Publications from the faculty and research scientists of the Graduate School of Oceanography.

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Manuscripts from 2014

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Tropical Cyclone–Induced Thermocline Warming and Its Regional and Global Impacts, Michael R. Bueti, Isaac Ginis, Lewis M. Rothstein, and Stephen M. Griffies

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Three-Dimensional Double-Ridge Internal Tide Resonance in Luzon Strait, Maarten C. Buijsman, Jody M. Klymak, Sonya Legg, Matthew H. Alford, David Farmer, Jennifer A. MacKinnon, Jonathan D. Nash, Jae-Hun Park, Andy Pickering, and Harper Simmons

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Volatile Cycling of H2O, CO2, F, and Cl in the HIMU Mantle: A New Window Provided by Melt Inclusions from Oceanic Hot Spot Lavas at Mangaia, Cook Islands, Rita A. Cabral, Matthew G. Jackson, Kenneth T. Koga, Estelle F. Rose-Koga, Erik H. Hauri, Martin J. Whitehouse, Allison A. Price, James M.D. Day, Nobumichi Shimizu, and Katherine A. Kelley

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Integrated volcanologic and petrologic analysis of the 1650AD eruption of Kolumbo submarine volcano, Greece, Kathleen Cantner, Steven Carey, and Paraskevi Nomikou

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Magnetic properties of uncultivated magnetotactic bacteria and their contribution to a stratified estuary iron cycle, A. P. Chen, Veronica M. Berounsky, M. K. Chan, M. G. Blackford, C. Cady, B. M. Moskowitz, P. Kraal, E. A. Lima, R. E. Kopp, G. R. Lumpkin, B. P. Weiss, P. Hesse, and N. G. F. Vella

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Baroclinic Transport Time Series of the Antarctic Circumpolar Current Measured in Drake Passage, María Paz Chidichimo, Kathleen A. Donohue, D. Randolph Watts, and Karen L. Tracey

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Evolutionary potential of marine phytoplankton under ocean acidification, Sinéad Collins, Björn Rost, and Tatiana A. Rynearson

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Geoacoustic Inversion of Ship Radiated Noise in Shallow Water Using Data from a Single Hydrophone, Steven E. Crocker, Peter L. Nielsen, James H. Miller, and Martin Siderius

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The Underground Economy (Energetic Constraints of Subseafloor Life), Steven D'Hondt, Guizhi Wang, and Arthur J. Spivack

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Early reproduction by Calanus glacialis in the Northern Bering Sea: The role of ice algae as revealed by molecular analysis, Edward G. Durbin and Maria C. Casas

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Physical characteristics of tephra layers in the deep sea realm: The campanian ignimbrite eruption, S. L. Engwell, R. S.J. Sparks, and S. Carey

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Special issue of 16th PAMS Meeting: Recent advances in the oceanography of Pacific-Asian Marginal Seas, David Farmer, Sen Jan, Yu heng Tseng, Dongliang Yuan, and Sang Ho Lee

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Exploring New Drilling Prospects in the Southwest Pacific, S. J. Gallagher, N. Exon, M. Seton, M. Ikehara, C. J. Hollis, R. Arculus, Steven D'Hondt, C. Foster, M. Gurnis, J. P. Kennett, R. McKay, A. Malakoff, J. Mori, K. Takai, and L. Wallace

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Upper Mantle Structure of the Cascades from Full-Wave Ambient Noise Tomography: Evidence for 3D Mantle Upwelling in the Back-Arc, Haiying Gao and Yang Shen

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On the Generation of Roll Vortices Due to the Inflection Point Instability of the Hurricane Boundary Layer Flow, Kun Gao and Isaac Ginis

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Diurnal Variability of Persistent Organic Pollutants in the Atmosphere Over the Remote Southern Atlantic Ocean, Rosalinda Gioia, Matthew MacLeod, Javier Castro-Jiménez, Luca Nizzetto, Jordi Dachs, Rainer Lohmann, and Kevin C. Jones

