Publications from the faculty and research scientists of the Graduate School of Oceanography.

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Manuscripts from 2019

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Uptake of hydrophobic organic compounds, including OCPs and PBDEs, and perfluoroalkyl acids (PFAAs) in fish and blue crabs of the lower Passaic River (NJ, USA), Mohammed A. Khairy, Gregory O. Noonan, and Rainer Lohmann

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Aryl hydrocarbon receptor-mediated activity of gas-phase ambient air derived from passive sampling and an in vitro bioassay, Carrie A. McDonough, Diana G. Franks, Mark E. Hahn, and Rainer Lohmann

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Evidence of Environmental Changes Caused by Chinese Island-Building, Leland Smith, Peter C. Cornillon, Don Rudnickas, and Colleen B. Mouw

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Long-Term Variations in the Pixel-to-Pixel Variability of NOAA AVHRR SST Fields from 1982 to 2015, Fan Wu, Peter C. Cornillon, Lei Guan, and Katherine Kilpatrick

Manuscripts from 2018

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Determining the AMSR-E SST Footprint from Co-located MODIS SSTs, Brahim Boussidi, Peter Cornillon, Gavino Puggioni, and Chelle Gentemann

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Carbon and Nitrogen Isoscapes in West Antarctica Reflect Oceanographic Transitions, Emily K. Brault, Paul L. Koch, Kelton W. McMahon, Kyle H. Broach, Aaron P. Rosenfield, Wilson Sauthoff, Valerie J. Loeb, Kevin R. Arrigo, and Walker O. Smith Jr.

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Sensitivity of Offshore Tropical Cyclone Wave Simulations to Spatial Resolution in Wave Models, Xuanyu Chen, Isaac Ginis, and Tetsu Hara

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Rapid coastal deoxygenation due to ocean circulation shift in the northwest Atlantic, Mariona Claret, Eric D. Galbraith, Jaime B. Palter, Daniele Bianchi, Katja Fennel, Denis Gilbert, and John P. Dunne

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Gulf Stream rings may rival atmospheric iron supply to the North Atlantic subtropical gyre, Tim M. Conway, Jaime B. Palter, and Gregory F. de Souza

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Field‐testing polyethylene passive samplers for the detection of neutral polyfluorinated alkyl substances in air and water, Erik Dixon-Anderson and Rainer Lohmann

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Radiolytic H2 Production in Martian Environments, Mary Dzaugis, Arthur J. Spivack, and Steven D’Hondt

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Characterizing CDOM Spectral Variability Across Diverse Regions and Spectral Ranges, Brice K. Grunert, Colleen B. Mouw, and Audrey B. Ciochetto

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An Ion-Neutral Model to Investigate Chemical Ionization Mass Spectrometry Analysis of Atmospheric Molecules – Application to a Mixed Reagent Ion System for Hydroperoxides and Organic Acids, Brian G. Heikes, Victoria Treadaway, Ashley S. McNeill, Indira K. C. Silwal, and Daniel W. O'Sullivan

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GROWTH CHARACTERISTICS OF NEWLY ISOLATED INDONESIAN MICROALGAE UNDER DIFFERENT SALINITY, Wa Iba, Michael A. Rice, Lucie Maranda, and Gary H. Wikfors

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Advancing the use of passive sampling in risk assessment and management of contaminated sediments: Results of an international passive sampling inter-laboratory comparison, Michael T. O. Jonker, Stephan A. van der Heijden, Dave Adelman, Jennifer N. Apell, Robert M. Burgess, Yongju Choi, Loretta A. Fernandez, Geanna M. Flavetta, Upal Ghosh, Philip M. Gschwend, Sarah E. Hale, Mehregan Jalalizadeh, Mohammed Khairy, Mark A. Lampi, Wenjian Lao, Rainer Lohmann, Michael J. Lydy, Keith A. Maruya, Samuel A. Nutile, Amy M. P. Oen, Magdalena I. Rakowska, Danny Reible, Tatsiana P. Rusina, Foppe Smedes, and Yanwen Wu

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Organophosphate Flame Retardants in the Indoor and Outdoor Dust and Gas-Phase of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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Selected Organohalogenated Flame Retardants in Egyptian Indoor and Outdoor Environments: Levels, Sources and Implications for Human Exposure, Mohammed A. Khairy and Rainer Lohmann

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Three‐Dimensional Passive‐Source Reverse‐Time Migration of Converted Waves: The Method, Jiahang Li, Yang Shen, and Wei Zhang

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Evidence of an Active Volcanic Heat Source beneath the Pine Island Glacier, Brice Loose, Alberto C. Naveira Garabato, Peter Schlosser, William J. Jenkins, David Vaughan, and Karen J. Heywood

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Time trends and trophic transfer of polybrominated diphenylethers (PBDEs) in Antarctic biota, Erin Markham, Emily K. Brault, Mohammed Khairy, Anna Robuck, Michael E. Goebel, Mark G. Cantwell, Rebecca M. Dickhut, and Rainer Lohmann

