Publications from the Department of Fisheries, Animal and Veterinary Sciences faculty at the University of Rhode Island.

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Submissions from 2017

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Oyster-generated marine habitats: Their services, enhancement, restoration and monitoring, Loren D. Coen and Austin T. Humphries

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Effects of replacing fish meal with soya protein concentrate on growth, feed efficiency and digestibility in diets for snakehead, Channa striata, Tran Thi Thanh Hien, Tran Minh Phu, Tran Le Cam Tu, Nguyen Vinh Tien, Pham Minh Duc, and David A. Bengtson

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Weaning methods using formulated feeds for snakehead (Channa striata and Channa micropeltes) larvae, Tran Thi Thanh Hien, Bui Minh Tam, Tran Le Cam Tu, and David A. Bengtson

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Long-Term Oyster Recruitment and Growth are not Influenced by Substrate Type in China: Implications for Sustainable Oyster Reef Restoration, Weimin Quan, Ruiliang Fan, Yunlong Wang, and Austin T. Humphries

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Seasonal variation in testes size and density detected in belugas (Delphinapterus leucas) using ultrasonography, Justin T. Richard, Todd Schmitt, Martin Haulena, Noël Vezzi, J. Lawrence Dunn, Tracy A. Romano, and Becky L. Sartini

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Assessing the quantity and downstream performance of DNA isolated from Beluga (Delphinapterus leucas) blow samples, Justin T. Richard, Krystle Schultz, Caroline Goertz, Rod Hobbs, Tracy A. Romano, and Becky L. Sartini

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Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish, Victor Schmidt, Marta Gomez-Chiarri, Chelsea Roy, Katherine Smith, and Linda Amaral-Zettler

Submissions from 2016

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Recovery of Bioactive Peptides and Omega-3 Fatty Acids-Containing Phospholipids from Squid Processing By-Product Hydrolysate, Emmanouil Apostolidis, Panayotis D. Karayannakidis, and Chong M. Lee

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Effect of sargassum oligocystum hot-water extract on innate immune response and survival of summer flounder paralichthys dentatus to Vibrio harveyi challenge, Francis Nuestro Baleta and Marta Gómez-Chiarri

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Following the infection process of vibriosis in Manila clam (Ruditapes philippinarum) larvae through GFP-tagged pathogenic Vibrio species, Javier Dubert, David R. Nelson, Edward J. Spinard, Linda Kessner, Marta Gomez-Chiarri, Fiz da Costa, Susana Prado, and Juan L. Barja

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Reclassification of the larval pathogen for marine bivalves Vibrio tubiashii subsp. europaeus as Vibrio europaeus sp. nov, Javier Dubert, Jesús L. Romalde, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja

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Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida, Javier Dubert, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, Jesus L. Romalde, and Juan L. Barja

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Replacement of freshwater small-size fish by formulated feed in snakehead (Channa striata) aquaculture: Experimental and commercial-scale pond trials, with economic analysis, Tran Thi Thanh Hien, Nguyen Hoang Duc Trung, Bui Minh Tâm, Yo Minh Que Chau, Nguyen Hioang Huy, Chong M. Lee, and David A. Bengtson

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Directly Measured Denitrification Reveals Oyster Aquaculture and Restored Oyster Reefs Remove Nitrogen at Comparable High Rates, Austin T. Humphries, Suzanne G. Ayvazian, Joanna C. Carey, Boze T. Hancock, Sinead Grabbert, Donald Cobb, Charles J. Strobel, and Robinson W. Futweiler

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Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease), Linda Kessner, Edward Spinard, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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Establishing an Anthropogenic Nitrogen Baseline Using Native American Shell Middens, Autumn Oczkowski, Thomas Gumbley, Bobbi Carter, Ruth Carmichael, and Austin T. Humphries

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Performance of selectively-bred lines of eastern oyster, Crassostrea virginica, across eastern US estuaries, Dina A. Proestou, Bryan T. Vinyard, Ryan J. Corbett, Jessica Piesz, Standish K. Allen, Jessica M. Small, Cui Li, Ming Liu, Gregory DeBrosse, Ximing Guo, Paul Rawson, and Marta Gómez-Chiarri

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Identification and Salinity Tolerance of the Western Hemisphere Mussel Mytella charruana (D'Orbigny, 1842) in the Philippines, Michael A. Rice, Paul D. Rawson, Ashley D. Salinas, and Westly R. Rosario