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Large Eddy Simulation of Sediment Transport Over Rippled Beds, J. C. Harris and Stephan Grilli

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Active Pacific North America Plate boundary tectonics as evidenced by seismicity in the oceanic lithosphere offshore Baja California, Mexico, Egill Hauksson, Hiroo Kanamori, Joann Stock, Marie-Helene Cormier, and Mark Legg

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Investigating the Effects of Mobile Bottom Fishing on Benthic Biota: A Systematic Review Protocol, Kathryn M. Hughes, Michel J. Kaiser, Simon Jennings, Robert A. McConnaughey, Roland Pitcher, Ray Hilborn, Ricardo O. Amoroso, Jeremy Collie, Jan Geert Hiddink, Ana M. Parma, and Adriaan Rijnsdorp

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Reconstruction of Pacific Ocean Bottom Water Salinity During the Last Glacial Maximum, Tania Lado Insua, Arthur J. Spivack, Dennis Graham, Steven D'Hondt, and Kathryn Moran

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Revised estimates for the volume of the late bronze age minoan eruption, santorini, Greece, E. N. Johnston, R. S.J. Sparks, J. C. Phillips, and S. Carey

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The contribution of the Weddell Gyre to the lower limb of the Global Overturning Circulation, Loïc Jullion, Alberto C. Naveira Garabato, Sheldon Bacon, Michael P. Meredith, Pete J. Brown, Sinhue Torres-Valdés, Kevin G. Speer, Paul R. Holland, Jun Dong, Dorothée Bakker, Mario Hoppema, Brice Loose, Hugh J. Venables, William J. Jenkins, Marie-José Messias, and Eberhard Fahrbach

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Exploration of the 1891 Foerstner submarine vent site (Pantelleria, Italy): Insights into the formation of basaltic balloons, Joshua T. Kelly, Steven Carey, Marco Pistolesi, Mauro Rosi, Katherine Lynn Croff-Bell, Chris Roman, and Michael Marani

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The Distribution of the Mid-to-Lower Crustal Low-Velocity Zone Beneath the Northeastern Tibetan Plateau Revealed from Ambient Noise Tomography, Hongyi Li, Yang Shen, Zhongxian Huang, Xinfu Li, Meng Gong, Danian Shi, Eric Sandoval, and Aibeng Li

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Crustal Velocity Structure of the Northeastern Tibetan Plateau from Ambient Noise Surface-Wave Tomography and its Tectonic Implications, Xinfu Li, Hongyi Li, Yang Shen, Meng Gong, Danian Shi, Eric Sandvol, and Aibing Li

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Organic Pollutants and Ocean Fronts Across the Atlantic Ocean: A Review, Rainer Lohmann and Igor M. Belkin

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The Five Stable Noble Gases are Sensitive Unambiguous Tracers of Glacial Meltwater, B. Loose and W. J. Jenkins

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A Parameter Model of Gas Exchange for the Seasonal Sea Ice Zone, Brice Loose, W. R. McGillis, D. Perovich, C. J. Zappa, and P. Schlosser

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The Impact of Slab Dip Variations, Gaps and Rollback on Mantle Wedge Flow: Insights from Fluids Experiments, Julia G. MacDougall, Chris Kincaid, Sara Szwaja, and Karen M. Fischer

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Estimates of Micro-, Nano-, and Picoplankton Contributions to Particle Export in the Northeast Pacific, B. L. Mackinson, S. Bradley Moran, M. W. Lomas, G. M. Stewart, and R. P. Kelly

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Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem, Anna J. Malek, Jeremy S. Collie, and James Gartland

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Significance of Population Centers As Sources of Gaseous and Dissolved PAHs in the Lower Great Lakes, Carie A. McDonough, Mohammed A. Khairy, Derek C G Muir, and Rainer Lohmann