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Time Trends of Polybrominated Diphenyl Ethers (PBDEs) in Antarctic Biota, Erin Markham, Emily K. Brault, Mohammed Khairy, Anna R. Robuck, Michael E. Goebel, Mark G. Cantwell, Rebecca M. Dickhut, and Rainer Lohmann

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Dissolved Organophosphate Esters and Polybrominated Diphenyl Ethers in Remote Marine Environments: Arctic Surface Water Distributions and Net Transport Through Fram Strait, Carrie A. McDonough, Amila O. De Silva, Caoxin Sun, Ana Cabrerizo, David Adelman, Thomas Soltwedel, Eduard Bauerfeind, Derek C. G. Muir, and Rainer Lohmann

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Calibrating amino acid δ13C and δ15N offsets between polyp and protein skeleton to develop proteinaceous deep-sea corals as paleoceanographic archives., Kelton W. McMahon, Branwen Williams, Thomas P. Guilderson, Danielle S. Glynn, and Matthew D. McCarthy

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Herbivorous Protist Growth and Grazing Rates at In Situ and Artificially Elevated Temperatures during an Arctic Phytoplankton Spring Bloom, Susanne Menden-Deuer, Caitlyn Lawrence, and Guyantonia Franze

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The Theory of Games and Microbe Ecology, Susanne Menden-Deuer and Julie Rowlett

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Climate, ocean circulation, and sea level changes under stabilization and overshoot pathways to 1.5 K warming, Jaime B. Palter, Thomas L. Frölicher, David Paynter, and Jasmin G. John

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Climate, Ocean Circulation, and Sea Level Changes under Stabilization and Overshoot Pathways to 1.5 K Warming, Jaime B. Palter, Thomas L. Frölicher, David Paynter, and Jasmin G. John

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The Sensitivity of Future Ocean Oxygen to Changes in Ocean Circulation, Jaime B. Palter and David S. Trossman

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Surface currents from hourly variations of suspended particulate matter from Geostationary Ocean Color Imager data, Kyung-Ae Park, Min-Sun Lee, Ji-Eun Park, David Ullman, Peter C. Cornillon, and Young-Je Park

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Minimal Influence of Extracellular DNA on Molecular Surveys of Marine Sedimentary Communities, Gustavo A. Ramírez, Steffen L. Jørgensen, Rui Zhao, and Steven D’Hondt

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Influence of Commercial DNA Extraction Kit Choice on Prokaryotic Community Metrics in Marine Sediment, Gustavo Ramirez, Dennis Graham, and Steven D’Hondt

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A New Biological Proxy for Deep-Sea Paleo-Oxygen: Pores of Epifaunal Benthic Foraminifera, Anthony E. Rathburn, Jake Willingham, Wiebke Ziebis, Ashley M. Burkett, and Bruce H. Corliss

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Concentrations, Trends, and Air–Water Exchange of PCBs and Organochlorine Pesticides Derived from Passive Samplers in Lake Superior in 2011, Zoe Ruge, Derek Muir, Paul Helm, and Rainer Lohmann

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Real-Time Chronological Hazard Impact Modeling, Peter Stempel, Isaac Ginis, David Ullman, Austin Becker, and Robert Witkop

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Real-Time Chronological Hazard Impact Modeling, Peter Stempel, Isaac Ginis, David S. Ullman, Austin Becker, and Robert Witkop

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Measurement of Formic Acid, Acetic Acid and Hydroxyacetaldehyde, Hydrogen Peroxide, and Methyl Peroxide in Air by Chemical Ionization Mass Spectrometry: Airborne Method, Victoria Treadaway, Brian G. Heike, Ashley S. McNeill, Indira K. C. Silwal, and Daniel W. O'Sullivan

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Methane-Oxidizing Seawater Microbial Communities from an Arctic Shelf, C. Uhlig, J. B. Kirkpatrick, Steven L. D'Hondt, and Brice Loose

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Concentrations of Multiple Phytoplankton Pigments in the Global Oceans Obtained from Satellite Ocean Color Measurements with MERIS, Guoqing Wang, Zhongping Lee, and Colleen B. Mouw

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Impact of skeletal heterogeneity and treatment method on interpretation of environmental variability from the proteinaceous skeletons of deep-sea gorgonian octocorals, Branwen Williams, Kelton McMahon, Sarah Barnes, Devyn Parks, Ella Kim, Tanja Srebotnjak, and Peter Etnoyer

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Ocean Deoxygenation and Zooplankton: Very Small Oxygen Differences Matter, Karen F. Wishner, Brad A. Seibel, Christopher Roman, C. Deutsch, Dawn Outram, C. T. Shaw, M. A. Birk, K. A. S. Mislan, T. J. Adams, D. Moore, and S. Riley

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Roles of the Ocean Mesoscale in the Horizontal Supply of Mass, Heat, Carbon, and Nutrients to the Northern Hemisphere Subtropical Gyres, Ayako Yamamoto, Jaime B. Palter, Carolina O. Dufour, Stephen M. Griffies, Daniele Bianchi, Mariona Claret, John P. Dunne, Ivy Frenger, and Eric D. Galbraith

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Land-Use-Based Sources and Trends of Dissolved pPBDEs and PAHs in an Urbanized Watershed Using Assive Polyethylene Samplers, Wenlu Zhao, Minggang Cai, Dave Adelman, Mohammed Khairy, Pete August, and Rainer Lohmann

Manuscripts from 2017

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Nonbreaking wave‐induced mixing in upper ocean during tropical cyclones using coupled hurricane‐ocean‐wave modeling, S. Aijaz, M. Ghantous, A V. Babanin, Isaac Ginis, B. Thomas, and G. Wake

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Higher measured than modeled ozone production at increased NOx levels in the Colorado Front Range, Bianca C. Baier, William H. Brune, David O. Miller, Donald Blake, Russell Long, Armin Wisthaler, Christopher Cantrell, Alan Fried, Brian G. Heikes, Steve Brown, Erin McDuffie, Frank Flocke, Eric Apel, Lisa Kaser, and Andrew Weinheimer

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Numerical investigation of the Arctic ice–ocean boundary layer and implications for air–sea gas fluxes, Arash Bigdeli, Brice Loose, An T. Nguyen, and Sylvia T. Cole

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Exploration of the Southern California Borderland, Marie-Helene Cormier, Katherine L. C. Bell, Stephanie M. Sharuga, Chris Castillo, James Conrad, Diva Amon, Mark Legg, Michael L. Brennan, Kelsey Barnhill, Lawrence L. Lovell, Ashley Marrazino, Simon L. Klemperer, and Renato Kane

A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation, Keith Dufault-Thompson, Huahua Jian, Ruxue Cheng, Jiefu Li, Fengping Wang, and Ying Zhang

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A Miniature Acoustic Device for Tracking Small Marine Animals or Submerged Drifters, Godi Fischer, Thomas Rossby, and Daniel Moonan

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Seismic evidence for a possible deep crustal hot zone beneath Southwest Washington, Ashton F. Flinder and Yang Shen

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Eddy Heat Flux Across the Antarctic Circumpolar Current Estimated from Sea Surface Height Standard Deviation, Annie Foppert, Kathleen A. Donohue, D. Randolph Watts, and Karen Tracey

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The Florence Statement on Triclosan and Triclocarban, Rolf U. Halden, Avery E. Lindeman, Allison E. Aiello, David Andrews, William A. Arnold, Patricia Fair, Rebecca E. Fuoco, Laura A. Geer, Paula I. Johnson, Rainer Lohmann, Kristopher McNeill, Victoria P. Sacks, Ted Schettler, Roland Weber, R. Thomas Zoeller, and Arlene Blum

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Global analysis of depletion and recovery of seabed biota after bottom trawling disturbance, Jan Geert Hiddink, Simon Jennings, Marija Sciberras, Claire L. Szostek, Kathryn M. Hughes, Nick Ellis, Adriaan D. Rijnsdorp, Robert A. McConnaughey, Tessa Mazor, Ray Hilborn, Jeremy S. Collie, C. Roland Pitcher, Ricardo O. Amoroso, Ana M. Parma, Petri Surronen, and Michel J. Kaiser

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Using Polyethylene Passive Samplers to Study the Partitioning and Fluxes of PBDEs in an Urban River, Mohammed A. Khairy and Rainer Lohmann

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Heterogeneity in mantle carbon content from CO2-undersaturated basalts, M. Le Voyer, Katherine A. Kelley, and E. H. Hauri

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A peculiar lens-shaped structure observed in the South China Sea, Hongyang Lin, Jianyu Hu, Zhiyu Liu, Igor M. Belkin, Zhenyu Sun, and Jia Zhu

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Microplastics are not important for the cycling and bioaccumulation of organic pollutants in the oceans – but should microplastics be considered POPs themselves?, Rainer Lohmann

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Aquatic Global Passive Sampling (AQUA-GAPS) Revisited – First Steps towards a Network of Networks for Organic Contaminants in the Aquatic Environment, Rainer Lohmann, Derek Muir, Eddy Y. Zeng, Lian-Jun Bao, Ian J. Allan, Kenneth Arinaitwe, Kees Booij, Paul Helm, Sarit Kaserzon, Jochen F. Mueller, Yasukuki Shibata, Foppe Smedes, Manolis Tsapakis, Charles S. Wong, and Jing You

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How well does wind speed predict air‐sea gas transfer in the sea ice zone? A synthesis of radon deficit profiles in the upper water column of the Arctic Ocean, Brice Loose, Roger P. