All URI faculty publications that are in DigitalCommons@URI are listed here. Some articles include full-text PDFs, and some include links to the publications on journal sites. This list includes all articles that faculty members have chosen to deposit according to the URI Open Access Policy, as well as other articles. This is not a comprehensive list of scholarly publications by URI faculty members.

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Submissions from 2013

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Mechanistic insights into isoform-dependent and species-specific regulation of bile salt export pump by farnesoid X receptor, Xiulong Song, Yuan Chen, Leila Valanejad, Rajani Kaimal, Bingfang Yan, Matthew Stoner, and Ruitang Deng

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pH (Low) Insertion Peptide (pHLIP) Targets Ischemic Myocardium, Eugene A. Sosunov, Evgeny P. Anyukhovsky, Alexander A. Sosunov, Anna Moshnikova, Dayanjali Wijesinghe, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

Outside the black box: Re-assessing pediatric antidepressant prescription, Jacqueline A. Sparks and Barry L. Duncan

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Report from the field - Overview of the Sixth Annual Vaccine Renaissance Conference, Denice Spero, Lauren Levitz, and Anne S. De Groot

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The effect of recording methods on the frequency response of breathing sounds measured with an electronic stethoscope, Andrew Spiewak, Brittany Alphonse, Erik Walder, Gary Comtois, Eugene Chabot, and Ying Sun

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Deductibles vs. Coinsurance in Shallow-Loss Crop Insurance, Thomas W. Sproul, David Zilberman, and Joseph C. Cooper

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Inclusion and Exclusion in Some Feminist Utopian Fictions, Karen F. Stein

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Broad Salinity Tolerance as a Refuge from Predation in the Harmful Raphidophyte Alga Heterosigma akashiwo (Raphidophyceae), Suzanne L. Strom, Elizabeth L. Harvey, Kerri A. Fredrickson, and Susanne Menden-Deuer

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Short-term treatment with tolfenamic acid improves cognitive functions in Alzheimer's disease mice, Gehad M. Subaiea, Lina I. Adwan, Aseef H. Ahmed, Karen E. Stevens, and Nasser H. Zawia

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Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori, Yoshitaka Suetsugu, Ryo Futahashi, Hiroyuki Kanamori, Keiko Kadono-Okuda, Shun-ichi Sasanuma, Junko Narukawa, Masahiro Ajimura, Nobukazu Namiki, Michihiko Shimomura, Hideki Sezutsu, Mizuko Osanai-Futahashi, Masataka G. Suzuki, Takaaki Daimon, Tetsuro Shinoda, Kiyoko Taniai, Kiyoshi Asaoka, Ryusuke Niwa, Shinpei Kawaoka, Susumu Katsuma, Toshiki Tamura, Hiroaki Noda, Masahiro Kasahara, Sumio Sugano, Yutaka Suzuki, Haruhiko Fujiwara, Kallare P. Arunkumar, Archana Tomar, Javaregowda Nagaraju, Marian R. Goldsmith, Qili Feng, Qingyou Xia, Kimiko Yamamoto, Toru Shimada, and Kazuei Mita

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Sustaining Reform-Based Science Teaching of Preservice and Inservice Elementary School Teachers, Barbara K. Sullivan-Watts, Barbara L. Nowicki, Minsuk K. Shim, and Betty J. Young

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A damage-based cohesive zone model of intergranular crack growth in a nickel-based superalloy, Yaofeng Sun, Kimberly MacIejewski, and Hamouda Ghonem

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Synthesis of novel ciprofloxacin analogues and evaluation of their anti-proliferative effect on human cancer cell lines, Narva Suresh, Hunsur Nagendra Nagesh, Kondapalli V. G. C. Sekhar, Anil Kumar, Amir N. Shirazi, and Keykavous Parang

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Regulatory T cell epitopes (Tregitopes) in IgG induce tolerance in vivo and lack immunogenicity per se, Yan Su, Robert Rossi, Anne S. De Groot, and David W. Scott

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Impact of Breaking Wave Form Drag on Near-Surface Turbulence and Drag Coefficient over Young Seas at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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Spoof Detection Using Multiple COTS Receivers in Safety Critical Applications, Peter F. Swaszek and Richard J. Hartnett

