All URI faculty publications that are in DigitalCommons@URI are listed here. Some articles include full-text PDFs, and some include links to the publications on journal sites. This list includes all articles that faculty members have chosen to deposit according to the URI Open Access Policy, as well as other articles. This is not a comprehensive list of scholarly publications by URI faculty members.

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Manuscripts from 2014

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Expansion of pelagic denitrification during early Pleistocene cooling, Rebecca S. Robinson, Johan Etourneau, Philippe M. Martinez, and Ralph Schneider

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Deep-Sea Octopus (Graneledone boreopacifica) Conducts the Longest-Known Egg-Brooding Period of Any Animal, Bruce Robison, Brad A. Seibel, and Jeffrey Drazen

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Transcranial focal electrical stimulation via tripolar concentric ring electrodes does not modify the short- and long-term memory formation in rats evaluated in the novel object recognition test, G. Rogel-Salazar, H. Luna-Munguía, K. E. Stevens, and Walter G. Besio

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On the structure and distribution of thin anticyclonic lenses in the southeast pacific ocean, T. Rossby

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On the long-term stability of Gulf Stream transport based on 20 years of direct measurements, T. Rossby, C. N. Flagg, K. Donohue, A. Sanchez-Franks, and J. Lillibridge

DHIM Supporting Immunologic Investigations and the Identification of Immune Correlates of Protection, Alan L. Rothman

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Multivariate statistical monitoring as applied to clean-in-place (CIP) and steam-in-place (SIP) operations in biopharmaceutical manufacturing, Kevin Roy, Cenk Undey, Thomas Mistretta, Gregory Naugle, and Manbir Sodhi

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First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins, Maxim Rubin-Blum, Gilad Antler, Rami Tsadok, Eli Shemesh, James A. Austin Jr., Dwight F. Coleman, Beverly N. Goodman-Tchernov, Zvi Ben-Avraham, and Dan Tchernov

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Differential Fmo3 gene expression in various liver injury models involving hepatic oxidative stress in mice, Swetha Rudraiah, Jamie E. Moscovitz, Ajay C. Donepudi, Sarah N. Campion, Angela L. Slitt, Lauren M. Aleksunes, and José E. Manautou

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Minimal role of eastern fence lizards in borrelia burgdorferi transmission in Central New Jersey Oak/Pine Woodlands, Eric L. Rulison, Kaetlyn T. Kerr, Megan C. Dyer, Seungeun Han, Russell L. Burke, Jean I. Tsao, and Howard S. Ginsberg

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Effect of Temperature on Feeding Period of Larval Blacklegged Ticks (Acari: Ixodidae) on Eastern Fence Lizards, Eric L. Rulison, Roger A. LeBrun, and Howard S. Ginsberg

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Glacial forcing of central Indonesian hydroclimate since 60,000 y B.P., James M. Russell, Hendrik Vogel, Bronwen L. Konecky, Satria Bijaksana, Yongsong Huang, Martin Melles, Nigel Wattrus, Kassandra Costa, and John W. King

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Are All Red Algal Parasites Cut from the Same Cloth?, Eric D. Salomaki and Christopher E. Lane

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A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes, Regina Salvat, Leonard Moise, Chris Bailey-Kellogg, and Karl E. Griswold

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A comparison of transport and position between the Gulf Stream east of Cape Hatteras and the Florida Current, A. Sanchez-Franks, C. N. Flagg, and T. Rossby

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Determination of in situ dissolved inorganic carbon concentration and alkalinity for marine sedimentary porewater, Justine Sauvage, Arthur J. Spivack, Richard W. Murray, and Steven D'Hondt

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Aqueous carbon monoxide cycling in a fjord-like estuary, Courtney E. Schmidt and Brian G. Heikes

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Notes on the marine algae of the Bermudas. 14. Five additions to the benthic flora, including a distinctive second new species of Crassitegula (Rhodophyta, Sebdeniales) from the western Atlantic Ocean, Craig W. Schneider, Thea R. Popolizio, and Christopher E. Lane

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The monospecific genus Meredithia (Kallymeniaceae, Gigartinales) is species rich and geographically widespread with species from temperate Atlantic, Pacific, and Indian Oceans, Craig W. Schneider, Gary W. Saunders, and Christopher E. Lane

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Intention and willingness to pay for green freight transportation: An empirical examination, Dara G. Schniederjans and Christopher M. Starkey

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A force sensing tool for disassembly operations, Paul Schumacher and Musa Jouaneh

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Robust and Dynamically Consistent Model Order Reduction for Nonlinear Dynamic Systems, David B. Segala and David Chelidze