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Efficacy of Probiotics in Preventing Vibriosis in the Larviculture of Different Species of Bivalve Shellfish, Saebom Sohn, Kathryn Markey Lundgren, Karin Tammi, Roxanna Smolowitz, David R. Nelson, David C. Rowley, and Marta Gómez-Chiarri

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Incorporation of soybean products in summer flounder (Paralichthys dentatus) feeds: Effects on growth and survival to bacterial challenge, Daniel Ward, David A. Bengtson, Chong M. Lee, and Marta Gomez-Chiarri

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Use of dry hydrolysate from squid and scallop product supplement in plant based practical diets for Pacific white shrimp Litopenaeus vannamei, Yangen Zhou, Ramasamy Thirumurugan, Qingkui Wang, Chong M. Lee, and D. Allen Davis

Submissions from 2015

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The use of -omic tools in the study of disease processes in marine bivalve mollusks, Marta Gómez-Chiarri, Ximing Guo, Arnaud Tanguy, Yan He, and Dina Proestou

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Developing tools for the study of molluscan immunity: Thesequencing of the genome of the eastern oyster, Crassostrea virginica, Marta Gómez-Chiarri, Wesley C. Warren, Ximing Guo, and Dina Proestou

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Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95, Meagan Hamblin, Edward Spinard, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Development of formulated diets for snakehead (Channa striata and Channa micropeltes): Can phytase and taurine supplementation increase use of soybean meal to replace fish meal?, Tran Thi Thanh Hien, Tran Thi Be, Chong M. Lee, and David A. Bengtson

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Oyster Reef Restoration Supports Increased Nekton Biomass and Potential Commercial Fishery Value, Austin T. Humphries and Megan K. La Peyre

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Assessing Shoreline Exposure and Oyster Habitat Suitability Maximizes Potential Success for Sustainable Shoreline Protection Using Restored Oyster Reefs, Megan K. La Peyre, Kayla Serra, T. Andrew Joyner, and Austin T. Humphries

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Establishing a national shellfish sanitation program in the Gambia, West Africa, M. A. Rice, F. Conteh, K. Kent, B. Crawford, B. Banja, F. Janha, and I. Bojang

Submissions from 2014

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The effect of vitamin E supplementation on an experimental Haemonchus contortus infection in lambs, B. M. De Wolf, A. M. Zajac, K. A. Hoffer, B. L. Sartini, S. Bowdridge, T. LaRoith, and K. H. Petersson

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Comparison of direct steam injection and steam-jacketed heating in squid protein hydrolysis for energy consumption and hydrolysis performance, Panayotis D. Karayannakidis, Emmanouil Apostolidis, and Chong M. Lee

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Identification of potential general markers of disease resistance in American oysters, Crassostrea virginica through gene expression studies, Chamilani Nikapitiya, Ian C. McDowell, Luisa Villamil, Pilar Muñoz, Sae Bom Sohn, and Marta Gomez-Chiarri

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Adult acclimation to combined temperature and pH stressors significantly enhances reproductive outcomes compared to short-term exposures, Coleen Suckling, Melody S. Clark, Joelle Richard, Simon A. Morley, Michael A.S. Thorne, Elizabeth M. Harper, and Lloyd S. Peck

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Helicobacter canis colonization in sheep: A zoonotic link, Alton G. Swennes, Michelle L. Turk, Elise M. Trowel, Cassandra Cullin, Zeli Shen, Jassia Pang, Katherine H. Petersson, Floyd E. Dewhirst, and James G. Fox

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Quantitative food habits of the bullnose ray, Myliobatis freminvillii, in Delaware Bay, John A. Szczepanski and David A. Bengtson

Submissions from 2013

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Effect of vitamin E on the immune system of ewes during late pregnancy and lactation, Saritha Anugu, Christina S. Petersson-Wolfe, Gerald F. Combs, and Katherine H. Petersson

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Cryopreserved bovine spermatozoal transcript profile as revealed by high-throughput ribonucleic acid sequencing, Christopher J. Card, Elizabeth J. Anderson, Samanta Zamberlan, Karin E. Krieger, Michael Kaproth, and Becky L. Sartini

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Probiotic Strains for Shellfish Aquaculture: Protection of Eastern Oyster, Crassostrea virginica, Larvae and Juveniles Againsl Bacterial Challenge, Murni Karim, Wenjing Zhao, David C. Rowley, David R. Nelson, and Marta Gomez-Chiarri

