Publications from the faculty and research scientists of the Graduate School of Oceanography.
Manuscripts from 2015
Late Miocene-Quaternary fault evolution and interaction in the southern California Inner Continental Borderland, Christopher C. Sorlien, Jonathan T. Bennett, Marie-Helene Cormier, Brian A. Campbell, Craig Nicholson, and Robert L. Bauer
Evaluation and management implications of uncertainty in a multispecies size‐structured model of population and community responses to fishing, Robert B. Thorpe, Will J. F. Le Quesne, Fay Luxford, Jeremy S. Collie, and Simon Jennings
Bacterial Diversity and Community Composition from Seasurface to Subseafloor, Emily A. Walsh, John B. Kirkpatrick, Scott D. Rutherford, David C. Smith, Mitchell Sogin, and Steven D'Hondt
Bacterial and Archaeal Biogeography of the Deep Chlorophyll Maximum in the South Pacific Gyre, Emily A. Walsh, David C. Smith, Mitchell L. Sogin, and Steven D'Hondt
New Insights into Landslide Processes Around Volcanic Islands from Remotely Operated Vehicle (ROV) Observations Offshore Montserrat, S. F.L. Watt, M. Jutzeler, P. J. Talling, Steven Carey, R. S.J. Sparks, M. Tucker, A. J. Stinton, J. K. Fisher, D. Wall-Palmer, V. Huhnerbach, and S. G. Moreton
Detection and quantification of oil under sea ice: The view from below, J. P. Wilkinson, T. Boyd, B. Hagen, T. Maksym, S. Pegau, Chris Roman, H. Singh, and L. Zabilansky
Description and Analysis of the Ocean Component of NOAA’s Operational Hurricane Weather Research and Forecasting (HWRF) Model, Richard M. Yablonsky, Isaac Ginis, Biju Thomas, Vijay Tallapragada, Dmitry Sheinin, and Ligia Bernardet
The Influence of Sea Ice and Snow Cover and Nutrient Availability on the Formation of Massive Under-Ice Phytoplankton Blooms in the Chukchi Sea, Jinlun Zhang, Carin Ashjian, Robert Campbell, Yvette H. Spitz, Michael Steele, and Victoria Hill
Simulation of Observed PCBs and Pesticides in the Water Column during the North Atlantic Bloom Experiment, Lin Zhang, Louis Thibodeaux, Lee Jones, and Rainer Lohmann
Crustal and Upper Mantle Structure Beneath the Northeastern Tibetan Plateau from Joint Analysis of Receiver Functions and Rayleigh Wave Dispersions, Dan Zheng, Hongyi Li, Yang Shen, Jing Tan, Longbin Ouyang, and Xinfu Lu
Manuscripts from 2014
Icehouse–Greenhouse Variations in Marine Denitrification, T. J. Algeo, P. A. Meyers, Rebecca S. Robinson, H. Rowe, and G. Q. Jiang
Near-Bottom Circulation and Dispersion of Sediment Containing Alexandrium fundyense Cysts in the Gulf of Maine During 2010–2011, Alfredo L. Aretxabaleta, Bradford Butman, Richard P. Signell, P. Soupy Dalyander, Christopher R. Sherwood, Vitalii A. Sheremet, and Dennis J. McGillicuddy Jr.