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Pacific freshening drives Pliocene cooling and Asian monsoon intensification, Junsheng Nie, Thomas Stevens, Yongui Song, John W. King, Rui Zhang, Shunchuan Ji, Lisha Gong, and Danielle Cares

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Tsunami hazard risk of a future volcanic eruption of Kolumbo submarine volcano, NE of Santorini Caldera, Greece, P. Nomikou, S. Carey, K. L.C. Bell, D. Papanikolaou, K. Bejelou, K. Cantner, D. Sakellariou, and I. Perros

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The detection of volcanic debris avalanches (VDAs) along the Hellenic volcanic arc, through marine geophysical techniques, P. Nomikou, D. Papanikolaou, A. Tibaldi, S. Carey, I. Livanos, K. L.C. Bell, F. A. Pasquarè, and G. Rousakis

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The emergence and growth of a submarine volcano: The Kameni islands, Santorini (Greece), P. Nomikou, M. M. Parks, D. Papanikolaou, D. M. Pyle, T. A. Mather, Steven Carey, A. B. Watts, M. Paulatto, M. L. Kalnins, I. Livanos, K. Bejelou, E. Simou, and I. Perros

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Post Eruption inflation of the East Pacific Rise at 9°50′ N, Scott L. Nooner, Spahr C. Webb, W. Roger Buck, and Marie-Helene Cormier

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Changing pH in the Surface Ocean, Michael E.Q. Pilson

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Black Carbon Concentrations and Sources in the Marine Boundary Layer of the Tropical Atlantic Ocean using Four Methodologies, K. Pohl, M. Cantwell, P. Herckes, and Rainer Lohmann

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Targeted search for actinomycetes from nearshore and deep-sea marine sediments, Alejandra Prieto-Davó, Luis J. Villarreal-Gómez, Stephanie Forschner-Dancause, Alan T. Bull, James E.M. Stach, David C. Smith, David C. Rowley, and Paul R. Jensen

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Sea State Dependence of the Wind Stress Over the Ocean Under Hurricane Winds, Brandon G. Reichl, Tetsu Hara, and Isaac Ginis

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On the long-term stability of Gulf Stream transport based on 20 years of direct measurements, T. Rossby, C. N. Flagg, K. Donohue, A. Sanchez-Franks, and J. Lillibridge

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First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins, Maxim Rubin-Blum, Gilad Antler, Rami Tsadok, Eli Shemesh, James A. Austin Jr., Dwight F. Coleman, Beverly N. Goodman-Tchernov, Zvi Ben-Avraham, and Dan Tchernov

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Glacial forcing of central Indonesian hydroclimate since 60,000 y B.P., James M. Russell, Hendrik Vogel, Bronwen L. Konecky, Satria Bijaksana, Yongsong Huang, Martin Melles, Nigel Wattrus, Kassandra Costa, and John W. King

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Determination of in situ dissolved inorganic carbon concentration and alkalinity for marine sedimentary porewater, Justine Sauvage, Arthur J. Spivack, Richard W. Murray, and Steven D'Hondt

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Fish trophic engineering: Ecological effects of the invasive ascidian Didemnum vexillum (Georges Bank, northwestern Atlantic), Brian E. Smith, Jeremy S. Collie, and Nicole L. Lengyel

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The Air-Sea Interface and Surface Stress Under Tropical Cyclones, Alexander V. Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, and Isaac Ginis

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Basaltic Volcaniclastics from the Challenger Deep Forearc Segment, Mariana Convergent Margin: Implications for Tectonics and Magmatism of the Southernmost Izu–Bonin–Mariana Arc, Robert J. Stern, Minghua Ren, Katherine A. Kelley, Yasuhiko Ohara, Fernando Martinez, and Sherman H. Bloomer

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Impact of Dominant Breaking Waves on Air–Sea Momentum Exchange and Boundary Layer Turbulence at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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Mercury bioaccumulation in cartilaginous fishes from Southern New England coastal waters: Contamination from a trophic ecology and human health perspective, David L. Taylor, Nicholas J. Kutil, Anna J. Malek, and Jeremy S. Collie

