All URI faculty publications that are in DigitalCommons@URI are listed here. This includes journal article articles that were deposited under the URI Open Access Policy, as well as other articles that were deposited according to journal policies.

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Submissions from 2008

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Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis, Steven Q. Irvine, Vera C. Fonseca, Michael A. Zompa, and Rajee Antony

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Alternate Conceptions of Preservice Elementary Teachers: The Itakura Method, Aaron D. Isabelle and Cornelis de Groot

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Reduce, Reuse, Recycle: Revamping a Freshman Seminar Information Literacy Program, Amanda Izenstark and Mary C. MacDonald

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Fluorescence Probing of Aminofluorene-Induced Conformational Heterogeneity in DNA Duplexes, Nidhi Jain, Yana K. Reshetnyak, Lan Gao, M. Paul Chiarelli, and Bongsup P. Cho

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Transtheoretical Model-based multiple behavior intervention for weight management: Effectiveness on a population basis, Sara S. Johnson, Andrea L. Paiva, Carol O. Cummins, Janet L. Johnson, Sharon J. Dyment, Julie A. Wright, James O. Prochaska, Janice M. Prochaska, and Karen Sherman

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Glycogen and Maltose Utilization by Escherichia coli O157:H7 in the Mouse Intestine, Shari A. Jones, Mathias Jorgensen, Fatema Z. Chowdhury, Rosalie Rodgers, James Hartline, Mary P. Leatham, Carsten Struve, Karen A. Krogfelt, Paul S. Cohen, and Tyrrell Conway

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Sensitivity of infrared spectra to chemical functional groups, Kevin Judge, Chris W. Brown, and Lutz Hamel

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Sensitivity of Raman spectra to chemical functional groups, Kevin Judge, Chris W. Brown, and Lutz Hamel

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In Vitro and In Vivo Evidence for Lack of Endovascular Remodeling by Third Trimester Trophoblasts, S. Kalkunte, Z. Lai, N. Tewari, Clinton O. Chichester III, R. Romero, J. Padbury, and S. Sharma

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Interaction and Thermodynamics of Spinons in the XX Chain, Michael Karbach, Gerhard Müller, and Klaus Wiele

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RNAi-Mediated Gene Silencing in Tick Synganglia: A Proof of Concept Study, Shahid Karim, Bronwyn Kenny, Emily Troiano, and Thomas N. Mather

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Ed fagan and the ethics of causes: Who stole identity politics?, Valerie Karno

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Searching the Biological Literature, John L. Kelland

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Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae), Eunsoo Kim, Christopher E. Lane, Bruce A. Curtis, Catherine Kozera, Sharen Bowman, and John M. Archibald

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Pledges of empire: The Ara Pacis and the donations of Rome, Diana E.E. Kleiner and Bridget Buxton

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E-Commerce Patterns in South Asia: A Look Beyond Economics, Nir Kshetri and Nikhilesh Dholakia

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The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part II: Growing Seas, Tobias Kukulka and Tetsu Hara

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The Effect of Breaking Waves on a Coupled Model of Wind and Ocean Surface Waves. Part I: Mature Seas, Tobias Kukulka and Tetsu Hara

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Deep Sea Underwater Robotic Exploration in the Ice-Covered Arctic Ocean With AUVs, Clayton Kunz, Chris Murphy, Richard Camilli, Hanumant Singh, John Bailey, Ryan M. Eustice, Chris Roman, Michael Jakuba, Claire Willis, Taichi Sato, Ko-ichi Nakamura, and Robert A. Sohn

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Is a previous unplanned pregnancy a risk factor for a subsequent unplanned pregnancy?, Lindsay M. Kuroki, Jenifer E. Allsworth, Colleen A. Redding, Jeffrey D. Blume, and Jeffrey F. Peipert

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Remasculinizing American white guys in/through new millennium American sport films, Kyle W. Kusz

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The Growth and Tumor Suppressors NORE1A and RASSF1A Are Targets for Calpain-Mediated Proteolysis, Sergey Kuznetsov and Andrei V. Khokhlatchev