Long-term variability of sea surface temperature in Taiwan Strait, Igor M. Belkin and Ming-An Lee
Rapid Eddy-Induced Modification of Subtropical Mode Water During the Kuroshio Extension System Study, Stuart P. Bishop and D. Randolph Watts
Variations in Fe3+/∑Fe of Mariana Arc Basalts and Mantle Wedge fO2, M. N. Brounce, K. A. Kelley, and E. Cottrell
Global Observations of Quasi-Zonal Bands in Microwave Sea Surface Temperature, C. E. Buckingham, P. C. Cornillon, F. Schloesser, and K. M. Obenour
Tropical Cyclone–Induced Thermocline Warming and Its Regional and Global Impacts, Michael R. Bueti, Isaac Ginis, Lewis M. Rothstein, and Stephen M. Griffies
Three-Dimensional Double-Ridge Internal Tide Resonance in Luzon Strait, Maarten C. Buijsman, Jody M. Klymak, Sonya Legg, Matthew H. Alford, David Farmer, Jennifer A. MacKinnon, Jonathan D. Nash, Jae-Hun Park, Andy Pickering, and Harper Simmons
Volatile Cycling of H2O, CO2, F, and Cl in the HIMU Mantle: A New Window Provided by Melt Inclusions from Oceanic Hot Spot Lavas at Mangaia, Cook Islands, Rita A. Cabral, Matthew G. Jackson, Kenneth T. Koga, Estelle F. Rose-Koga, Erik H. Hauri, Martin J. Whitehouse, Allison A. Price, James M.D. Day, Nobumichi Shimizu, and Katherine A. Kelley
Magnetic properties of uncultivated magnetotactic bacteria and their contribution to a stratified estuary iron cycle, A. P. Chen, Veronica M. Berounsky, M. K. Chan, M. G. Blackford, C. Cady, B. M. Moskowitz, P. Kraal, E. A. Lima, R. E. Kopp, G. R. Lumpkin, B. P. Weiss, P. Hesse, and N. G. F. Vella
Baroclinic Transport Time Series of the Antarctic Circumpolar Current Measured in Drake Passage, María Paz Chidichimo, Kathleen A. Donohue, D. Randolph Watts, and Karen L. Tracey
Evolutionary potential of marine phytoplankton under ocean acidification, Sinéad Collins, Björn Rost, and Tatiana A. Rynearson
Geoacoustic Inversion of Ship Radiated Noise in Shallow Water Using Data from a Single Hydrophone, Steven E. Crocker, Peter L. Nielsen, James H. Miller, and Martin Siderius
Exploring New Drilling Prospects in the Southwest Pacific, S. J. Gallagher, N. Exon, M. Seton, M. Ikehara, C. J. Hollis, R. Arculus, Steven D'Hondt, C. Foster, M. Gurnis, J. P. Kennett, R. McKay, A. Malakoff, J. Mori, K. Takai, and L. Wallace
Upper Mantle Structure of the Cascades from Full-Wave Ambient Noise Tomography: Evidence for 3D Mantle Upwelling in the Back-Arc, Haiying Gao and Yang Shen
On the Generation of Roll Vortices Due to the Inflection Point Instability of the Hurricane Boundary Layer Flow, Kun Gao and Isaac Ginis
Diurnal Variability of Persistent Organic Pollutants in the Atmosphere Over the Remote Southern Atlantic Ocean, Rosalinda Gioia, Matthew MacLeod, Javier Castro-Jiménez, Luca Nizzetto, Jordi Dachs, Rainer Lohmann, and Kevin C. Jones
Large Eddy Simulation of Sediment Transport Over Rippled Beds, J. C. Harris and Stephan Grilli
Active Pacific North America Plate boundary tectonics as evidenced by seismicity in the oceanic lithosphere offshore Baja California, Mexico, Egill Hauksson, Hiroo Kanamori, Joann Stock, Marie-Helene Cormier, and Mark Legg
Investigating the Effects of Mobile Bottom Fishing on Benthic Biota: A Systematic Review Protocol, Kathryn M. Hughes, Michel J. Kaiser, Simon Jennings, Robert A. McConnaughey, Roland Pitcher, Ray Hilborn, Ricardo O. Amoroso, Jeremy Collie, Jan Geert Hiddink, Ana M. Parma, and Adriaan Rijnsdorp