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Analysis of a Simple, Multi-Receiver GPS Spoof Detector, Peter F. Swaszek, Richard J. Hartnett, Matthew V. Kempe, and Gregory W. Johnson

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A modified PSO based particle filter algorithm for object tracking, Yufei Tang, Siyao Fu, Bo Tang, and Haibo He

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Adaptive control for an HVDC transmission link with FACTS and a wind farm, Yufei Tang, Haibo He, and Jinyu Wen

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Comparative study between HDP and PSS on DFIG damping control, Yufei Tang, Haibo He, and Jinyu Wen

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Optimized control of DFIG based wind generation using swarm intelligence, Yufei Tang, Haibo He, and Jinyu Wen

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Optimized control of DFIG-based wind generation using sensitivity analysis and particle swarm optimization, Yufei Tang, Ping Ju, Haibo He, Chuan Qin, and Feng Wu

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Activity of tobramycin and polymyxin-E against Pseudomonas aeruginosa biofilm coated medical grade endotracheal tubes., Keiko Tarquinio, Confreda, James Shurko, and Kerry L. LaPlante

Preface, Nikolaos Thomaidis and Gordon H. Dash

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Recent advances in computational finance, Nikolaos Thomaidis and Gordon H. Dash

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ACSM's new preparticipation health screening recommendations from ACSM's guidelines for exercise testing and prescription, ninth edition, Paul D. Thompson, Ross Arena, Deborah Riebe, and Linda S. Pescatello

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Preliminary observation of complex salt-fresh water mixing in a beach aquifer, Paul Thorn and Daniel Urish

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Hearing Loss in Perinatally HIV-infected and HIV-exposed but Uninfected Children and Adolescents, Peter Torre III, J. Hoffman, Ashley L. Buchanan, George K. Silberry, Mabel Rice, Patricia A. Sirois, and Paige L. Williams

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Metallic and Ceramic Thin Film Thermocouples for Gas Turbine Engines, Ian M. Tougas, Martin Amani, and Otto J. Gregory

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Metallic and ceramic thin film thermocouples for gas turbine engine applications, Ian M. Tougas and Otto J. Gregory

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Thin film platinum-palladium thermocouples for gas turbine engine applications, Ian M. Tougas and Otto J. Gregory

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Feeding styles and evening family meals among recent immigrants, Alison Tovar, Erin Hennessy, Aviva Must, Sheryl O. Hughes, David M. Gute, Sarah Sliwa, Rebecca J. Boulos, Emily Kuroos Vikre, Christina Luongo Kamins, Kerline Tofuri, Alex Pirie, and Christina D. Economos

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Ventilation rates and activity levels of juvenile jumbo squid under metabolic suppression in the oxygen minimum zone, Katja Trübenbach, Maria R. Pegado, Brad A. Seibel, and Rui Rosa

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Political connections and privatization: Evidence from China, Guoqian Tu, Bingxuan Lin, and Feng Liu

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John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel

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Processing of Underway CTD Data, D. S. Ullman and David Hebert

Health Studies Program Newsletter for 2013, URI Health Studies Program

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Insights into the Conformation of Aminofluorene-Deoxyguanine Adduct in a DNA Polymerase Active Site, Vaidyanathan G. Vaidyanathan, Fengting Liang, William A. Beard, David D. Shock, Samuel H. Wilson, and Bongsup P. Cho

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Degradation of mangrove tissues by arboreal termites (Nasutitermes acajutlae) and their role in the mangrove C cycle (Puerto Rico): Chemical characterization and organic matter provenance using bulk δ13C, C/N, alkaline CuO oxidation‐GC/MS, and solid‐state 13C NMR, Christopher H. Vane, Alexander W. Kim, Vicky Moss-Hayes, Collin E. Snape, Miguel Castro Diaz, Nicole S. Khan, Simon E. Engelhart, and Benjamin P. Horton

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Hayek's unacknowledged disciple: An exploration of the political and intellectual relationship of F. A. Hayek and Aaron director (1945-1950), Robert Van Horn

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What Would Adam Smith Have on His iPod? Uses of Music in Teaching the History of Economic Thought, Robert Van Horn and Monica Van Horn