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The role of histones in the immune responses of aquatic invertebrates, C. Nikapitiya, T. Dorrington, and Marta Gómez-Chiarri

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Muscle growth in teleost fish is regulated by factors utilizing the activin II B receptor, Michael P. Phelps, Ian M. Jaffe, and Terence M. Bradley

Submissions from 2012

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Seasonal influence on phenolic-mediated antihyperglycemic properties of Canadian sugar and red maple leaves using in vitro assay models, Emmanouil Apostolidis, Liya Li, Bouhee Kang, Chong M. Lee, and Navindra P. P. Seeram

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Preface, Kathleen Castro, J. Stanley Cobb, Marta Gomez-Chiarri, and Michael Tlusty

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Vibrio parahaemolyticus in Rhode Island Coastal Ponds and the Estuarine Environment of Narragansett Bay, Annie M. Cox and Marta Gomez-Chiarri

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Nitrate and phosphate leaching under turfgrass fertilized with a squid-based organic fertilizer, Joseph C. Fetter, Rebecca N. Brown, Josef H. Görres, Chong Lee, and José A. A. Amador

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Spatial and temporal variation in otolith chemistry for tautog (Tautoga onitis) along the US northeast coast, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, and Daisy Durant

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Effects of sea-state on the physical performance of a survey bottom trawl, Philip J. Politis, Joseph T. DeAlteris, Russell W. Brown, and Archie T. Morrison

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Differential expression of cyclic-AMP responsive element modulator (CREM) mRNA isoforms during testicular development of boars, B. L. Sartini, M. Eerhart, and S. Green

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Quantitative PCR assay to determine prevalence and intensity of MSX (Haplosporidium nelsoni) in North Carolina and Rhode Island oysters Crassostrea virginica, Ami E. Wilbur, Susan E. Ford, Julie D. Gauthier, and Marta Gomez-Chiarri

Submissions from 2011

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Seasonal Variation of Phenolic Antioxidant-mediated α-glucosidase Inhibition of Ascophyllum nodosum, Emmanouil Apostolidis, Panagiotis D. Karayannakidis, Young In Kwon, Chong M. Lee, and Navindra P. P. Seeram

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Brown Seaweed-Derived Phenolic Phytochemicals and Their Biological Activities for Functional Food Ingredients with Focus on Ascophyllum nodosum, Emmanouil Apostolidis and Chong M. Lee

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In vitro evaluation of phenolic-enriched maple syrup extracts for inhibition of carbohydrate hydrolyzing enzymes relevant to type 2 diabetes management, Emmanouil Apostolidis, Liya Li, Chong Lee, and Navindra P. Seeram

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Integrating science into management: Ecological carrying capacity of bivalve shellfish aquaculture, Carrie Byron, David Bengtson, Barry Costa-Pierce, and John Calanni

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Calculating ecological carrying capacity of shellfish aquaculture using mass-balance modeling: Narragansett Bay, Rhode Island, Carrie Byron, Jason Link, Barry Costa-Pierce, and David Bengtson

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Modeling ecological carrying capacity of shellfish aquaculture in highly flushed temperate lagoons, Carrie Byron, Jason Link, Barry Costa-Pierce, and David engtson

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Upregulation in response to infection and antibacterial activity of oyster histone H4, Tarquin Dorrington, Luisa Villamil, and Marta Gómez-chiarri

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Partial Replacement of Fish Meal with Plant Protein Sources Singly and in Combination in Diets for Summer Flounder, Paralichthys dentatus, Almudena Enterria, Michael Slocum, David A. Bengtson, Panayotis D. Karayannakidis, and Chong M. Lee

Global trends in marine nutraceuticals, Chong M. Lee, Colin Barrow, Se Kwon Kim, Kazuo Miyashita, and Fereidoon Shahidi

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Effect of vitamin E supplementation on naturally acquired parasitic infection in lambs, C. E. MacGlaflin, A. M. Zajac, K. A. Rego, and K. H. Petersson

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Variations in growth of Tautog in nursery areas in Narragansett Bay and Rhode Island coastal ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, and Daisy Durant

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Short communication: Evaluation of confirmatory stains used for direct microscopic somatic cell counting of sheep milk, K. H. Petersson, L. A. Connor, C. S. Petersson-Wolfe, and K. A. Rego

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The Potential of Enhancing Muscle Growth in Cultured Fish through the Inhibition of Members of the Transforming Growth Factor-β Superfamily, Michael P. Phelps and Terence M. Bradley