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Metabolic suppression during protracted exposure to hypoxia in the jumbo squid, Dosidicus gigas, living in an oxygen minimum zone, Brad A. Seibel, N. Sören Häfker, Katja Trübenbach, Jing Zhang, Shannon N. Tessier, Hans-Otto Pörtner, Rui Rossa, and Kenneth B. Storey

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Comparison of Phenotypic Value Changes in Pure Lines of Bombyx mori (Lepidoptera: Bombycidae) During Consecutive Generations Following Initial Selection on Cocoon Weight, Alireza Seidavi and Marian R. Goldsmith

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Wondering + online inquiry = learning, Diane Carver Sekeres, Julie Coiro, Jill Castek, and Lizabeth A. Guzniczak

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Reduction reactions of carbonate solvents for lithium ion batteries, Daniel M. Seo, Dinesh Chalasani, Bharathy S. Parimalam, Rahul Kadam, Mengyun Nie, and Brett L. Lucht

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Financial Adaptation Among College Students: Helping Students Cope with Financial Strain, Joyce Serido, Soyeon Shim, Jing Jian Xiao, Chuanyi Tang, and Noel A. Card

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Cyclodextrin-promoted energy transfer for broadly applicable small-molecule detection, Nicole Serio, Chitapom Chanthalyma, Lindsey Prignano, and Mindy Levine

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Detection of Medium-Sized Polycyclic Aromatic Hydrocarbons via Fluorescence Energy Transfer, Nicole Serio, Lindsey Prignano, Sean Peters, and Mindy Levine

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The acute hormonal response to free weight and machine weight resistance exercise, Aaron A. Shaner, Jakob L. Vingren, Disa L. Hatfield, Ronald G. Budnar, Anthony A. Duplanty, and David W. Hill

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Instrumentation for cell capacitance measurements: Switching sinusoidal excitations for studying cell membrane transport, Julia Shannon, Joseph Cullen, Prashil Patel, Eugene Chabot, and Ying Sun

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Characterization of weakly cemented sands from geophysical logs, Ravi Sharma and Christopher Baxter

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Partial pathogen protection by tick-bite sensitization and epitope recognition in peptide-immunized HLA DR3 transgenic mice, Wendy M. C. Shattuck, Megan C. Dyer, Joe Desrosiers, Loren D. Fast, Frances E. Terry, William D. Martin, Leonard Moise, Anne S. De Groot, and Thomas N. Mather

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A Polymorphic Microdeletion in the RGS9 Gene Suppresses PTB Binding and Associates with Obesity, Chong Shen, Meenakshi Sharma, Daniel C. Reid, Pengtao Li, Jeremy Celver, Norhashimah Abu Seman, Jinfeng Chen, Senthil K. Vasan, Hairu Wang, Tianwei Gu, Ying Liu, Wan Nazaimoon Wan Mohamud, Hongbing Shen, Kerstin Brismar, William G. Fairbrother, Abraham Kovoor, and Harvest F. Gu

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Can knowledge be more accessible in a virtual network?: Collective dynamics of knowledge transfer in a virtual knowledge organization network, Seung Kyoon Shin and Woong Kook

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Cyclic Peptide-Capped Gold Nanoparticles for Enhanced siRNA Delivery, Amir Nasrolahi Shirazi, Karissa L. Paquin, Niall G. Howlett, Dindyal Mandal, and Keykavous Parang

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Testing demographic differences for alcohol use initiation among adolescents for the decisional balance and situational temptation prevention inventories, Marie A. Sillice, Andrea L. Paiva, Steven F. Babbin, Heather A. McGee, Joseph S. Rossi, Colleen A. Redding, Kathryn S. Meier, Karin Oatley, and Wayne F. Velicer

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Erratum: Iron-Catalyzed Arylation of Heterocycles via Directed C-H Bond Activation (Organic Letters (2014) 16:3 (868-871) DOI: 10.1021/ol403634b), John J. Sirois, Riley Davis, and Brenton Deboef

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Iron-Catalyzed Arylation of Heterocycles via Directed C–H Bond Activation, John J. Sirois, Riley Davis, and Brenton DeBoef

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Fruit removal rate depends on neighborhood fruit density, frugivore abundance, and spatial context, Adam D. Smith and Scott R. McWilliams

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What to do when stopping over: Behavioral decisions of a migrating songbird during stopover are dictated by initial change in their body condition and mediated by key environmental conditions, Adam D. Smith and Scott R. McWilliams

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Using Nocturnal Flight Calls to Assess the Fall Migration of Warblers and Sparrows Along a Coastal Ecological Barrier, Adam D. Smith, Peter W. C. Paton, and Scott R. McWilliams