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Stages of Change – Continuous Measure (URICA‐E2): psychometrics of a Norwegian version, Anners Lerdal, Britt Moe, Elin Digre, Thomas Harding, Frode Kristensen, Ellen K. Grov, Linda N. Bakken, Marthe L. Eklund, Ireen Ruud, and Joseph S. Rossi

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Refinement of reduced-models for dynamic systems, Huajun Li, Min Zhang, and Sau-Lon James Hu

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Identification and Characterization of a Repeat-in-Toxin Gene Cluster in Vibrio anguillarum, Ling Li, Jessica L. Rock, and David R. Nelson

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Rapid activation of ERK1/2 and AKT in human breast cancer cells by cadmium, Zhiwei Liu, Xinyuan Yu, and Zahir A. Shaikh

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Statistically Interacting Quasiparticles in Ising Chains, Ping Lu, Jared Vanasse, Christopher Piecuch, Michael Karbach, and Gerhard Müller

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Gonadal Cycle of Northern Quahogs, Mercenaria mercenaria (Linne, 1758), from Fished and Non-fished Subpopulations in Narragansett Bay, Dora C. Marroquin-Mora and Michael A. Rice

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The "limited capital-labor accord": May it rest in peace?, Richard Mcintyre and Michael Hillard

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A Salmonella enterica Serovar Typhimurium Succinate Dehydrogenase/Fumarate Reductase Double Mutant Is Avirulent and Immunogenic in BALB/c Mice, Regino Mercado-Lubo, Eric J. Gauger, Mary P. Leatham, Tyrrell Conway, and Paul S. Cohen

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Impact of the Reduced Drag Coefficient on Ocean Wave Modeling under Hurricane Conditions, Il-Ju Moon, Isaac Ginis, and Tetsu Hara

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Fluid Dynamics of Feeding Behaviour in White-Spotted Bamboo Sharks, Sandra Nauwelaerts, Cheryl Wilga, George V. Lauder, and Christopher P. Sanford

Advanced sensor development for propulsion health monitoring, Craig Neslen, Vince Wnuk, Otto Gregory, Rod Draney, and Mauricio Da Cunha

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Sargassum fusiforme Fraction is a Potent and Specific Inhibitor of HIV-1 Fusion and Reverse Transcriptase, Elena E. Paskaleva, Xudong Lin, Karen Duus, James J. McSharry, Jean-Claude L. Veille, Carol S. Thornber, Yanze Liu, David Yu-Wei Lee, and Mario Canki

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Combining Existing Monitoring Sites with a Probability Survey Design-Examples from U.S. EPA’s National Coastal Assessment, John F. Paul, Henry A. Walker, Walter Galloway, Gerald Pesch, Donald Cobb, Charles J. Strobel, J. Kevin Summers, Michael Charpentier, and James Heltshe

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REVISITING THE CLASSICS: CONSIDERING NONCONSUMPTIVE EFFECTS IN TEXTBOOK EXAMPLES OF PREDATOR–PREY INTERACTIONS, Barbara L. Peckarsky, Peter A. Abrams, Daniel I. Bolnick, Lawrence M. Dill, Jonathan H. Grabowski, Barney Luttberg, John L. Orrock, Scott D. Peacor, Evan L. Preisser, Oswald J. Schmitz, and Geoffrey C. Trussell

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Tailored intervention to increase dual-contraceptive method use: a randomized trial to reduce unintended pregnancies and sexually transmitted infections, Jeffrey F. Peipert, Colleen A. Redding, Jeffrey D. Blume, Jenifer E. Allsworth, Kristen A. Matteson, Faye Lozowski, Kenneth H. Mayer, Patricia J. Morokoff, and Joseph S. Rossi

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Oxidant-controlled regioselectivity in the oxidative arylation of N-acetylindoles, Shathaverdhan Potavathri, Ashley S. Dumas, Timothy A. Dwight, Gregory R. Naumiec, Jeffrey M. Hammann, and Brenton DeBoef

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The Many Faces of Fear: Comparing the Pathways and Impacts of Nonconsumptive Predator Effects on Prey Populations, Evan L. Preisser and Daniel I. Bolnick

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EXPLOITATIVE COMPETITION BETWEEN INVASIVE HERBIVORES BENEFITS A NATIVE HOST PLANT, Evan L. Preisser and Joseph S. Elkinton