Reconstruction of Pacific Ocean Bottom Water Salinity During the Last Glacial Maximum, Tania Lado Insua, Arthur J. Spivack, Dennis Graham, Steven D'Hondt, and Kathryn Moran
The contribution of the Weddell Gyre to the lower limb of the Global Overturning Circulation, Loïc Jullion, Alberto C. Naveira Garabato, Sheldon Bacon, Michael P. Meredith, Pete J. Brown, Sinhue Torres-Valdés, Kevin G. Speer, Paul R. Holland, Jun Dong, Dorothée Bakker, Mario Hoppema, Brice Loose, Hugh J. Venables, William J. Jenkins, Marie-José Messias, and Eberhard Fahrbach
The Distribution of the Mid-to-Lower Crustal Low-Velocity Zone Beneath the Northeastern Tibetan Plateau Revealed from Ambient Noise Tomography, Hongyi Li, Yang Shen, Zhongxian Huang, Xinfu Li, Meng Gong, Danian Shi, Eric Sandoval, and Aibeng Li
Crustal Velocity Structure of the Northeastern Tibetan Plateau from Ambient Noise Surface-Wave Tomography and its Tectonic Implications, Xinfu Li, Hongyi Li, Yang Shen, Meng Gong, Danian Shi, Eric Sandvol, and Aibing Li
Organic Pollutants and Ocean Fronts Across the Atlantic Ocean: A Review, Rainer Lohmann and Igor M. Belkin
The Five Stable Noble Gases are Sensitive Unambiguous Tracers of Glacial Meltwater, B. Loose and W. J. Jenkins
A Parameter Model of Gas Exchange for the Seasonal Sea Ice Zone, Brice Loose, W. R. McGillis, D. Perovich, C. J. Zappa, and P. Schlosser
The Impact of Slab Dip Variations, Gaps and Rollback on Mantle Wedge Flow: Insights from Fluids Experiments, Julia G. MacDougall, Chris Kincaid, Sara Szwaja, and Karen M. Fischer
Estimates of Micro-, Nano-, and Picoplankton Contributions to Particle Export in the Northeast Pacific, B. L. Mackinson, S. Bradley Moran, M. W. Lomas, G. M. Stewart, and R. P. Kelly
Significance of Population Centers As Sources of Gaseous and Dissolved PAHs in the Lower Great Lakes, Carie A. McDonough, Mohammed A. Khairy, Derek C G Muir, and Rainer Lohmann
Pacific freshening drives Pliocene cooling and Asian monsoon intensification, Junsheng Nie, Thomas Stevens, Yongui Song, John W. King, Rui Zhang, Shunchuan Ji, Lisha Gong, and Danielle Cares
Post Eruption inflation of the East Pacific Rise at 9°50′ N, Scott L. Nooner, Spahr C. Webb, W. Roger Buck, and Marie-Helene Cormier
Changing pH in the Surface Ocean, Michael E.Q. Pilson
Black Carbon Concentrations and Sources in the Marine Boundary Layer of the Tropical Atlantic Ocean using Four Methodologies, K. Pohl, M. Cantwell, P. Herckes, and Rainer Lohmann
Targeted search for actinomycetes from nearshore and deep-sea marine sediments, Alejandra Prieto-Davó, Luis J. Villarreal-Gómez, Stephanie Forschner-Dancause, Alan T. Bull, James E.M. Stach, David C. Smith, David C. Rowley, and Paul R. Jensen
Sea State Dependence of the Wind Stress Over the Ocean Under Hurricane Winds, Brandon G. Reichl, Tetsu Hara, and Isaac Ginis
First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins, Maxim Rubin-Blum, Gilad Antler, Rami Tsadok, Eli Shemesh, James A. Austin Jr., Dwight F. Coleman, Beverly N. Goodman-Tchernov, Zvi Ben-Avraham, and Dan Tchernov
Glacial forcing of central Indonesian hydroclimate since 60,000 y B.P., James M. Russell, Hendrik Vogel, Bronwen L. Konecky, Satria Bijaksana, Yongsong Huang, Martin Melles, Nigel Wattrus, Kassandra Costa, and John W. King