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Parent cognitive-behavioral intervention for the treatment of childhood anxiety disorders: A pilot study, Allison M. Smith, Ellen C. Flannery-Schroeder, Kathleen S. Gorman, and Nathan Cook

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Fish trophic engineering: Ecological effects of the invasive ascidian Didemnum vexillum (Georges Bank, northwestern Atlantic), Brian E. Smith, Jeremy S. Collie, and Nicole L. Lengyel

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The inner workings of collaboration in marine ecosystem-based management: A social network analysis approach, Tiffany C. Smythe, Robert Thompson, and Carlos Garcia-Quijano

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Preliminary Evaluation of Near Infrared Spectroscopy as a Method to Detect Plasma Leakage in Children with Dengue Hemorrhagic Fever, Babs Soller, Anon Srikiatkachorn, Fengmei Zou, Alan Rothman, In-Kyu Yoon, Robert V. Gibbons, Siripen Kalayanarooj, Stephen J. Thomas, and Sharone Green

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Gas hydrate distribution and carbon sequestration through coupled microbial methanogenesis and silicate weathering in the Krishna-Godavari Basin, offshore India, Evan A. Solomon, Arthur J. Spivack, Miriam Kastner, Marta E. Torres, and Gretchen Robertson

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The Air-Sea Interface and Surface Stress Under Tropical Cyclones, Alexander V. Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, and Isaac Ginis

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Transcriptional dynamics of bile salt export pump during pregnancy: Mechanisms and implications in intrahepatic cholestasis of pregnancy, Xiulong Song, Alexander Vasilenko, Yuan Chen, Leila Valanejad, Ruchi Verma, Bingfang Yan, and Ruitang Deng

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Magnetic parameter variations in the Chaona loess/paleosol sequences in the central Chinese Loess Plateau, and their significance for the middle Pleistocene climate transition, Yougui Song, Xiaomin Fang, John W. King, Jijun Li, Ishikawa Naoto, and Zhisheng An

Use of ensemble based methods for oil spill risk assessment investigations, Malcolm L. Spaulding, Chris Galagan, Lisa McStay, Tatsu Isaji, David Stuebe, and Rebecca Green

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Predation-associated modulation of movement-based signals by a Bahamian lizard, David S. Steinberg, Jonathan B. Losos, Thomas W. Schoener, David A. Spiller, Jason J. Kolbe, and Manuel Leal

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Speaking Truth to Power: The Legacies of Rachel Carson, Karen F. Stein

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Measuring behaviors of individual adolescents during group-based substance abuse intervention, L. A.R. Stein, Mary Clair, Rosemarie A. Martin, Shayna Soenksen, Rebecca Lebeau, Damaris J. Rohsenow, Christopher W. Kahler, Warren Hurlbut, and Peter M. Monti

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Basaltic Volcaniclastics from the Challenger Deep Forearc Segment, Mariana Convergent Margin: Implications for Tectonics and Magmatism of the Southernmost Izu–Bonin–Mariana Arc, Robert J. Stern, Minghua Ren, Katherine A. Kelley, Yasuhiko Ohara, Fernando Martinez, and Sherman H. Bloomer

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Typification and taxonomy of Gyrosigma tenuissimum (W. Sm.) J.W. Griffith & Henfr., comparison with Gyrosigma coelophilum N. Okamoto & Nagumo and description of two new taxa: Gyrosigma tenuissimum var. gundulae var. nov. and Gyrosigma baculum sp. nov. (Pleurosigmataceae, Bacillariophyta), Frithjof A.S. Sterrenburg, Myriam D. De Haan, Wulf E. Herwig, and Paul E. Hargraves

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Spin Flip Loss in Magnetic Storage of Ultracold Neutrons, A. Steyerl, Charles Kaufman, S. S. Malik, A. M. Desai, and Gerhard Müller

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Calculation of geometric phases in electric dipole searches with trapped spin-1/2 particles based on direct solution of the Schrödinger equation, Albert Steyerl, Charles Kaufman, Gerhard Müller, Surendra S. Malik, A. M. Desai, and R. Golub

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Quantitative Factors Proposed to Influence the Prevalence of Canine Tick-Borne Disease Agents in the United States, Roger W. Stich, Byron L. Blagburn, Dwight D. Bowman, Christopher Carpenter, M. Roberto Cortinas, Sidney A. Ewing, Desmond Foley, Janet E. Foley, Holly Gaff, Graham J. Hickling, R. Ryan Lash, Susan E. Little, Catherine Lund, Robert Lund, Thomas N. Mather, Glen R. Needham, William L. Nicholson, Julia Sharp, Andrea Varela-Stokes, and Dongmei Wang