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Initial efficacy of MI, TTM tailoring and HRI’s with multiple behaviors for employee health promotion, James O. Prochaska, Susan Butterworth, Colleen A. Redding, Verna Burden, Nancy Perrin, Michael Leo, Marna Flaherty-Robb, and Janice M. Prochaska

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Methods of quantifying change in multiple risk factor interventions, Judith J. Prochaska, Wayne F. Velicer, Claudio R. Nigg, and James O. Prochaska

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Joint modeling of sensitivity and specificity, Gavino Puggioni, Alan E. Gelfand, and Joann G. Elmore

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DEC1, a Basic Helix-Loop-Helix Transcription Factor and a Novel Target Gene of the p53 Family, Mediates p53-dependent Premature Senescence, Yingjuan Qian, Jin Zhang, Bingfang Yan, and Xinbin Chen

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METAPOPULATION DYNAMICS OVERRIDE LOCAL LIMITS ON LONG‐TERM PARASITE PERSISTENCE, Karthik Ram, Evan L. Preisser, Daniel S. Gruner, and Donald R. Strong

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E-Journal Usage Statistics in Collection Management Decisions: A Literature Review, Andrée J. Rathemacher

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Perspectives on Using E-Journal Usage Statistics in a Serials Cancellation Project, Andrée J. Rathemacher and Michael C. Vocino

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Saving camels from straws: how propagule pressure-based prevention policies can reduce the risk of biological invasion, Jamie K. Reaser, Laura A. Meyerson, and Betsy Von Holle

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Numerical Quantification of Perkinsus marinus in the American Oyster Crassostrea virginica (Gmelin, 1791) (Mollusca: Bivalvia) by Modern Stereology, Antonio Remacha-Trivino, Doranne Borsay-Horowitz, Christopher Dungan, Ximo Gual-Arnau, Javier Gomez-Leon, Luisa Villamil, and Marta Gomez-Chiarri

Routing-aware coloring in TDMA for time-critical data aggregation in wireless sensor networks, Tiegeng Ren, Timothy Henry, Lisa DiPippo, Kevin L. Bryan, and Fay Wolfe Victor

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HOx chemistry during INTEX‐A 2004: Observation, model calculation, and comparison with previous studies, Xinrong Ren, Jennifer R. Olson, James H. Crawford, William H. Brune, Jingqiu Mao, Robert B. Long, Zhong Chen, Gao Chen, Melody A. Avery, Glen W. Sachse, John D. Barrick, Glenn S. Diskin, L. Greg Huey, Alan Fried, Ronald C. Cohen, Brian Heikes, Paul O. Wennberg, Hanwant B. Singh, Donald R. Blake, and Richard E. Shetter

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Energetics of Peptide (pHLIP) Binding to and Folding Across a Lipid Bilayer Membrane, Yana K. Reshetnyak, Oleg A. Andreev, Michael Segala, Vladislav S. Markin, and Donald M. Engelman

Bioleaching of metals from electronic waste, Mercedes A. Rivero-Hudec, Manbir Sodhi, and Diana Goglia-Arora

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Comparative Analysis of Distribution and Abundance of West Nile and Eastern Equine Encephalomyelitis Virus Vectors in Suffolk County, New York, Using Human Population Density and Land Use/Cover Data, I. Rochlin, K. Harding, Howard S. Ginsberg, and S. R. Campbell

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Raiding saint peter: Empty sees, violence, and the initiation of the great Western Schism (1378), Joëlle Rollo-Koster

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Synergistic effects of climate-related variables suggest future physiological impairment in a top oceanic predator, Rui Rosa and Brad A. Seibel

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Randomized Clinical Trial of Motivational Enhancement of Substance Use Treatment Among Incarcerated Adolescents: Post-Release Condom Non-Use, Cynthia Rosengard, L.A.R. Stein, Nancy P. Barnett, Peter M. Monti, Charles Golembeske, Rebecca Lebeau-Craven, and Robert Miranda

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A Constant Entropy Increase Model for the Selection of Parallel Tempering Ensembles, Dubravko Sabo, Markus Meuwly, David L. Freeman, and J. D. Doll