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Testing 40 Predictions From the Transtheoretical Model Again, With Confidence, Wayne F. Velicer, Leslie Ann D. Brick, Joseph L. Fava, and James O. Prochaska

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Multiple behavior interventions to prevent substance abuse and increase energy balance behaviors in middle school students, Wayne F. Velicer, Colleen A. Redding, Andrea L. Paiva, Leanne M. Mauriello, Bryan Blissmer, Karin Oatley, Kathryn S. Meier, Steven F. Babbin, Heather McGee, James O. Prochaska, Caitlin Burditt, and Anne C. Fernandez

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Guest editorial special section on computational intelligence applications in smart grid, Ganesh Kumar Venayagamoorthy, Jung Wook Park, Komla Folly, and Haibo He

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Attachment of a hydrophobically modified biopolymer at the oil-water interface in the treatment of oil spills, Pradeep Venkataraman, Jingjian Tang, Etham Frenkel, Gary L. McPherson, Jibao He, Srinivasa R. Raghavan, Vladimir Kolesnichenko, Arijit Bose, and Vijay T. John

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Changes in the source of nutrients associated with oceanographic dynamics offshore southern Chile (41°S) over the last 25,000years, Thomas J. Verleye, Philippe Martinez, Rebecca S. Robinson, and Stephen Louwye

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Brief History of the Honor Society of Phi Kappa Phi at the University of Rhode Island, Michael Vocino

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Reliability modeling of wireless sensors, Chaonan Wang, Liudong Xing, Vinod M. Vokkarane, and Yan Sun

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Peroxide responsive regulator PerR of group A streptococcus is required for the expression of phage-associated DNase Sda1 under oxidative stress, Chih Hung Wang, Chuan Chiang-Ni, Hsin Tzu Kuo, Po Xing Zheng, Chih Cheng Tsou, Shuying Wang, Pei Jane Tsai, Woei Jer Chuang, Yee Shin Lin, Ching Chuan Liu, and Jiunn Jong Wu

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Fluid structure interaction during shock loading in a compressible fluid, Erheng Wang, Jefferson Wright, and Arun Shukla

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Activity analyzer for guided independent living environments (AAGILE), Tanya Wang, Joshua Harvey, Eugene Chabot, Ying Sun, and Patricia Burbank

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Fossil slabs attached to unsubducted fragments of the Farallon plate, Yun Wang, Donald W. Forsyth, Christina J. Rau, Nina Carriero, Brandon Schmandt, James B. Gaherty, and Brian K. Savage

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Four Current Meter Models Compared in Strong Currents in Drake Passage, D. Randolph Watts, Maureen A. Kennelly, Kathleen A. Donohue, Karen L. Tracey, Teresa K. Chereskin, Robert A. Weller, and Ivan Victoria

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Family of pH (Low) Insertion Peptides for Tumor Targeting, Dhammika Weerakkody, Anna Moshnikova, Mak S. Thakur, Valentina Moshnikova, Jennifer Daniels, Donald Engelman, Oleg A. Andreev, and Yana K. Reshetnyak

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Alatzas: Handwoven Fabrics During the Early Industrial Period in Greece (1880–1920), Linda M. Welters

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Regulation of hepatic phase II metabolism in pregnant mice, Xia Wen, C. Donepudi, Paul E. Thomas, Angela L. Slitt, Roberta S. King, and Lauren M. Aleksunes

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A software platform for enhancing integrity in online testing, Stu Westin

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The performance of college students with and without adhd: Neuropsychological, academic, and psychosocial functioning, Lisa Weyandt, George J. Dupaul, Genevieve Verdi, Joseph S. Rossi, Anthony J. Swentosky, Brigid S. Vilardo, Sean M. O'Dell, and Kristen S. Carson

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Misuse of prescription stimulants among college students: A review of the literature and implications for morphological and cognitive effects on brain functioning, Lisa L. Weyandt, Marisa E. Marraccini, Bergljot Gyda Gudmundsdottir, Brynheld Martinez Zavras, Kyle D. Turcotte, Bailey A. Munro, and Alex J. Amoroso

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Neuroimaging and ADHD: FMRI, PET, DTI findings, and methodological limitations, Lisa Weyandt, Anthony Swentosky, and Bergljot Gyda Gudmundsdottir

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Unresolved complex mixture (UCM) in coastal environments is derived from fossil sources, Helen K. White, Li Xu, Paul Hartmann, James G. Quinn, and Christopher M. Reddy

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pH Dependent Transfer of Nano-pores into Membrane of Cancer Cells to Induce Apoptosis, Dayanjali Wijesinghe, Mohan C. M. Arachchige, Andrew Lu, Yana K. Reshetnyak, and Oleg A. Andreev

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Spatially explicit model of wintering common loons: conservation implications, Kristopher J. Winiarski, David L. Miller, Peter W. C. Patton, and Scott R. McWilliams

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High population density recruitment and survival of a harvested coral reef fish, Clare L. Wormald, Mark A. Steele, and Graham E. Forrester

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Carboxylesterase-2 is a highly sensitive target of the antiobesity agent orlistat with profound implications in the activation of anticancer prodrugs, Da Xiao, Deshi Shi, Dongfang Yang, Benjamin Barthel, Tad H. Koch, and Bingfang Yan

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Regulation of carboxylesterase-2 expression by p53 family proteins and enhanced anti-cancer activities among 5-fluorouracil, irinotecan and doxazolidine prodrug, Da Xiao, Yang, Liangran Guo, Wei Lu, Margaret Charpentier, and Bingfang Yan

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Family economic well-being, Jing Jian Xiao

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Keap1-Knockdown Decreases Fasting-Induced Fatty Liver via Altered Lipid Metabolism and Decreased Fatty Acid Mobilization from Adipose Tissue, Jialin Xu, Ajay C. Donepudi, Jamie E. Moscovitz, and Angela Slitt

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L1 graph based on sparse coding for feature selection, Jin Xu, Guang Yang, Hong Man, and Haibo He

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Improving the performance of graphite/LiNi0.5Mn 1.5O4 cells at high voltage and elevated temperature with added lithium Bis(oxalato) borate (LiBOB), Mengqing Xu, Liu Zhou, Yingnan Dong, Yanjing Chen, Arnd Garsuch, and Brett L. Lucht

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Online learning control using adaptive critic designs with sparse kernel machines, Xin Xu, Zhongsheng Hou, Chuanqiang Lian, and Haibo He

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Impact of a warm ocean Eddy's circulation on hurricane-induced sea surface cooling with implications for hurricane intensity, Richard M. Yablonsky and Isaac Ginis

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Downregulation of sulfotransferase expression and activity in diseased human livers, Emine B. Yalcin, More, Karissa L. Neira, Zhenqiang James Lu, Nathan J. Cherrington, Angela L. Slitt, and Roberta S. King

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Effect of the surface tension of liquid-solid interface on liquid flow in parallel-plate sub-micron channels using multi-body dissipative particle dynamics, Toru Yamada, Yutaka Asako, Mohammad Faghri, and Bengt Sunden

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Diffusive-ballistic heat transport in thin films using energy conserving dissipative particle dynamics, Toru Yamada, Sina Hamian, Bengt Sundén, Keunhan Park, and Mohammad Faghri

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Diffusive-ballistic heat transport in a two-dimensional square plate using energy conserving dissipative particle dynamics, Toru Yamada, Keunhan Park, Yutaka Asako, Mohammad Faghri, and Bengt Sund́en

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Numerical study on the diffusive-ballistic heat transport in a two-dimensional square plate, Toru Yamada, Keunhan Park, Yutaka Asako, Mohammad Faghri, and Bengt Sundén

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A new metadata update method for fast recovery of SSD cache, Jing Yang and Qing Yang

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Dispersion of the resonant nonlinear optical susceptibility obtained with femtosecond time-domain coherent anti-Stokes Raman scattering, Shan Yang and Feruz Ganikhanov

Numerical conditioning and stability of PRCE and ERA methods, Wen Long Yang, Sau-Lon James Hu, and Hua Jun Li

Prony-based method for time-frequency analysis of marine riser viv data, Wen Long Yang, S.-L. James Hu, and Ze Li

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Multi-contingency cascading analysis of smart grid based on self-organizing map, Jun Yan, Yihai Zhu, Haibo He, and Yan Sun

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Revealing temporal features of attacks against smart grid, Jun Yan, Yihai Zhu, Haibo He, and Yan Sun

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pHLIP peptide targets nanogold particles to tumors, Lan Yao, Jennifer Daniels, Anna Moshnikova, Sergey Kuznetsov, Aftab Ahmed, Donald M. Engelman, Yana Reshetnyak, and Oleg A. Andreev

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Erratum: pHLIP peptide targets nanogold particles to tumors (Proceedings of the National Academy of Sciences of the United States of America (2012) 110 (465-470) DOI: 10.1073/pnas.1219665110), Lan Yao, Jennifer Daniels, Anna Moshnikova, Sergey Kuznetsov, Aftab Ahmed, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

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pHLIP-Mediated Delivery of PEGylated Liposomes to Cancer Cells, Lan Yao, Jennifer Daniels, Dayanjali Wijesinghe, Oleg A. Andreev, and Yana K. Reshetnyak

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Treatment-enhanced paired action contributes substantially to change across multiple health behaviors: Secondary analyses of five randomized trials, Hui Qing Yin, James O. Prochaska, Joseph S. Rossi, Colleen A. Redding, Andrea L. Paiva, Bryan Blissmer, Wayne F. Velicer, Sara S. Johnson, and Hisanori Kobayashi

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Kaempferol inhibits IL‑1β‑induced proliferation of rheumatoid arthritis synovial fibroblasts and the production of COX‑2, PGE2 and MMPs, Ha-Yong Yoon, Lee, Hyun Lee, In Jin Cho, Yun Jung Choi, Myung-Soon Sung, Han-Gyul Yoo, and Wan-Hee Yoo

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Characteristics of Mild Dengue Virus Infection in Thai Children, In-Kyu Yoon, Anon Srikiatkhachorn, Laura Hermann, Darunee Buddhari, Thomas W. Scott, Richard G. Jarman, Jared Aldstadt, Ananda Nisalak, Suwich Thammapalo, Piraya Bhoomiboonchoo, Mammen P. Mammen, Sharone Green, Robert V. Gibbons, Timothy P. Endy, and Alan L. Rothman

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New phenolics from the flowers of punica granatum and their in vitro α-glucosidase inhibitory activities, Tao Yuan, Chunpeng Wan, Hang Ma, and Navindra P. Seeram

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Routing-toward-primary-user attack and belief propagation-based defense in cognitive radio networks, Zhou Yuan, Zhu Han, Yan Lindsay Sun, Husheng Li, and Ju Bin Song

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Special Issue Editorial: Computational Intelligence and Applications, Zhigang Zeng and Haibo He

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Comparison of the bacterial removal performance of silver nanoparticles and a polymer based quaternary amine functiaonalized silsesquioxane coated point-of-use ceramic water filters, Hongyin Zhang and Vinka Oyanedel-Craver

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Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann

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A new discrete-continuous algorithm for radial basis function networks construction, Long Zhang, Kang Li, Haibo He, and George W. Irwin

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Real-time implementation of a self-recovery EMG pattern recognition interface for artificial arms, Xiaorong Zhang, He Huang, and Qing Yang

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The variation of land surface phenology from 1982 to 2006 along the appalachian trail, Jianjun Zhao, Yeqiao Wang, Hirofumi Hashimoto, Forrest S. Melton, Samuel H. Hiatt, Hongyan Zhang, and Ramakrishna R. Nemani

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ABCC3 as a marker for multidrug resistance in non-small cell lung cancer, Yanbin Zhao, Hailing Lu, An Yan, Yanmei Yang, Qingwei Meng, Lichun Sun, Hui Pang, Chunhong Li, Xiaoqun Dong, and Li Cai

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Robust controller design of continuous-time nonlinear system using neural network, Xiangnan Zhong, Haibo He, and Danil V. Prokhorov

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Performance of lithium tetrafluorooxalatophosphate in methyl butyrate electrolytes, Liu Zhou, Mengqing Xu, and Brett L. Lucht