Determination of in situ dissolved inorganic carbon concentration and alkalinity for marine sedimentary porewater, Justine Sauvage, Arthur J. Spivack, Richard W. Murray, and Steven D'Hondt
The Air-Sea Interface and Surface Stress Under Tropical Cyclones, Alexander V. Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, and Isaac Ginis
Basaltic Volcaniclastics from the Challenger Deep Forearc Segment, Mariana Convergent Margin: Implications for Tectonics and Magmatism of the Southernmost Izu–Bonin–Mariana Arc, Robert J. Stern, Minghua Ren, Katherine A. Kelley, Yasuhiko Ohara, Fernando Martinez, and Sherman H. Bloomer
Impact of Dominant Breaking Waves on Air–Sea Momentum Exchange and Boundary Layer Turbulence at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
Mercury bioaccumulation in cartilaginous fishes from Southern New England coastal waters: Contamination from a trophic ecology and human health perspective, David L. Taylor, Nicholas J. Kutil, Anna J. Malek, and Jeremy S. Collie
An Anomalous Near-Bottom Cross-Shelf Intrusion of Slope Water on the Southern New England Continental Shelf, D. S. Ullman, D. L. Codiga, A. Pfeiffer-Herbert, and Christopher R. Kincaid
The Mw 6.5 offshore Northern California earthquake of 10 January 2010: Ordinary stress drop on a high‐strength fault, Meng Wei and Jeffrey J. McGuire
Mesoscale Convective System Surface Pressure Anomalies Responsible for Meteotsunamis Along the U.S. East Coast on June 13th, 2013, Christina A. Wertman, Richard M. Yablonsky, Yang Shen, John Merrill, Christopher R. Kincaid, and Robert A. Pockalny
Below the Disappearing Marshes of an Urban Estuary: Historic Nitrogen Trends and Soil Structure, Cathleen Wigand, Charles T. Roman, Earl Davey, Mark Stolt, Roxanne Johnson, Alana Hanson, Elizabeth B. Watson, S. Bradley Moran, Donald R. Cahoon, James C. Lynch, and Patricia Rafferty
The great 2012 Arctic Ocean summer cyclone enhanced biological productivity on the shelves, Jinlun Zhang, Robert Campbell, Victoria Hill, Yvette H. Spitz, and Michael Steele
Manuscripts from 2013
Divergent Eddy Heat Fluxes in the Kuroshio Extension at 144°–148°E. Part I: Mean Structure, Stuart P. Bishop, D. Randolph Watts, and Kathleen A. Donohue
Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study, Philip W. Boyd, Tatiana A. Rynearson, Evelyn A. Armstrong, Feixue Fu, Kendra Hayashi, Zhangxi Hu, David A. Hutchins, Raphael M. Kudela, Elena Litchman, Margaret R. Mulholland, Uta Passow, Robert F. Strzepek, Kerry A. Whittaker, Elizabeth Yu, and Mridul K. Thomas
The contribution of eddies to striations in absolute dynamic topography, C. E. Buckingham and Peter C. Cornillon
Predation on Prerecruits Can Delay Rebuilding of Depleted Cod Stocks, Jeremy Collie, Cóilín Minto, Boris Worm, and Richard Bell
Rebuilding fish communities: the ghost of fisheries past and the virtue of patience, Jeremy Collie, Marie-Joëlle Rochet, and Richard Bell
Redox heterogeneity in MORB as a function of mantle source, Elizabeth Cottrell and Katherine A. Kelley
Sulfur degassing at Erta Ale (Ethiopia) and Masaya (Nicaragua) volcanoes: Implications for degassing processes and oxygen fugacities of basaltic systems, J. M. de Moor, T. P. Fischer, Z. D. Sharp, P. L. King, M. Wilke, R. E. Botcharnikov, E. Cottrell, M. Zelenski, B. Marty, K. Klimm, C. Rivard, D. Ayalew, C. Ramirez, and Katherine A. Kelley