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Effects of lactate on ground lamb colour stability and mitochondria- mediated metmyoglobin reduction, Ranjith Ramanathan, Richard A. Mancini, Poulson Joseph, Shuang Yin, Nantawat Tatiyaborworntham, Katherine H. Petersson, Qun Sun, and Muralikrishna R. Konda

Impact of quality parameters on the recovery of putrescine and cadaverine in fish using methanol-hydrochloric acid solvent extraction, Nicole L. L. Richard, Lori F. Pivarnik, P. Christopher Ellis, and Chong M. Lee

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Evaluation of a pound net leader designed to reduce Sea Turtle Bycatch, Ryan D. Silva, Joseph T. Dealteris, and Henry O. Milliken

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Control of lipid oxidation and texture changes in frozen sardine mince by combined use of milk protein concentrate and caffeic acid, Sebnem Tolasa, Sukran Cakli, Asli Cadun, and Chong M. Lee

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Lipid oxidation and omega-3 fatty acid retention in salmon and mackerel nuggets during frozen storage, Sebnem Tolasa, Chong M. Lee, and Sukran Calki

Submissions from 2010

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In vitro potential of ascophyllum nodosum phenolic antioxidant-mediated α-glucosidase and α-amylase inhibition, E. Apostolidis and C. M. Lee

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Development of salinity stress tests for larval striped bass, Morone saxatilis and inland Silver sides, Menidia beryllina, used in nutritional studies, Muhammad Ashraf, David A. Bengtson, and K. L. Simpson

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Culture of Summer Flounder, David Bengtson and George Nardi

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Observational methods to measure behaviors of captive cotton-top tamarins (Saguinus oedipus), Lily N. Edwards, Andrew E. Sorkin, Richard C. Rhodes, and Katherine H. Petersson

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Fish Mince: Cryostabilization and Product Formulation, Chong M. Lee

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Spatial and temporal variation in otolith chemistry for tautog (Tautoga onitis) in Narragansett Bay and Rhode Island coastal ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, and Daisy Durant

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Antimicrobial activity of 1% cetylpyridinium chloride against listeria spp. on fish, Catherine M. Palmer, Lori F. Pivarnik, Chong M. Lee, and Nicole L. Richard

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The influence of vitamin E on immune function and response to vaccination in older horses, K. H. Petersson, D. B. Burr, M. Gomez-Chiarri, and C. S. Petersson-Wolfe

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Physical and Oxidative Stabilization of Omega-3 Fatty Acids in Surimi Gels, Sebnem Tolasa, Chong M. Lee, and Sukran Cakli

Submissions from 2009

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Movement of fishes (Grunts: Haemulidae) across the coral reef seascape: A review of scales, patterns and processes, R. S. Appeldoorn, A. Aguilar-Perera, B. L.K. Bouwmeester, G. D. Dennis, R. L. Hill, W. Merten, C. W. Recksiek, and S. J. Williams

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Formulation of semi-purified diets for striped bass, Morone saxatilis, larvae, Muhammad Ashraf, David Bengtson, and K. L. Simpson

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Bacterial Community Profiling of the Eastern Oyster (Crassostrea virginica): Comparison of Culture-Dependent and Culture-Independent Outcomes, Kenneth J. La Valley, Steve Jones, Marta Gomez-Chiarri, Joseph DeAlteris, and Michael A. Rice

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Genetic diversity in captive and wild Matschie's tree kangaroo (Dendrolagus matschiei) from Huon Peninsula, Papua New Guinea, based on mtDNA control region sequences, Thomas J. McGreevy, Lisa Dabek, Marta Gomez-Chiarri, and Thomas P. Husband

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Overexpression of follistatin in trout stimulates increased muscling, Erika F. Medeiros, Michael P. Phelps, Fernando D. Fuentes, and Terence M. Bradley

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Evolution of tolerance to PCBs and susceptibility to a bacterial pathogen (Vibrio harveyi) in Atlantic killifish (Fundulus heteroclitus) from New Bedford (MA, USA) harbor, Diane Nacci, Marina Huber, Denise Champlin, Saro Jayaraman, Sarah Cohen, Eric Gauger, Allison Fong, and Marta Gomez-Chiarri

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A Simulation study of the effects of spatially complex population structure for Gulf of Maine Atlantic cod, Danielle Ameen Reich and Joseph Thomas DeAlteris

