Publications from the faculty and research scientists of the Graduate School of Oceanography.

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Manuscripts from 2003

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Structure and Generation of Turbulence at Interfaces Strained by Internal Solitary Waves Propagating Shoreward over the Continental Shelf, J. N. Moum, David Farmer, W. D. Smyth, L. Armi, and S. Vagle

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Ozone depletion events observed in the high latitude surface layer during the TOPSE aircraft program, Brian A. Ridley, Brian G. Heikes, Julie A. Snow, and et al

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Chemical composition of Asian continental outflow over the western Pacific: Results from Transport and Chemical Evolution over the Pacific (TRACE‐P), R. S. Russo, R. W. Talbot, J. E. Dibb, E. Scheuer, G. Seid, C. E. Jordan, H. E. Fuelberg, G. W. Sachse, M. A. Avery, S. A. Vay, D. R. Blake, N. J. Blake, E. Atlas, A. Fried, S. T. Sandholm, D. Tan, H. B. Singh, J. Snow, and Brian G. Heikes

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Influence of dust and sulfate aerosols on ocean color spectra and chlorophyll a concentrations derived from SeaWiFS off the U.S. east coast, Stephanie E. Schollaert, James A. Yoder, John E. O'Reilly, and Douglas L. Hestphal

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Effects of surface heat flux‐induced sea surface temperature changes on tropical cyclone intensity, Weixing Shen and Isaac Ginis

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The front on the Northern Flank of Georges Bank in spring: 2. Cross‐frontal fluxes and mixing, David S. Ullman, Andrew C. Dale, Dave Hebert, and John A. Barth

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Springtime photochemistry at northern mid and high latitudes, Yuhang Wang, Brian Ridley, Alan Fried, Christopher Cantrell, Douglas Davis, Gao Chen, Julie Snow, Brian G. Heikes, Robert Talbot, Jack Dibb, Frank Flocke, Andrew Weinheimer, Nicola Blake, Donald Blake, Richard Shetter, Barry Lefer, Elliot Atlas, Michael Coffey, Jim Walega, and Brian Wert

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Biological Signature of Scotian Shelf Water Crossovers on Georges Bank During Spring 1997, Karen F. Wishner, Dian J. Gifford, Barbara K. Sullivan, James J. Bisagni, Dawn M. Outram, and Donna E. Van Keuren

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Seasonal and ENSO variability in global ocean phytoplankton chlorophyll derived from 4 years of SeaWiFS measurements, James A. Yoder and Maureen A. Kennely

Manuscripts from 2002

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SEASONAL DISTRIBUTION AND ABUNDANCE OF FISHES AND DECAPOD CRUSTACEANS IN A CAPE COD ESTUARY, Kenneth W. Able, Michael P. Fahay, Kenneth L. Heck Jr., Charles T. Roman, Mark A. Lazzari, and Susan C. Kaiser

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Occurrence and mechanisms of formation of a dramatic thin layer of marine snow in a shallow Pacific fjord, Alice L. Alldredge, Timothy J. Cowles, Sally MacIntyre, Jan E. B. Rines, Percy L. Donaghay, Charles F. Greenlaw, D. V. Holliday, Margaret M. Dekshenieks, James M. Sullivan, and J. Ronald V. Zaneveld

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Modeling phytoplankton production: problems with the Eppley curve and an empirical alternative, Mark J. Brush, John W. Brawley, Scott W. Nixon, and James N. Kremer

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Direct measurements of light attenuation by epiphytes on eelgrass Zostera marina, Mark J. Brush and Scott W. Nixon

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Comparison of algorithms for estimating ocean primary production from surface chlorophyll, temperature, and irradiance, Janet Campbell, David Antoine, Robert Armstrong, Kevin Arrigo, William Balch, Richard Barber, Michael Behrenfeld, Robert Bidigare, James Bishop, Mary-Elena Carr, Wayne Esaias, Paul Falkowski, Nicholas Hoepffner, Richard Iverson, David Keifer, Steven Lohrenz, John Marra, Andre Morel, John Ryan, Vladimir Vederinkov, Kirk Waters, Charles Yentsch, and James A. Yoder

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A Critical Evaluation of Interlaboratory Data on Total, Elemental, and Isotopic Carbon in the Carbonaceous Particle Reference Material, NIST SRM 1649a, L. A. Currie, B. A. Benner Jr., J. D. Kessler, D. R. Klinedinst, G. A. Klouda, J. V. Marolf, J. F. Slater, S. A. Wise, H. Cachier, R. Cary, J. C. Chow, J. Watson, E. R. M. Druffel, C. A. Masiello, T. I. Eglinton, A. Pearson, C. M. Reddy, Ö. Gustafsson, James G. Quinn, P. C. Hartmann, J. I. Hedges, K. M. Prentice, T. W. Kirchstetter, T. Novakow, H. Puxbaum, and H. Schmid

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Equatorial Pacific Subsurface Countercurrents: A Model–Data Comparison in Stream Coordinates, Kathleen A. Donohue, Eric Firing, G. Dail Rowe, Akio Ishida, and Humio Mitsudera

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Wave Kinematics at High Sea States, David Farmer, Li Ding, Donald Booth, and Martin Lohmann

NOAA-NASA Coastal Zone Color Scanner Reanalysis Effort, Watson W. Gregg, Margarita E. Conkright, John E. O'Reilly, Frederick S. Patt, Menghua H. Wang, and James A. Yoder

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Effects of pH on coastal marine phytoplankton, Kenneth R. Hinga

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Sources of upper tropospheric HOx over the South Pacific Convergence Zone: A case study, Céline Mari, Carine Saüt, Daniel J. Jacob, François Ravetta, Bruce Anderson, Melody A. Avery, Donald R. Blake, William H. Brune, Ian Faloona, G. L. Gregory, Brian G. Heikes, Glen W. Sachse, Scott T. Sandholm, Hanwant B. Singh, Robert W. Talbot, David Tan, and Stephanie Vay

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On the relative role of convection, chemistry, and transport over the South Pacific Convergence Zone during PEM-Tropics B: A case study, Céline Mari, Carine Saüt, Daniel J. Jacob, Amanda Staudt, Melody A. Avery, William H. Brune, Ian Faloona, Brian G. Heikes, Glen W. Sachse, Scott T. Sandholm, Hanwant B. Singh, and David Tan

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Combining Inverted Echo Sounder and Horizontal Electric Field Recorder Measurements to Obtain Absolute Velocity Profiles, Christopher S. Meinen, Douglas S. Luther, D. Randolph Watts, Karen L. Tracey, Alan D. Chave, and James Richman

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Captive dolphins, Tursiops truncatus, develop signature whistles that match acoustic features of human-made model sounds, Jennifer L. Miksis, Peter L. Tyack, and John R. Buck

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Stability‐induced modification of sea surface winds over Gulf Stream rings, Kyung-Ae Park and Peter C. Cornillon

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Thin layers and camouflage: hidden Pseudo-nitzschia spp. (Bacillariophyceae) populations in a fjord in the San Juan Islands, Washington, USA, J. E. B. Rines, Percy L. Donaghay, M. M. Dekshenieks, J. M. Sullivan, and M. S. Twardowski

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Using modern time series analysis techniques to predict ENSO events from the SOI time series, J. I. Salisbury and Mark Wimbush

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A Numerical Investigation of Land Surface Water on Landfalling Hurricanes, Weixing Shen, Isaac Ginis, and Robert E. Tuleya

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Three-dimensional propagation effects near the mid-Atlantic Bight shelf break (L), Kevin B. Smith, Chris W. Miller, Anthony F. D'Agostino, Brian Sperry, James H. Miller, and Gopu R. Potty

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Two Circulation Regimes of the Mediterranean Outflow Revealed by Lagrangian Measurements, Michael Sparrow, Olaf Boebel, Vassilis Zervakis, Walter Zenk, Alán Cantos-Figuerola, and W. John Gould

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A Pulsation Mode in the Antarctic Circumpolar Current South of Australia, Che Sun and D. Randolph Watts

Manuscripts from 2001

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A Characterization of the North Atlantic STMW Layer Climatology Using World Ocean Atlas 1994 Data, Michael A. Alfultis and Peter C. Cornillon

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Annual and Interannual Changes in the North Atlantic STMW Layer Properties, Michael A. Alfultis and Peter C. Cornillon

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Precise Masses for Wolf 1062 AB from Hubble Space Telescope Interferometric Astrometry and McDonald Observatory Radial Velocities, G. F. Benedict, B. E. McArthur, O. G. Franz, L. H. Wasserman, T. J. Henry, T. Takato, I. V. Strateva, J. L. Crawford, P. A. Ianna, D. W. McCarthy, E. Nelan, W. H. Jefferys, W. van Altena, P. J. Shelus, Paul D. Hemenway, R. L. Duncombe, D. Story, A. L. Whipple, A. J. Bradley, and L. W. Frederick

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Growth and development rates of the copepod Calanus finmarchicus reared in the laboratory, Robert G. Campbell, Melissa M. Wagner, Gregory J. Teegarden, Carla A. Boudreau, and Edward G. Durbin

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Temporal and spatial occurrence of thin phytoplankton layers in relation to physical processes, Margaret M. Dekshenieks, Percy L. Donaghay, James M. Sullivan, Jan E. B. Rines, Thomas R. Osborn, and Michael S. Twardowski

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Absolute geostrophic velocity within the Subantarctic Front in the Pacific Ocean, Kathleen A. Donohue, Erin Firing, and Shuiming Chen

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Changes in copepod distributions associated with increased turbulence from wind stress, L. S. Incze, David L. Hebert, N. Wolffe, N. Oakey, and D. Dye

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Bay anchovy Anchoa mitchilli in Narragansett Bay, Rhode Island. I. Population structure, growth and mortality, Amy E. Lapolla

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Volcanic Rocks in the Narragansett Basin, Southeastern New England: Petrology and Significance to Early Basin Formation, Anton Maria and O. Don Hermes

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New insights into deformation and fluid flow processes in the Nankai Trough accretionary prism: Results of Ocean Drilling Program Leg 190, Gregory F. Moore, Asahiko Taira, Adam Klaus, Luann Becker, Babette Boeckel, Barry A. Cragg, Allison Dean, Christopher L. Fergusson, Pierre Henry, Satoshi Hirano, Toshio Hisamitsu, Sabine Hunze, Miriam Kastner, Alex J. Maltman, Julia K. Morgan, Yuki Murakami, Demian M. Saffer, Mario Sánchez-Gómez, Elizabeth J. Screaton, David C. Smith, Arthur J. Spivack, Joan Steurer, Harold J. Tobin, Kohtaro Ujiie, Michael B. Underwood, and Moyra Wilson

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Pfiesteria: review of the science and identification of research gaps. Report for the National Center for Environmental Health, Centers for Disease Control and Prevention, Jonathan Samett, Gary S. Bignami, Robert Feldman, William Hawkins, Jerry Neff, and Theodore Smayda

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The impact of ocean coupling on hurricanes during landfall, Weixing Shen and Isaac Ginis

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Equilibration of Baroclinic Meanders and Deep Eddies in a Gulf Stream–type Jet over a Sloping Bottom, Georgi G. Sutyrin, Isaac Ginis, and Sergey A. Frolov

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Zooplankton feeding behavior and particle selection in natural plankton assemblages containing toxic Alexandrium spp., Gregory J. Teegarden, Robert G. Campbell, and Edward G. Durbin

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Nucleic acids and growth of Calanus finmarchicus in the laboratory under different food and temperature conditions, Melissa M. Wagner, Robert G. Campbell, Carla A. Boudreau, and Edward G. Durbin

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Mapping Abyssal Current and Pressure Fields under the Meandering Gulf Stream, D. Randolph Watts, Xiaoshu Qian, and Karen L. Tracey

Manuscripts from 2000

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A case study of transport of tropical marine boundary layer and lower tropospheric air masses to the northern midlatitude upper troposphere, William B. Grant, Edward V. Browell, Carolyn F. Butler, Marta A. Fenn, Marian B. Clayton, John R. Hannan, Henry E. Fuelberg, Donald R. Blake, Nicola J. Blake, Gerald L. Gregory, Brian G. Heikes, Glen W. Sachse, Hanwant B. Singh, Julie Snow, and Robert W. Talbot

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Interaction of binary tropical cyclones in a coupled tropical cyclone‐ocean model, Alexander Khain, Isaac Ginis, Aleksandr Falkovich, and Mitia Frumin

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Export production and carbonate dissolution in the central equatorial Pacific Ocean over the past 1 Myr, R. W. Murray, Christopher W. Knowlton, M. Leinen, A. C. Mix, and C. H. Polsky

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A Case Study of Ship Track Formation in a Polluted Marine Boundary Layer, Kevin J. Noone, Doug W. Johnson, Jonathan P. Taylor, Ronald J. Ferek, Tim Garrett, Peter V. Hobbs, Philip A. Durkee, Kurt Nielsen, Elisabeth Öström, Colin O'Dowd, Michael H. Smith, Lynn M. Russell, Richard C. Flagan, John H. Seinfeld, Lieve De Bock, René E. Van Grieken, James G. Hudson, Ian Brooks, Richard F. Gasparovic, and Robert Pockalny

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A Case Study of Ships Forming and Not Forming Tracks in Moderately Polluted Clouds, Kevin J. Noone, Elisabeth Öström, Ronald J. Ferek, Tim Garrett, Peter V. Hobbs, Doug W. Johnson, Lynn M. Russell, Richard C. Flagan, John H. Seinfeld, Colin D. O'Dowd, Michael H. Smith, Philip A. Durkee, Kurt Nielsen, James G. Hudson, Robert Pockalny, Lieve De Bock, René E. Van Grieken, Richard F. Gasparovic, and Ian Brooks

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Combustion Organic Aerosol as Cloud Condensation Nuclei in Ship Tracks, Lynn M. Russell, Kevin J. Noone, Ronald J. Ferek, Robert Pockalny, Richard C. Flagan, and John H. Seinfeld

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A Sensitivity Study of the Thermodynamic Environment on GFDL Model Hurricane Intensity: Implications for Global Warming, Weixing Shen, Robert E. Tuleya, and Isaac Ginis

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Biomass burning influences on the composition of the remote South Pacific troposphere: analysis based on observations from PEM-Tropics-A, H. B. Singh, W. Viezee, Y. Chen, J. Bradshaw, S. Sandholm, D. Blake, N. Blake, Brian G. Heikes, J. Snow, R. Talbot, E. Browell, G. Gregory, G. Sachse, and S. Vay

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Distribution and fate of selected oxygenated organic species in the troposphere and lower stratosphere over the Atlantic, H. Singh, Y. Chen, A. Tabazadeh, Y. Fukui, I. Bey, R. Yantosca, D. Jacob, F. Arnold, K. Wohlfrom, E. Atlas, F. Flocke, D. Blake, N. Blake, Brian G. Heikes, J. Snow, R. Talbot, G. Gregory, G. Sachse, S. Vay, and Y. Kondo

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Evaluation of Front Detection Methods for Satellite-Derived SST Data Using In Situ Observations, David S. Ullman and Peter C. Cornillon

Manuscripts from 1999

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Chemical characteristics of air from differing source regions during the Pacific Exploratory Mission‐Tropics A (PEM‐Tropics A), Ashley S. Board, Henry E. Fuelberg, Gerald L. Gregory, Brian G. Heikes, Martin G. Schultz, Donald R. Blake, Jack E. Dibb, Scott T. Sandholm, and Robert W. Talbot

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A Comparison of Satellite and In Situ–Based Sea Surface Temperature Climatologies, Kenneth S. Casey and Peter C. Cornillon

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Convective injection and photochemical decay of peroxides in the tropical upper troposphere: Methyl iodide as a tracer of marine convection, Daniel S. Cohan, Martin G. Schultz, Daniel J. Jacob, Brian G. Heikes, and Donald R. Blake

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Ozone and aerosol distributions and air mass characteristics over the South Pacific during the burning season, Marta A. Fenn, Edward V. Browell, Carolyn F. Butler, William B. Grant, Susan A. Kooi, Marian B. Clayton, Gerald L. Gregory, Reginald E. Newell, Yong Zhu, Jack E. Dibb, Henry E. Fuelberg, Bruce E. Anderson, Alan R. Bandy, Donald R. Blake, John D. Bradshaw, Brian G. Heikes, Glen W. Sachse, Scott T. Sandholm, Hanwant B. Singh, Robert W. Talbot, and Donald C. Thornton

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Jet Streaks in the Gulf Stream, Stephan D. Howden and D. Randolph Watts

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Kuroshio Meanders in the East China Sea, Charles James, Mark Wimbush, and Hiroshi Ichikawa

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A Numerical Investigation of the Local Ocean Response to Westerly Wind Burst Forcing in the Western Equatorial Pacific, Raymond A. Richardson, Isaac Ginis, and Lewis M. Rothstein

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Implementation of a Mesh Movement Scheme in a Multiply Nested Ocean Model and Its Application to Air–Sea Interaction Studies, C. Rowley and Isaac Ginis

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Metamorphosis in the summer flounder Paralichthys dentatus: changes in gill mitochondria-rich cells, Alex M. Schreiber and Jennifer Specker

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Remote sensing observations of winter phytoplankton blooms southwest of the Luzon Strait in the South China Sea, Dan-Ling Tang, I-Hsun Ni, Dana R. Kester, and Frank E. Müller-Karger

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Copepod grazing selection and particle discrimination on the basis of PSP toxin content, Gregory J. Teegarden

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Microscale Quantification of the Absorption by Dissolved and Particulate Material in Coastal Waters with an ac-9, Michael S. Twardowski, James M. Sullivan, Percy L. Donaghay, and J. Ronald V. Zaneveld

Manuscripts from 1998

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Model results of flow instabilities in the tropical Pacific Ocean, Kathleen A. Donohue and Mark Wimbush

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Operating an Acoustic Doppler Current Profiler aboard a Container Vessel, C. N. Flagg, G. Schwartze, E. Gottlieb, and Hans Thomas Rossby

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Ozone production efficiencies of acetone and peroxides in the upper troposphere, Ian Folkins, R. Chatfield, H. Singh, Y. Chen, and Brian G. Heikes

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Design of a Multiply Nested Primitive Equation Ocean Model, Isaac Ginis, R. A. Richarson, and Lewis M. Rothstein

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Determining geostrophic velocity shear profiles with inverted echo sounders, Yuguang He, D. Randolph Watts, and Karen L. Tracey

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The Annual Cycle of SST in the Eastern Tropical Pacific, Diagnosed in an Ocean GCM, William S. Kessler, Lewis M. Rothstein, and Dake Chen

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Response of primary producers to nutrient enrichment in a shallow estuary, Eleanor H. Kinney and Charles T. Roman

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Effects of zooplankton size and concentration and light intensity on the feeding behavior of Atlantic mackerel Scomber scombrus, William K. Macy, Sandra J. Sutherland, and Edward G. Durbin

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Photochemistry in biomass burning plumes and implications for tropospheric ozone over the tropical South Atlantic, Denise L. Mauzerall, Jennifer A. Logan, Daniel J. Jacob, Bruce E. Anderson, Donald R. Blake, John D. Bradshaw, Brian G. Heikes, Glenn W. Sachse, Hanwant Singh, and Bob Talbot

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Meteorite impact and the mass extinction of species at the Cretaceous/Tertiary boundary, Kevin O. Pope, Steven D'Hondt, and Charles R. Marshall

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Robust Course-Boundary Extraction Algorithms for Autonomous Vehicles, Chris Roman and Charles Reinholtz

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The Oleander Project: Monitoring the Variability of the Gulf Stream and Adjacent Waters between New Jersey and Bermuda, Hans Thomas Rossby and E. Gottlieb

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A Numerical Simulation of the Mean Water Pathways in the Subtropical and Tropical Pacific Ocean, Lewis M. Rothstein, Rong-Hua Zhang, Antonio J. Busalacchi, and Dake Chen

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RNA:DNA ratios as indicators of nutritional condition in the copepod Calanus finmarchicus, M. Wagner, Edward G. Durbin, and L. Buckley

Manuscripts from 1997

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Comparisons of trace constituents from ground stations and the DC‐8 aircraft during PEM‐West B, R. Arimoto, R. A. Duce, J. M. Prospero, D. L. Savoie, R. W. Talbot, J. E. Dibb, Brian G. Heikes, Barbara J. Ray, N. F. Lewis, and U. Tomza

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CH4 and δ18O of O2 records from Antarctic and Greenland ice: A clue for stratigraphic disturbance in the bottom part of the Greenland Ice Core Project and the Greenland Ice Sheet Project 2 ice cores, Jérôme Chappellaz, Ed Brook, Thomas Blunier, and Bruno Malaizé

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An Empirical Eigenfunction Analysis of Sea Surface Temperatures in the Western North Atlantic, Richard Everson, Peter C. Cornillon, Lawrence Sirovich, and Andrew Webber

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Estimation of Directional Surface Wave Spectra from a Towed Research Catamaran, Kurt A. Hanson, Tetsu Hara, Erik J. Bock, and Andrew B. Karachintsev

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Monitoring and modeling primary production in coastal waters: studies in Massachusetts Bay 1992-1994, John R. Kelly and Peter H. Doering

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Further evidence that the sound-speed algorithm of Del Grosso is more accurate than that of Chen and Millero, Christopher S. Meinen and D. Randolph Watts

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Nicoya Peninsula, Costa Rica: A single suite of Caribbean oceanic plateau magmas, Christopher W. Sinton, Robert A. Duncan, and Percy Denyer

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Analysis of Lagrangian Potential Vorticity Balance and Lateral Displacement of Water Parcels in Gulf Stream Meanders, Tao Song and Hans Thomas Rossby

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Chemical characteristics of continental outflow from Asia to the troposphere over the western Pacific Ocean during February‐March 1994: Results from PEM‐West B, R. W. Talbot, J. E. Dibb, B. L. Lefer, J. D. Bradshaw, S. T. Sandholm, D. R. Blake, N. J. Blake, G. W. Sachse, J. E. Collins Jr., Brian G. Heikes, John Merrill, G. L. Gregory, B. E. Anderson, H. B. Singh, D. C. Thornton, A. R. Bandy, and R. F. Pueschel

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Application of the Pitzer Model to Solar Salt Brine Chemistry, Vesna Vančina, Dana R. Kester, and Halka Bilinski

Manuscripts from 1996

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Cloud Detection from a Sequence of SST Images, Jean-François Cayula and Peter C. Cornillon

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Atmospheric sampling of Supertyphoon Mireille with NASA DC-8 aircraft on September 27, 1991, during PEM-West A, R E. Newell, Brian G. Heikes, John Merrill, and et al

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Summer and spring ozone profiles over the North Atlantic from ozonesonde measurements, S. J. Oltmans, H. Levy II, J. M. Harris, John Merrill, J. L. Moody, J. A. Lathrop, E. Cuevas, M. Trainer, M. S. O'Neill, J. M. Prospero, H. Vömel, and B. J. Johnson

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Ecology and life history traits of the benthopelagic mysid Boreomysis oparva from the eastern tropical Pacific oxygen minimum zone, Jennifer Saltzman

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Reactive nitrogen and ozone over the western Pacific: Distribution, partitioning, and sources, H. B. Singh, D. Herlth, R. Kolyer, L. Salas, J. D. Bradshaw, S. T. Sandholm, D. D. Davis, J. Crawford, Y. Kondo, R. Talbot, G. L. Gregory, G. W. Sachse, E. Brownell, D. R. Blake, F. S. Rowland, John Merrill, Brian G. Heikes, S. C. Liu, P. J. Crutzen, and M. Kanakidou

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Local ocean response to a multiphase westerly wind burst: 1. Dynamic response, W. D. Smyth, David L. Hebert, and J. N. Moum

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Local ocean response to a multiphase westerly wind burst: 2. Thermal and freshwater responses, W. D. Smyth, David L. Hebert, and J. N. Moum

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Chemical characteristics of continental outflow over the tropical South Atlantic Ocean from Brazil and Africa, R. W. Talbot, J. D. Bradshaw, S. T. Sandholm, S. Smyth, D. R. Blake, N. R. Blake, G. W. Sachse, J. E. Collins, Brian G. Heikes, B. E. Anderson, G. L. Gregory, H. B. Singh, B. L. Lefer, and A. S. Bachmeier