IODP Expedition 329: Life and Habitability Beneath the Seafloor of the South Pacific Gyre, Steven D'Hondt, Fumio Inagaki, and Carlos Alvarez Zarikian
Assessment and Use of NGR Instrumentation on the JOIDES Resolution to Quantify U, Th, and K Concentrations in Marine Sediment, Ann G. Dunlea, Richard W. Murray, Robert N. Harris, Maxim A. Vasiliev, Helen Evans, Arthur J. Spivack, and Steven D'Hondt
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome, Bryndan P. Durham, Jana Grote, Kerry A. Whittaker, Sara J. Bender, Haiwei Luo, Sharon L. Grim, Julia M. Brown, John R. Casey, Anthony Dron, Lennin Florez-Leiva, Andreas Krupke, Catherine M. Luria, Aric H. Mine, Olivia D. Nigro, Santhiska Pather, Agathe Talarmin, Emma K. Wear, Thomas S. Weber, Jesse M. Wilson, Matthew J. Church, Edward F. DeLong, David M. Karl, Grieg F. Steward, John M. Eppley, Nikos C. Krypides, Stephan Schuster, and Michael S. Rappé
Equatorial Pacific peak in biological production regulated by nutrient and upwelling during the late Pliocene/early Pleistocene cooling, J. Etourneau, Rebecca S. Robinson, P. Martinez, and R. Schneider
Intrusive dike complexes, cumulate cores, and the extrusive growth of Hawaiian volcanoes, Ashton F. Flinders, Garrett Ito, Michael O. Garcia, John M. Sinton, Jim Kauahikaua, and Brian Taylor
Comparing sediment equilibrium partitioning and passive sampling techniques to estimate benthic biota PCDD/F concentrations in Newark Bay, New Jersey (U.S.A.), Carey L. Friedman and Rainer Lohmann
The mean composition of ocean ridge basalts, Allison Gale, Colleen A. Dalton, Charles H. Langmuir, Yongjun Su, and Jean-Guy Schilling
Vibrio cholerae Exploits Sub-Lethal Concentrations of a Competitor-Produced Antibiotic to Avoid Toxic Interactions, Jason R. Graff, Stephanie R. Forschner-Dancause, Susanne Menden-Deuer, Richard A. Long, and David C. Rowley
Swim Speed, Behavior, and Movement of North Atlantic Right Whales (Eubalaena glacialis) in Coastal Waters of Northeastern Florida, USA, James H.W. Hain, Joy D. Hampp, Shelia A. McKenney, Julie A. Albert, and Robert D. Kenney
A low‐relief shield volcano origin for the South Kaua‘i Swell, Garrett Ito, Michael O. Garcia, John R. Smith, Brian Taylor, Ashton Flinders, Brian Jicha, Seiko Yamasaki, Dominique Weis, Lisa Swinnard, and Chuck Blay
Feasibility of using low density polyethylene sheets to detect atmospheric organochlorine pesticides in Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann
Field Calibration of Low Density Polyethylene Passive Samplers for Gaseous POPs, Mohammed A. Khairy and Rainer Lohmann
Source Apportionment and Risk Assessment of Polycyclic Aromatic Hydrocarbons in the Atmospheric Environment of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann
New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece, Stephanos P. Kilias, Paraskevi Nomikou, Dimitrios Pappanikolaou, Paraskevi N. Polymenakou, Athanasios Godelitsas, Ariadne Argyraki, Steven Carey, Platon Gamaletsos, Theo J. Mertzimekis, Elenie Stathopoulou, Joerg Goettlicher, Ralph Steininger, Konstantina Betzelou, Isidoros Livanos, Christos Christakis, Katherine Croff Bell, and Michael Scoullos
Steady late quaternary slip rate on the Cinarcik section of the North Anatolian fault near Istanbul, Turkey, Hulya Kurt, C. C. Sorlien, L. Seeber, M. S. Steckler, D. J. Shillington, G. Cifci, Marie-Helene Cormier, J.-X. Dessa, O. Atgin, D. Dondurur, E. Demirbag, S. Okay, C. Imren, S. Gurcay, and H. Carton