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Inconsistencies in terminology and definitions of organic soil materials, Mark H. Stolt and Jonathan Bakken

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Adult acclimation to combined temperature and pH stressors significantly enhances reproductive outcomes compared to short-term exposures, Coleen Suckling, Melody S. Clark, Joelle Richard, Simon A. Morley, Michael A.S. Thorne, Elizabeth M. Harper, and Lloyd S. Peck

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Energy-storage-based low-frequency oscillation damping control using particle swarm optimization and heuristic dynamic programming, Xianchao Sui, Yufei Tang, Haibo He, and Jinyu Wen

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Reproduction of Endangered Big-Headed Turtle, Platysternon megacephalum (Reptilia: Testudines: Platysternidae), Yik-Hei Sung, Billy C.H. Hau, and Nancy E. Karraker

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Cranberry (Vaccinium macrocarpon) oligosaccharides decrease biofilm formation by uropathogenic Escherichia coli, Jiadong Sun, Jannie P.J. Marais, Christina Khoo, Kerry L. LaPlante, Rebecca M. Vejborg, Michael Givskov, Tim Tolker-Nielsen, Navindra P. Seeram, and David C. Rowley

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Tumor-penetrating acetalated dextran nanoparticles capable of tandem delivery of agents for the treatment of lung cancer, Qihua Sun and Samantha A. Meenach

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Impact of Dominant Breaking Waves on Air–Sea Momentum Exchange and Boundary Layer Turbulence at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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A Multiple COTS Receiver GNSS Spoof Detector -- Extensions, Peter F. Swaszek and Richard J. Hartnett

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GNSS Spoof Detection Using Shipboard IMU Measurements, Peter F. Swaszek, Scott A. Pratz, Benjamin N. Arocho, Kelly C. Seals, and Richard J. Hartnett

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Helicobacter canis colonization in sheep: A zoonotic link, Alton G. Swennes, Michelle L. Turk, Elise M. Trowel, Cassandra Cullin, Zeli Shen, Jassia Pang, Katherine H. Petersson, Floyd E. Dewhirst, and James G. Fox

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Quantitative food habits of the bullnose ray, Myliobatis freminvillii, in Delaware Bay, John A. Szczepanski and David A. Bengtson

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Hybrid classification with partial models, Bo Tang, Quan Ding, Haibo He, and Steven Kay

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Reactive power control of grid-connected wind farm based on adaptive dynamic programming, Yufei Tang, Haibo He, Zhen Ni, Jinyu Wen, and Xianchao Sui

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Frequency control using on-line learning method for island smart grid with EVs and PVs, Yufei Tang, Jun Yang, Jun Yan, Zhili Zeng, and Haibo He

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Did a submarine landslide contribute to the 2011 Tohoku tsunami?, David A. Tappin, Stephan T. Grilli, Jeffrey C. Harris, Robert J. Geller, Timothy Masterlark, James T. Kirby, Fengyan Shi, Gangfeng Ma, K.K.S. Thingbaijam, and P. Martin Mai

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Mercury bioaccumulation in cartilaginous fishes from Southern New England coastal waters: Contamination from a trophic ecology and human health perspective, David L. Taylor, Nicholas J. Kutil, Anna J. Malek, and Jeremy S. Collie

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Flaviviruses: Dengue, Stephen J. Thomas, Timothy P. Endy, and Alan L. Rothman

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Flaviviruses (Dengue, Yellow Fever, Japanese Encephalitis, West Nile Encephalitis, St. Louis Encephalitis, Tick-Borne Encephalitis, Kyasanur Forest Disease, Alkhurma Hemorrhagic Fever, Zika), Stephen J. Thomas, Timothy P. Endy, Alan L. Rothman, and Alan D. Barrett

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Sea-level change considerations for marine civil works - COPRI committee update on best practices, Jean O. Toilliez, Todd J. Mitchell, and Austin Becker

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Baseline socio-demographic characteristics and self-reported diet and physical activity shifts among recent immigrants participating in the randomized controlled lifestyle intervention: "Live Well", Alison Tovar, Rebecca Boulos, Sarah Sliwa, Aviva Must, David M. Gute, Nesly Metayer, Raymond R. Hyatt, Kenneth Chui, Alex Pirie, Christina Kamis Luongo, and Christina Economos

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Distinct Activation Phenotype of a Highly Conserved Novel HLA-B57-Restricted Epitope during Dengue Virus Infection, Elizabeth Townsley, Marcia Woda, Stephen J. Thomas, Siripen Kalayanarooj, Robert V. Gibbons, Ananda Nisalak, Anon Srikiatkhachorn, Sharone Green, Henry A.F. Stephens, Alan L. Rothman, and Anuja Matthew