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An Anomalous Near-Bottom Cross-Shelf Intrusion of Slope Water on the Southern New England Continental Shelf, D. S. Ullman, D. L. Codiga, A. Pfeiffer-Herbert, and Christopher R. Kincaid

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The Mw 6.5 offshore Northern California earthquake of 10 January 2010: Ordinary stress drop on a high‐strength fault, Meng Wei and Jeffrey J. McGuire

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Mesoscale Convective System Surface Pressure Anomalies Responsible for Meteotsunamis Along the U.S. East Coast on June 13th, 2013, Christina A. Wertman, Richard M. Yablonsky, Yang Shen, John Merrill, Christopher R. Kincaid, and Robert A. Pockalny

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Below the Disappearing Marshes of an Urban Estuary: Historic Nitrogen Trends and Soil Structure, Cathleen Wigand, Charles T. Roman, Earl Davey, Mark Stolt, Roxanne Johnson, Alana Hanson, Elizabeth B. Watson, S. Bradley Moran, Donald R. Cahoon, James C. Lynch, and Patricia Rafferty

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A comparison of vessel-mounted acoustic doppler current profiler and satellite altimeter estimates of sea surface height and transports between New Jersey and Bermuda along the CMV Oleander route, Jessica S. Worst, Kathleen A. Donohue, and T. Rossby

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The great 2012 Arctic Ocean summer cyclone enhanced biological productivity on the shelves, Jinlun Zhang, Robert Campbell, Victoria Hill, Yvette H. Spitz, and Michael Steele

Manuscripts from 2013

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The Great Whirl: Observations of its seasonal development and interannual variability, L. M. Beal and K. A. Donohue

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Submarine evidence of a debris avalanche deposit on the eastern slope of Santorini volcano, Greece, Katherine Lynn Croff Bell, Steven N. Carey, Paraskevi Nomikou, Haraldur Sigurdsson, and Dimitris Sakellariou

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Divergent Eddy Heat Fluxes in the Kuroshio Extension at 144°–148°E. Part I: Mean Structure, Stuart P. Bishop, D. Randolph Watts, and Kathleen A. Donohue

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Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study, Philip W. Boyd, Tatiana A. Rynearson, Evelyn A. Armstrong, Feixue Fu, Kendra Hayashi, Zhangxi Hu, David A. Hutchins, Raphael M. Kudela, Elena Litchman, Margaret R. Mulholland, Uta Passow, Robert F. Strzepek, Kerry A. Whittaker, Elizabeth Yu, and Mridul K. Thomas

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The contribution of eddies to striations in absolute dynamic topography, C. E. Buckingham and Peter C. Cornillon

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Predation on Prerecruits Can Delay Rebuilding of Depleted Cod Stocks, Jeremy Collie, Cóilín Minto, Boris Worm, and Richard Bell

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Rebuilding fish communities: the ghost of fisheries past and the virtue of patience, Jeremy Collie, Marie-Joëlle Rochet, and Richard Bell

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Marine spatial planning in practice, Jeremy S. Collie, W. L. Vic Adamowicz, Michael W. Beck, Bethany Craig, Timothy E. Essington, David Fluharty, Jake Rice, and James N. Sanchirico

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Nature and extent of the deep biosphere, Frederick S. Colwell and Steven D'Hondt

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Redox heterogeneity in MORB as a function of mantle source, Elizabeth Cottrell and Katherine A. Kelley

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Evaluating the performance of a multispecies statistical catch-at-age model, Kiersten L. Curti, Jeremy S. Collie, Christopher M. Legault, and Jason S. Link

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Sulfur degassing at Erta Ale (Ethiopia) and Masaya (Nicaragua) volcanoes: Implications for degassing processes and oxygen fugacities of basaltic systems, J. M. de Moor, T. P. Fischer, Z. D. Sharp, P. L. King, M. Wilke, R. E. Botcharnikov, E. Cottrell, M. Zelenski, B. Marty, K. Klimm, C. Rivard, D. Ayalew, C. Ramirez, and Katherine A. Kelley