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FROM INDIVIDUALS TO ECOSYSTEM FUNCTION: TOWARD AN INTEGRATION OF EVOLUTIONARY AND ECOSYSTEM ECOLOGY, Oswald J. Schmitz, Jonathan H. Garbowski, Barbara L. Peckarsky, Evan L. Preisser, Geoffrey C. Trussell, and James R. Vonesh

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Component-Dependent Fréchet Sensitivity Kernels and Utility of Three-Component Seismic Records, Yang Shen, Zhigang Zhang, and Li Zhao

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Dexamethasone suppresses the expression of multiple rat carboxylesterases through transcriptional repression: Evidence for an involvement of the glucocorticoid receptor, Deshi Shi, Jian Yang, Dongfang Yang, and Bingfang Yan

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Liver receptor homolog 1 transcriptionally regulates human bile salt export pump expression, Xiulong Song, Rajani Kaimal, Bingfang Yan, and Ruitang Deng

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Development of Methods for the Genetic Manipulation of Flavobacterium columnare, Andrew M. Staroscik, David W. Hunnicutt, Kate E. Archibald, and David R. Nelson

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Quantum Integrability and Nonintegrability in the Spin-boson Model, Vyacheslav V. Stepanov, Gerhard Müller, and Joachim Stolze

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Growth Trajectories of Preterm Infants: Birth to 12 Years, Mary C. Sullivan, Margaret M. McGrath, Katheleen Hawes, and Barry M. Lester

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Integrable motion of a vortex dipole in an axisymmetric flow, G. G. Suyrin, X. Perrot, and X. Carton

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Ecosystem Services beyond Valuation, Regulation, and Philanthropy: Integrating Consumer Values into the Economy, Stephen K. Swallow, Elizabeth C. Smith, Emi Uchida, and Christopher M. Anderson

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The Papua New Guinea tsunami of 17 July 1998: anatomy of a catastrophic event, D. R. Tappin, P. Watts, and Stephan T. Grilli

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The effects of basal resistance and hydroplaning on the initial kinematics of seismically induced tsunamigenic landslides, Oliver Denzil S. Taylor, Aaron S. Bradshaw, Christopher D.P. Baxter, and Stephan T. Grilli

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Identification and Characterization of Epp, the Secreted Processing Protease for the Vibrio anguillarum EmpA Metalloprotease, Maureen Varina, Steven M. Denkin, Andrew M. Staroscik, and David R. Nelson

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Theory Testing Using Quantitative Predictions of Effect Size, Wayne F. Velicer, Geoff Cumming, Joseph L. Fava, Joseph S. Rossi, James O. Prochaska, and Janet Johnson

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Francis Bearse Takes a Shower or I Miss My Ma, Michael C. Vocino

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Framing, Symmetry, and Contrast in Edmond de Goncourt's Aesthetic Interior, Pamela J. Warner

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Evolutionary divergence in the feeding mechanism of fishes, Cheryl A.D. Wilga

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Suction Generation in White-Spotted Bamboo Sharks Chiloscyllium Plagiosum, Cheryl D. Wilga and Christopher P. Sanford

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A comparison between warm-water fish assemblages of Narragansett Bay and those of Long Island Sound waters, Abby Jane M. Wood, Jeremy S. Collie, and Jonathan A. Hare

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Alzheimer's Disease (AD)-Like Pathology in Aged Monkeys after Infantile Exposure to Environmental Metal Lead (Pb): Evidence for a Developmental Origin and Environmental Link for AD, Jinfang Wu, Md. Riyaz Basha, Brian Brock, David P. Cox, Fernando Cardozo-Pelaez, Christopher A. McPherson, Jean Harry, Deborah C. Rise, Brian Maloney, Demaio Chen, Debomoy K. Lahiri, and Nasser H. Zawia

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Experimental investigations of spontaneous bimaterial interfacial fractures, Kaiwen Xia, Carl-Ernst Rousseau, and Ares Rosakis

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Completing Debt Management Plans in Credit Counseling: An Application of the Theory of Planned Behavior, Jing Jian Xiao and Jiayun Wu

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Improving the Ocean Initialization of Coupled Hurricane–Ocean Models Using Feature-Based Data Assimilation, Richard M. Yablonsky and Isaac Ginis

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A BAC-Based Integrated Linkage Map of the Silkworm Bombyx mori, Kimiko Yamamoto, Junko Nohata, Keiko Kadono-Okuda, Junko Narukawa, Motoe Sasanuma, Shun-ichi Sasanuma, Hiroshi Minami, Michihiko Shimomura, Yoshitaka Suetsugu, Yutaka Banno, Kazutoyo Osoegawa, Pieter J. de Jong, Marian R. Goldsmith, and Kazuei Mita

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Intercultural Sensitivity and Conflict Management Styles in Cross-Cultural Organizational Situations, Tong Yu and Guo-Ming Chen

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Mitochondrial cob and cox1 Genes and Editing of the Corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with Special Reference to the Phylogenetic Position of the Genus Dinophysis, Huan Zhang, Debashish Bhattacharya, Lucie Maranda, and Senjie Lin

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Effects of polymer modification on properties and microstructures of model asphalt systems, Liqun Zhang and Michael L. Greenfield

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Comment on “Current system east of the Ryukyu Islands” by A. Nagano et al., Xiao-Hua Zhu, Jae-Hun Park, Mark Wimbush, and Cheng-Hao Yang

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Bilayer Interactions of pHLIP, a Peptide that Can Deliver Drugs and Target Tumors, Manuela Zoonens, Yana K. Reshetnyak, and Donald M. Engelman

Submissions from 2007

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Quantum Size Effect and Biased Diffusion of Gravitationally Bound Neutrons in a Rough Waveguide, R. Adhikari, Y. Cheng, A. E. Meyerovich, and V. V. Nesvizhevsky

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The Practice of Problem Based Learning, José A. Amador, Libby Miles, and Calvin B. Peters

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Mechanism and Uses of a Membrane Peptide that Targets Tumors and Other Acidic Tissues In Vivo, Oleg A. Andreev, Alison D. Dupuy, Michael Segala, Srikanth Sandugu, David A. Serra, Clinton O. Chichester, Donald M. Engelman, and Yana K. Reshetnyak

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l-Fucose Stimulates Utilization of d-Ribose by Escherichia coli MG1655 ΔfucAO and E. coli Nissle 1917 ΔfucAO Mutants in the Mouse Intestine and in M9 Minimal Medium, Steven M. Autieri, Jeremy J. Lins, Mary P. Leatham, David C. Laux, Tyrrell Conway, and Paul S. Cohen

Undergraduate chemical engineering: Biology track, Stanley M. Barnett

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The Operational GFDL Coupled Hurricane–Ocean Prediction System and a Summary of Its Performance, Morris A. Bender, Isaac Ginis, Robert Tuleya, Biju Thomas, and Timothy Marchok

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Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event, Rasha Bhandari, Adolfo Saiardi, Yousef Ahmadibeni, Adele M. Snowman, Adam C. Resnick, Troels Z. Kristiansen, Henrik Molina, Akhilesh Pandey, J. Kent Werner Jr., Krishna R. Juluri, Yong Xu, Glenn D. Prestwich, Keykavous Parang, and Solomon H. Snyder

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Interspecific comparison of hydrodynamic performance and structural properties among intertidal macroalgae, Michael L. Boller and Emily Carrington

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Issues in urban hydrology: The emerging field of urban contaminant hydrology, T. B. Boving and J. E. McCray

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Remediation with cyclodextrin: Recovery of the remedial agent by membrane filtration, Thomas B. Boving, Stanley M. Barnett, Gustavo Perez, William J. Blanford, and John E. McCray

Runoff treatment with aspen wood, Thomas B. Boving, Joshua Klement, Bethany Thienel, and Beverly Johnson

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Attenuation of polycyclic aromatic hydrocarbons from urban stormwater runoff by wood filters, Thomas B. Boving and Kevin Neary

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A case study of construction-related ground movements in providence silt, Aaron S. S. Bradshaw, Heather J. Miller, and Christopher D.P. Baxter

Sample preparation of silts for liquefaction testing, A. S. Bradshaw and C. D.P. Baxter