G. W. Sachse, G. S. Diskin, S. R. Hall, and R. E. Shetter
Eutrophication and the macroscope, Scott W. Nixon
Anthropogenic enhancement of Egypt's Mediterranean fishery, Autumn J. Oczkowski, Scott W. Nixon, Stephen L. Granger, Abdel-Fattah M. El-Sayed, and Richard A. McKinney
Intrusion of warm Bering/Chukchi waters onto the shelf in the western Beaufort Sea, Stephen R. Okkonen, Carin J. Ashjian, Robert G. Campbell, Wieslaw Maslowski, Jaclyn L. Clement-Kinney, and Rachel Potter
Airborne Observations of Total RONO2: New Constraints on the Yield and Lifetime of Isoprene Nitrates, A. E. Perring, T. H. Bertram, P. J. Wooldridge, A. Fried, B. G. Heikes, J. Dibb, J. D. Crounse, P. O. Wennberg, N. J. Blake, D. R. Blake, W. H. Brune, H. B. Singh, and R. C. Cohen
Nitrogen isotopic evidence for deglacial changes in nutrient supply in the eastern equatorial Pacific, Rebecca S. Robinson, P. Martinez, L. D. Pena, and I. Cacho
Development of a New Lagrangian Float for Studying Coastal Marine Ecosystems, Alex Schwithal and Chris Roman
Manuscripts from 2008
Observations of Kuroshio flow variations in the East China Sea, Magdalena Andres, Mark Wimbush, J.-H. Park, K.-I. Chang, B.-H. Lim, D. Randolph Watts, H. Ichikawa, and W. J. Teague
Changes in a benthic megafaunal community due to disturbance from bottom fishing and the establishment of a fishery closure, Rebecca G. Asch and Jeremy S. Collie
Age model and core‐seismic integration for the Cenozoic Arctic Coring Expedition sediments from the Lomonosov Ridge, Jan Backman, Martin Jakobsson, Martin Frank, Francesca Sangiorgi, Henk Brinkhuis, Catherine Stickley, Matthew O'Regan, Reidar Løvlie, Heiko Pälike, David Spofforth, Jérôme Gattacecca, Kate Moran, John W. King, and Chip Heil
The Phaeodactylum genome reveals the evolutionary history of diatom genomes, Chris Bowler, Bethany D. Jenkins, Tatiana A. Rynearson, and et al
Byzantium Beneath the Black Sea, Bridget Buxton, Robert Ballard, Michael Brennan, Dwight Coleman, Katy Croff, Christopher Roman, Dan Davis, Dennis Piechota, and Sergiy Voronov
Variable Morphologic Expression of Volcanic, Tectonic, and Hydrothermal Processes at Six Hydrothermal Vent Fields in the Lau Back-Arc Basin, Vicki Lynn Ferrini, Margaret K. Tivey, Suzanne M. Carbotte, Fernando Martinez, and Chris Roman
Beryllium isotopes in central Arctic Ocean sediments over the past 12.3 million years: Stratigraphic and paleoclimatic implications, Martin Frank, Jan Backman, Martin Jakobsson, Kate Moran, Matthew O'Regan, John W. King, Brian A. Haley, Peter W. Kubik, and Dieter Garbe-Schönberg
Role of convection in redistributing formaldehyde to the upper troposphere over North America and the North Atlantic during the summer 2004 INTEX campaign, Alan Fried, Haiwei Shen, and et al
Formaldehyde over North America and the North Atlantic during the summer 2004 INTEX campaign: Methods, observed distributions, and measurement‐model comparisons, Alan Fried, James G. Walega, Jennifer R. Olson, Jim H. Crawford, Gao Chen, Petter Weibring, Dirk Richter, Chad Roller, Frank K. Tittel, Brian G. Heikes, Julie A. Snow, Haiwei Shen, Daniel W. O'Sullivan, Michael Porter, Henry Fuelberg, Jeremy Halland, and Dylan B. Millet
Polychlorinated biphenyls in air and water of the North Atlantic and Arctic Ocean, Rosalinda Gioia, Rainer Lohmann, Jordi Dachs, Christian Temme, Soenke Lakaschus, Stlef Schulz-Bull, Ines Hand, and Kevin C. Jones
Long-baseline acoustic navigation for under-ice autonomous underwater vehicle operations, Michael V. Jakuba, Christopher N. Roman, Hanumant Singh, Christopher Murphy, Clayton Kunz, Claire Willis, Taichi Sato, and Robert A. Sohn
The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part II: Growing Seas, Tobias Kukulka and Tetsu Hara
The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part I: Mature Seas, Tobias Kukulka and Tetsu Hara
Deep Sea Underwater Robotic Exploration in the Ice-Covered Arctic Ocean With AUVs, Clayton Kunz, Chris Murphy, Richard Camilli, Hanumant Singh, John Bailey, Ryan M. Eustice, Chris Roman, Michael Jakuba, Claire Willis, Taichi Sato, Ko-ichi Nakamura, and Robert A. Sohn
Impact of the Reduced Drag Coefficient on Ocean Wave Modeling under Hurricane Conditions, Il-Ju Moon, Isaac Ginis, and Tetsu Hara
HOx chemistry during INTEX‐A 2004: Observation, model calculation, and comparison with previous studies, Xinrong Ren, Jennifer R. Olson, James H. Crawford, William H. Brune, Jingqiu Mao, Robert B. Long, Zhong Chen, Gao Chen, Melody A. Avery, Glen W. Sachse, John D. Barrick, Glenn S. Diskin, L. Greg Huey, Alan Fried, Ronald C. Cohen, Brian Heikes, Paul O. Wennberg, Hanwant B. Singh, Donald R. Blake, and Richard E. Shetter
Component-Dependent Fréchet Sensitivity Kernels and Utility of Three-Component Seismic Records, Yang Shen, Zhigang Zhang, and Li Zhao
Integrable motion of a vortex dipole in an axisymmetric flow, G. G. Suyrin, X. Perrot, and X. Carton
A comparison between warm-water fish assemblages of Narragansett Bay and those of Long Island Sound waters, Abby Jane M. Wood, Jeremy S. Collie, and Jonathan A. Hare
Improving the Ocean Initialization of Coupled Hurricane–Ocean Models Using Feature-Based Data Assimilation, Richard M. Yablonsky and Isaac Ginis
Mitochondrial cob and cox1 Genes and Editing of the Corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with Special Reference to the Phylogenetic Position of the Genus Dinophysis, Huan Zhang, Debashish Bhattacharya, Lucie Maranda, and Senjie Lin
Comment on “Current system east of the Ryukyu Islands” by A. Nagano et al., Xiao-Hua Zhu, Jae-Hun Park, Mark Wimbush, and Cheng-Hao Yang
Manuscripts from 2007
The Operational GFDL Coupled Hurricane–Ocean Prediction System and a Summary of Its Performance, Morris A. Bender, Isaac Ginis, Robert Tuleya, Biju Thomas, and Timothy Marchok
The colonial ascidian Didemnum sp. A: Current distribution, basic biology and potential threat to marine communities of the northeast and west coasts of North America, S. G. Bullard, G. Lambert, M. R. Carman, J. Byrnes, R. B. Whitlatch, G. Ruiz, R. J. Miller, L. Harris, P. C. Valentine, Jeremy S. Collie, J. Pederson, D. C. McNaught, A. N. Cohen, R. G. Asch, J. Dijkstra, and K. Heinonen
Reconstruction of contaminant trends in a salt wedge estuary with sediment cores dated using a multiple proxy approach, Mark G. Cantwell, John W. King, Robert M. Burgess, and Peter G. Appleby
Exploring Submarine Arc Volcanoes, Steven Carey and Haraldur Sigurdsson
Ecological consequences of early Late Pleistocene megadroughts in tropical Africa, Andrew S. Cohen, Jeffrey R. Stone, Kristina R. M. Beuning, Lisa E. Park, Peter N. Reinthal, David Dettman, Christopher A. Scholz, Thomas C. Johnson, John W. King, Michael R. Talbot, Erik T. Brown, and Sarah J. Ivory
Exploring Subseafloor Life with the Integrated Ocean Drilling Program, Steven D'Hondt, Fumio Inagaki, Timothy Ferdelman, Bo Barker Jørgensen, Kenji Kato, Paul Kemp, Patricia Sobecky, Mitchell Sogin, and Ken Takai
Rhizon Sampling of Pore Waters on Scientific Drilling Expeditions: An Example from the IODP Expedition 302, Arctic Coring Expedition (ACEX), Gerald R. Dickens, Martin Koelling, David C. Smith, and Luzie Schnieders
Validation of Aura Microwave Limb Sounder Ozone by ozonesonde and lidar measurements, Y. B. Jiang, J. Merrill, and et al
A Different Sort of Invader: The Second Manatee to Visit Rhode Island, Robert D. Kenney
Summertime influence of Asian pollution in the free troposphere over North America, Q. Liang, L. Jaeglé, R. C. Hudman, S. Turquety, D. J. Jacob, M. A. Avery, E. V. Browell, G. W. Sachse, D. R. Blake, W. Brune, X. Ren, R. C. Cohen, J. E. Dibb, A. Fried, H. Fuelberg, M. Porter, Brian G. Heikes, G. Huey, H. B. Singh, and P. O. Wennberg
Noise level correlates with manatee use of foraging habitats, Jennifer L. Miksis-Olds, Percy L. Donaghay, James H. Miller, Peter L. Tyack, and Jeffrey A. Nystuen
A Physics-Based Parameterization of Air–Sea Momentum Flux at High Wind Speeds and Its Impact on Hurricane Intensity Predictions, Il-Ju Moon, Isaac Ginis, Tetsu Hara, and Biju Thomas
Geochemical evidence for African dust inputs to soils of western Atlantic islands: Barbados, the Bahamas, and Florida, Daniel R. Muhs, James R. Budahn, Joseph M. Prospero, and Steven Carey
Nitrogen Inputs to Rhode Island Coastal Salt Ponds - Too Much of a Good Thing, Scott W. Nixon and Betty A. Buckley
Atmospheric mercury over the NE Pacific during spring 2002: Gradients, residence time, upper troposphere lower stratosphere loss, and long‐range transport, L. F. Radke, H. R. Friedli, and Brian G. Heikes
Rain in Shallow Cumulus Over the Ocean: The RICO Campaign, Robert M. Rauber, Brian G. Heikes, and et al
In the Driver's Seat: Rico and Education, Robert M. Rauber, Haiwei Shen, and et al
Seasonal Variability of the South Equatorial Current Bifurcation in the Atlantic Ocean: A Numerical Study, Regina R. Rodrigues, Lewis M. Rothstein, and Mark Wimbush
Design of a gas tight water sampler for AUV operations, Chris Roman and Richard Camilli
Preliminary model tests for the design of a gliding deep water elevator, Chris Roman, Todd Gregory, Eric Martin, Alex Sanguinetti, and Jenna Drummond
A trajectory‐based estimate of the tropospheric ozone column using the residual method, M. R. Schoeberl, J. Merrill, and et al
East African Megadroughts between 135 and 75 Thousand Years Ago and Bearing on Early-Modern Human Origins, Christopher A. Scholz, Thomas C. Johnson, Andrew S. Cohen, John W. King, John A. Peck, Johnathan T. Overpeck, Michael R. Talbot, Erik T. Brown, Leonard Kalindekafe, Philip Y.O. Amoako, Robert P. Lyons, Timothy M. Shanahan, Isla S. Castañeda, Clifford W. Heil, Steven L. Forman, Lanny R. McHargue, Kristina R. Beuning, Jeanette Gomez, and James Pierson
Trace determination of the flame retardant tetrabromobisphenol A in the atmosphere by gas chromatography–mass spectrometry, Zhiyong Xie, Ralf Ebinghaus, Rainer Lohmann, Olaf Heemken, Armando Caba, and Wilhelm Püttmann
Fundamental‐mode basin oscillations in the Japan/East Sea, Yongsheng Xu, D. Randolph Watts, Mark Wimbush, and Jae-Hun Park
Manuscripts from 2006
Biological formation of ethane and propane in the deep marine subsurface, Kai-Uwe Hinrichs, John M. Hayes, Wolfgang Bach, Arthur J. Spivack, Laura R. Hmelo, Nils G. Holm, Carl G. Johnson, and Sean P. Sylva
Biogeographical Distribution and Diversity of Microbes in Methane Hydrate-Bearing Deep Marine Sediments on the Pacific Ocean Margin, Fumio Inagaki, Takuro Nunoura, Satoshi Nakagawa, Andreas Teske, Mark Lever, Antje Lauer, Masae Suzuki, Ken Takai, Mark Delwiche, Frederick S. Colwell, Kenneth H. Nealson, Koki Horikoshi, Steven D'Hondt, and Bo B. Jørgensen
Multiplex Quantitative Real-Time Reverse Transcriptase PCR for F+-Specific RNA Coliphages: a Method for Use in Microbial Source Tracking, Merek Kirs and David C. Smith
Biological control of the vernal population increase of Calanus finmarchicus on Georges Bank, Xingwen Li, Dennis J. McGillicuddy Jr., Edward G. Durbin, and Peter H. Wiebe
Quantifying the importance of the atmospheric sink for polychlorinated dioxins and furans relative to other global loss processes, Rainer Lohmann, Elena Jurado, Jordi Dachs, Ulrike Lohmann, and Kevin C. Jones
Transmission loss in manatee habitats, Jennifer L. Miksis-Olds and James H. Miller
Formaldehyde distribution over North America: Implications for satellite retrievals of formaldehyde columns and isoprene emission, Dylan B. Millet, Daniel J. Jacob, Solène Turquety, Rynda C. Hudman, Shiliang Wu, Alan Fried, James Walega, Brian G. Heikes, Donald R. Blake, Hanwant B. Singh, Bruce E. Anderson, and Antony D. Clarke
Second‐mode internal tides in the East China Sea deduced from historical hydrocasts and a model, Jae-Hun Park, Magdalena Andres, Paul J. Martin, Mark Wimbush, and D. Randolph Watts
Internal Tides in the Southwestern Japan/East Sea, Jae-Hun Park and D. Randolph Watts
Rapid Variability in the Japan/East Sea: Basin Oscillations, Internal Tides, and Near-Inertial Oscillations, Jae-Hun Park, D. Randolph Watts, Mark Wimbush, Jeffrey W. Book, Karen L. Tracey, and Yongsheng Xu
Observations of the Subtropical Mode Water Evolution from the Kuroshio Extension System Study, Bo Qiu, Peter Hacker, Shuiming Chen, Kathleen A. Donohue, D. Randolph Watts, Nelson G. Hogg, and Steven R. Jayne
The 2005 Lake Malawi Scientific Drilling Project, Christopher A. Scholz, Andrew S. Cohen, Thomas C. Johnson, John W. King, and Kathryn Moran
Marine Investigations of Greece's Santorini Volcanic Field, Haraldur Sigurdsson, Steven Carey, Matina Alexandri, Georges Vougioukalakis, Katherine Croff, Chris Roman, Dimitris Sakellariou, Christos Anagnostou, Grigoris Rousakis, Chrysanti Ioakim, Aleka Goguo, Dionysis Ballas, Thanassis Misaridis, and Paraskevi Nomikou
The Sedimentary Environment Below Earth’s Polar Ice Cap as a Microbial Habitat, David C. Smith, Stephanie Forschner-Dancause, David C. Rowley, and Steven D'Hondt
Currents, Eddies, and a "Fish Story" in the Southwestern Japan/East Sea, D. Randolph Watts, Mark Wimbush, Karen L. Tracey, William J. Teague, Jae-Hun Park, Douglas A. Mitchell, Jong-Hwan Yoon, Moon-Sik Suk, and Kyung-Il Chang
Manuscripts from 2005
Ocean Data Assimilation and Initialization Procedure for the Coupled GFDL/URI Hurricane Prediction System, Aleksandr Falkovich, Isaac Ginis, and Stephen Lord
The ICDP Lake Bosumtwi Drilling Project: A First Report, Christian Koeberl, John Peck, John W. King, Bernd Milkereit, Jonathan Overpeck, and Christopher Scholz
The Dok Cold Eddy, D. A. Mitchell, W. J. Teague, M. Wimbush, D. R. Watts, and G. G. Sutyrin
A Multi-Index GEM Technique and Its Application to the Southwestern Japan/East Sea, Jae-Hun Park, D. Randolph Watts, Karen L. Tracey, and Douglas A. Mitchell
Observations of Steep Wave Statistics in Open Ocean Waters, Nicholas Scott, Tetsu Hara, Edward J. Walsh, and Paul A. Hwang
Manuscripts from 2004
Direct Observations of Along-Isopycnal Upwelling and Diapycnal Velocity at a Shelfbreak Front, John A. Barth, Dave Hebert, Andrew C. Dale, and David S. Ullman
From genes to ecosystems: the ocean's new frontier, Scott C. Doney, Mark R. Abbott, John J. Cullen, David M. Karl, and Lewis Rothstein
Sea Changes Ashore: The Ocean and Iceland's Herring Capital, Lawrence C. Hamilton, Steingrímur Jónsson, Helga Ögmundardóttir, and Igor M. Belkin