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Geochemistry: Subsurface sustenance, Steven D'Hondt

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IODP Expedition 329: Life and Habitability Beneath the Seafloor of the South Pacific Gyre, Steven D'Hondt, Fumio Inagaki, and Carlos Alvarez Zarikian

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Assessment and Use of NGR Instrumentation on the JOIDES Resolution to Quantify U, Th, and K Concentrations in Marine Sediment, Ann G. Dunlea, Richard W. Murray, Robert N. Harris, Maxim A. Vasiliev, Helen Evans, Arthur J. Spivack, and Steven D'Hondt

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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome, Bryndan P. Durham, Jana Grote, Kerry A. Whittaker, Sara J. Bender, Haiwei Luo, Sharon L. Grim, Julia M. Brown, John R. Casey, Anthony Dron, Lennin Florez-Leiva, Andreas Krupke, Catherine M. Luria, Aric H. Mine, Olivia D. Nigro, Santhiska Pather, Agathe Talarmin, Emma K. Wear, Thomas S. Weber, Jesse M. Wilson, Matthew J. Church, Edward F. DeLong, David M. Karl, Grieg F. Steward, John M. Eppley, Nikos C. Krypides, Stephan Schuster, and Michael S. Rappé

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Equatorial Pacific peak in biological production regulated by nutrient and upwelling during the late Pliocene/early Pleistocene cooling, J. Etourneau, Rebecca S. Robinson, P. Martinez, and R. Schneider

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Intrusive dike complexes, cumulate cores, and the extrusive growth of Hawaiian volcanoes, Ashton F. Flinders, Garrett Ito, Michael O. Garcia, John M. Sinton, Jim Kauahikaua, and Brian Taylor

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Comparing sediment equilibrium partitioning and passive sampling techniques to estimate benthic biota PCDD/F concentrations in Newark Bay, New Jersey (U.S.A.), Carey L. Friedman and Rainer Lohmann

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The mean composition of ocean ridge basalts, Allison Gale, Colleen A. Dalton, Charles H. Langmuir, Yongjun Su, and Jean-Guy Schilling

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Vibrio cholerae Exploits Sub-Lethal Concentrations of a Competitor-Produced Antibiotic to Avoid Toxic Interactions, Jason R. Graff, Stephanie Forschner-Dancause, Susanne Menden-Deuer, Richard A. Long, and David C. Rowley

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Swim Speed, Behavior, and Movement of North Atlantic Right Whales (Eubalaena glacialis) in Coastal Waters of Northeastern Florida, USA, James H.W. Hain, Joy D. Hampp, Shelia A. McKenney, Julie A. Albert, and Robert D. Kenney

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A low‐relief shield volcano origin for the South Kaua‘i Swell, Garrett Ito, Michael O. Garcia, John R. Smith, Brian Taylor, Ashton Flinders, Brian Jicha, Seiko Yamasaki, Dominique Weis, Lisa Swinnard, and Chuck Blay

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The 1815 Tambora ash fall: Implications for transport and deposition of distal ash on land and in the deep sea, Jessica Kandlbauer, Steven N. Carey, and R. Stephen J. Sparks

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Feasibility of using low density polyethylene sheets to detect atmospheric organochlorine pesticides in Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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Field Calibration of Low Density Polyethylene Passive Samplers for Gaseous POPs, Mohammed A. Khairy and Rainer Lohmann

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Source Apportionment and Risk Assessment of Polycyclic Aromatic Hydrocarbons in the Atmospheric Environment of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece, Stephanos P. Kilias, Paraskevi Nomikou, Dimitrios Pappanikolaou, Paraskevi N. Polymenakou, Athanasios Godelitsas, Ariadne Argyraki, Steven Carey, Platon Gamaletsos, Theo J. Mertzimekis, Elenie Stathopoulou, Joerg Goettlicher, Ralph Steininger, Konstantina Betzelou, Isidoros Livanos, Christos Christakis, Katherine Croff Bell, and Michael Scoullos

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Steady late quaternary slip rate on the Cinarcik section of the North Anatolian fault near Istanbul, Turkey, Hulya Kurt, C. C. Sorlien, L. Seeber, M. S. Steckler, D. J. Shillington, G. Cifci, Marie-Helene Cormier, J.-X. Dessa, O. Atgin, D. Dondurur, E. Demirbag, S. Okay, C. Imren, S. Gurcay, and H. Carton

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SCIMPI: A New Borehole Observatory, T. Lado-Insua, K. Moran, I. Kulin, S. Farrington, and J. B. Newman

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Vertical Eddy Diffusion as a Key Mechanism for Removing Perfluorooctanic Acid (PFOA) from the Global Surface Oceans, Rainer Lohmann, Elena Jurado, Henk A. Dijkstra, and Jordi Dachs

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Concentrations, Fluxes and Residence Time of PBDEs Across the Tropical Atlantic Ocean, Rainer Lohmann, Jana Klanova, Petr Kukucka, Shifra Yonis, and Kevyn Bollinger

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(Viewpoint): Science Should Guide TSCA Reform, Rainer Lohmann, Heather M. Stapleton, and Ronald A. Hites

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Fluid Interactions That Enable Stealth Predation by the Upstream-Foraging Hydromedusa Craspedacusta sowerbyi, K. Lucas, S. P. Colin, J. H. Costello, K. Katja, and E. Klos

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Climatic Variability of the Circulation in the Rhode Island Sound: A Modeling Study, Yiyong Luo, Lew Rothstein, Qianqian Liu, and Shuwen Zhang

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Water as a New Matrix for Global Assessment of Hydrophilic POPs, Derek Muir and Rainer Lohmann

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Morphological analysis and related volcanic features of the Kolumbo submarine volcanic chain (NE of Santorini Island, Aegean Volcanic Arc), Paraskevi Nomikou, Steven Carey, Katherine L.Croff Bell, Dimitros Papanikolaou, Konstantina Bejelou, Matina Alexandri, Kat Cantner, and Julie Fero Martin

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Microbial activity in the marine deep biosphere: progress and prospects, Beth N. Orcutt, Douglas E. LaRowe, Jennifer F. Biddle, Frederick S. Colwell, Brian T. Glazer, Brandi Kiel Reese, John B. Kirkpatrick, Laura L. Lapham, Heath J. Mills, Jason B. Sylvan, Scott D. Wankel, and C. Geoff Wheat

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Effects of Kuroshio intrusions on nonlinear internal waves in the South China Sea during winter, Jae Hun Park and David Farmer

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Heterogeneities from the first 100 million years recorded in deep mantle noble gases from the Northern Lau Back-arc Basin, Maria K. Peto, Sujoy Mukhopadhyay, and Katherine A. Kelley

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The challenges of using polyethylene passive samplers to determine dissolved concentrations of parent and alkylated PAHs under cold and saline conditions, Pamela J. Reitsma, Dave Adelman, and Rainer Lohmann

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Geodynamic Evolution of a Forearc Rift in the Southernmost Mariana Arc, Julia M. Ribeiro, Robert J. Stern, Fernando Martinez, Osamu Ishizuka, Susan G. Merle, Katherine Kelley, Elizabeth Y. Anthony, Minghua Ren, Yasuhiko Ohara, Mark Reagan, Guillaume Girard, and Sherman Bloomer

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How Do Fishing and Environmental Effects Propagate Among and Within Functional Groups?, Marie-Joëlle Rochet, Jeremy Collie, and Verena M. Trenkel

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Association of phosphate with rhyolite glass in marine Neogene tuffs from Patagonia, Argentina, Nora Rubinstein, Ana M. Fazio, Roberto A. Scasso, and Steven Carey