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Slow swimming, fast strikes: effects of feeding behavior on scaling of anaerobic metabolism in epipelagic squid, Lloyd A. Trueblood and Brad A. Seibel

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Body composition explains sex differential in physical performance among older adults, Lisa A. Tseng, Matthew J. Delmonico, Marjolein Visser, Robert M. Boudreau, Bret H. Goodpaster, Ann V. Schwartz, Eleanor M. Simonsick, Suzanne Satterfield, Tamara Harris, and Anne B. Newman

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THE INFLUENCE OF SALT MARSH FUCOID ALGAE (ECADS) ON SEDIMENT DYNAMICS OF NORTHWEST ATLANTIC MARSHES, M. C. Tyrrell, Carol S. Thornber, J. A. Burkhardt, and M. Congretel

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Demand for ecolabeled seafood in the Japanese market: A conjoint analysis of the impact of information and interaction with other labels, Hirotsugu Uchida, Yuko Onozaka, Tamaki Morita, and Shunsuke Managi

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Do Japanese consumers care about sustainable fisheries? Evidence from an auction of ecolabelled seafood, Hirotsugu Uchida, Cathy A. Roheim, Hiroki Wakamatsu, and Christopher M. Anderson

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An Anomalous Near-Bottom Cross-Shelf Intrusion of Slope Water on the Southern New England Continental Shelf, D. S. Ullman, D. L. Codiga, A. Pfeiffer-Herbert, and Christopher R. Kincaid

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Health Studies Program Newsletter for 2014, URI Health Studies Program

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An optimization approach to the pole-placement design of robust linear multivariable control systems, Richard J. Vaccaro

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Cigarette smoking as an expression of independence and freedom among inmates in a tobacco-free prison in the united states, Jacob J. Van den Berg, Beth Bock, Mary B. Roberts, Lynda A.R. Stein, Peter D. Friedmann, Stephen A. Martin, and Jennifer G. Clarke

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Henry Simons’s death, Robert Van Horn

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TDOA based direct positioning maximum likelihood estimator and the cramer-rao bound, Naresh Vankayalapati, Steven Kay, and Quan Ding

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Intraspecific variation in vertical habitat use by tiger sharks (Galeocerdo cuvier) in the western North Atlantic, Jeremy J. Vaudo, Bradley M. Wetherbee, Guy Harvey, Richard S. Nemeth, Choy Aming, Neil Burnie, Lucy A. Howey-Jordan, and Mahmood S. Shivji

Implication of theory of games on inventory control policies: Pricing strategies, inventory levels and re-manufacturing, Masoud Vaziri and Manbir Sodhi

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Tree diversity in cacao agroforests in San Alejandro, Peruvian Amazon, Hana Vebrova, Bohdan Lojka, Thomas P. Husband, Maria Elena Chuspe Zans, Patrick Van Damme, Alexandr Rollo, and Marie Kalousova

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Homeoviscous response of Clostridium pasteurianum to butanol toxicity during glycerol fermentation, Keerthi P. Venkataramanan, Yogi Kurniawan, Judy J. Boatman, Cassandra H. Haynes, Katherine A. Taconi, Lenore M. Martin, Geoffrey D. Bothun, and Carmen Scholz

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Understanding the pharmacological properties of a metabolic PET tracer in prostate cancer, Nerissa Therese Viola-Villegas, Sean D. Carlin, Ellen Ackerstaff, Kuntal K. Sevak, Vadim Divilov, Inna Serganova, Natalia Kruchevsky, Michael Anderson, Ronald G. Blasberg, Oleg A. Andreev, Donald M. Engelman, Jason A. Koutcher, Yana K. Reshetnyak, and Jason S. Lewis

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Reliability and lifetime modeling of wireless sensor nodes, Chaonan Wang, Liudong Xing, Vinod M. Vokkarane, and Yan Sun

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A phased-mission framework for communication reliability in WSN, Chaonan Wang, Liudong Xing, Vinod M. Vokkarane, and Yan Lindsay Sun

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Circulating microRNAs in Pancreatic Juice as Candidate Biomarkers of Pancreatic Cancer, Jin Wang, Massimo Raimondo, Sushovan Guha, Jinyun Chen, Lixia Diao, Xiaoqun Dong, Michael B. Wallace, Ann M. Killary, Marsha L. Frazier, Timothy A. Woodward, Jing Wang, and Subrata Sen

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Update of enterovirus 71 infection: Epidemiology, pathogenesis and vaccine, Shih Min Wang and Ching Chuan Liu