Submissions from 2008

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First characterization of shark nursery habitat in the United States Virgin Islands: Evidence of habitat partitioning by two shark species, Bryan M. DeAngelis, Camilla T. McCandless, Nancy E. Kohler, Conrad W. Recksiek, and Gregory B. Skomal

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Antimicrobial Peptides for Use in Oyster Aquaculture: Effect on Pathogens, Commensals, and Eukaryotic Expression Systems, Tarquin Dorrington and Marta Gomez-Chiarri

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Survival of eastern oysters Crassostrea virginica from three lines following experimental challenge with bacterial pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, and Marta Gomez-Chiarri

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Effect of milk protein concentrate on lipid oxidation and formation of fishy volatiles in herring mince (Clupea harengus) during frozen storage, H. J.F. Joaquin, S. Tolasa, A. C.M. Oliveira, C. M. Lee, and K. H. H. Lee

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Variance in rates of growth and development in larval and metamorphosing summer flounder, Paralichthys dentatus, R. S. Katersky, A. M. Schreiber, J. L. Specker, and D. A. Bengtson

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The effects of temperature, body size and growth rate on energy losses due to metabolism in early life stages of haddock (Melanogrammus aeglefinus), Kate F. Lankin, Myron A. Peck, Lawrence J. Buckley, and David A. Bengtson

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Development of a squid-hydrolysate-based larval diet and its feeding performance on summer flounder, paralichthys dentatus, larvae, Peizhi Lian, Chong M. Lee, and David A. Bengtson

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Gonadal Cycle of Northern Quahogs, Mercenaria mercenaria (Linne, 1758), from Fished and Non-fished Subpopulations in Narragansett Bay, Dora C. Marroquin-Mora and Michael A. Rice

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Thermal syneresis affected by heating schedule and moisture level in surimi gels, Y. D. Park, K. S. Yoon, and C. M. Lee

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Numerical Quantification of Perkinsus marinus in the American Oyster Crassostrea virginica (Gmelin, 1791) (Mollusca: Bivalvia) by Modern Stereology, Antonio Remacha-Trivino, Doranne Borsay-Horowitz, Christopher Dungan, Ximo Gual-Arnau, Javier Gomez-Leon, Luisa Villamil, and Marta Gomez-Chiarri

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Effect of matrix on recovery of biogenic amines in fish, Nicole Richard, Low Pivarnik, P. Christopher Elms, and Chong Lee

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Acoustic conditioning for recall/recapture of escaped Atlantic salmon and rainbow trout, Michael F. Tlusty, Jennifer Andrew, Kenneth Baldwin, and Terence M. Bradley

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A comparison between warm-water fish assemblages of Narragansett Bay and those of Long Island Sound waters, Abby Jane M. Wood, Jeremy S. Collie, and Jonathan A. Hare

Submissions from 2007

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Evaluation of various infused cryoprotective ingredients for their freeze-thaw stabilizing and texture improving properties in frozen red hake muscle, W. Bigelow and C. M. Lee

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Epilogue: Past successes, present misconceptions and future milestones in salmon smoltification research, Björn Thrandur Björnsson and Terence M. Bradley

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Fundulus as the premier teleost model in environmental biology: Opportunities for new insights using genomics, Karen G. Burnett, Lisa J. Bain, William S. Baldwin, Gloria V. Callard, Sarah Cohen, Richard T. Di Giulio, David H. Evans, Marta Gómez-Chiarri, Mark E. Hahn, Cindi A. Hoover, Sibel I. Karchner, Fumi Katoh, Deborah L. MacLatchy, William S. Marshall, Joel N. Meyer, Diane E. Nacci, Marjorie F. Oleksiak, Bernard B. Rees, Thomas D. Singer, John J. Stegeman, David W. Towle, Peter A. Van Veld, Wolfgang K. Vogelbein, Andrew Whitehead, Richard N. Winn, and Douglas L. Crawford

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Improvement of moistness and texture of high omega-3 fatty acid mackerel nuggets by inclusion of moisture-releasing ingredients, K. H. Lee, H. Joaquin, and C. M. Lee

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EPIZOOTIOLOGY OF QUAHOG PARASITE UNKNOWN (QPX) DISEASE IN NORTHERN QUAHOGS (=HARD CLAMS) MERCENARIA MERCENARIA, M. MAILLE LYONS, ROXANNA SMOLOWITZ, and Marta Gomez-Chiarri

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Characterizations of fish gelatin films added with gellan and κ-carrageenan, Yudi Pranoto, Chong Min Lee, and Hyun Jin Park