SCIMPI: A New Borehole Observatory, T. Lado-Insua, K. Moran, I. Kulin, S. Farrington, and J. B. Newman
Vertical Eddy Diffusion as a Key Mechanism for Removing Perfluorooctanic Acid (PFOA) from the Global Surface Oceans, Rainer Lohmann, Elena Jurado, Henk A. Dijkstra, and Jordi Dachs
Concentrations, Fluxes and Residence Time of PBDEs Across the Tropical Atlantic Ocean, Rainer Lohmann, Jana Klanova, Petr Kukucka, Shifra Yonis, and Kevyn Bollinger
(Viewpoint): Science Should Guide TSCA Reform, Rainer Lohmann, Heather M. Stapleton, and Ronald A. Hites
Fluid Interactions That Enable Stealth Predation by the Upstream-Foraging Hydromedusa Craspedacusta sowerbyi, K. Lucas, S. P. Colin, J. H. Costello, K. Katja, and E. Klos
Climatic Variability of the Circulation in the Rhode Island Sound: A Modeling Study, Yiyong Luo, Lew Rothstein, Qianqian Liu, and Shuwen Zhang
Water as a New Matrix for Global Assessment of Hydrophilic POPs, Derek Muir and Rainer Lohmann
Microbial activity in the marine deep biosphere: progress and prospects, Beth N. Orcutt, Douglas E. LaRowe, Jennifer F. Biddle, Frederick S. Colwell, Brian T. Glazer, Brandi Kiel Reese, John B. Kirkpatrick, Laura L. Lapham, Heath J. Mills, Jason B. Sylvan, Scott D. Wankel, and C. Geoff Wheat
Heterogeneities from the first 100 million years recorded in deep mantle noble gases from the Northern Lau Back-arc Basin, Maria K. Peto, Sujoy Mukhopadhyay, and Katherine A. Kelley
The challenges of using polyethylene passive samplers to determine dissolved concentrations of parent and alkylated PAHs under cold and saline conditions, Pamela J. Reitsma, Dave Adelman, and Rainer Lohmann
Geodynamic Evolution of a Forearc Rift in the Southernmost Mariana Arc, Julia M. Ribeiro, Robert J. Stern, Fernando Martinez, Osamu Ishizuka, Susan G. Merle, Katherine Kelley, Elizabeth Y. Anthony, Minghua Ren, Yasuhiko Ohara, Mark Reagan, Guillaume Girard, and Sherman Bloomer
How Do Fishing and Environmental Effects Propagate Among and Within Functional Groups?, Marie-Joëlle Rochet, Jeremy Collie, and Verena M. Trenkel
Conservation in the Context of Climate Change: Practical Guidelines for Land Protection at Local Scales, Kevin Ruddock, Peter V. August, Christopher Damon, Charles LaBash, Pamela Rubinoff, and Donald Robadue Jr.
Analysis of Energy Flow in US GLOBEC Ecosystems Using End-to-End Models, James J. Ruzicka, John H. Steele, Sarah K. Gaichas, Tosca Ballerini, Dian J. Gifford, Richard D. Brodeur, and Eileen E. Hofmann
Using Hierarchical Bayes to Understand Movement, Health, and Survival in the Endangered North Atlantic Right Whale, Robert S. Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, and James S. Clark
Impact of Breaking Wave Form Drag on Near-Surface Turbulence and Drag Coefficient over Young Seas at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan
John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel
Processing of Underway CTD Data, D. S. Ullman and David Hebert
Four Current Meter Models Compared in Strong Currents in Drake Passage, D. Randolph Watts, Maureen A. Kennelly, Kathleen A. Donohue, Karen L. Tracey, Teresa K. Chereskin, Robert A. Weller, and Ivan Victoria
Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann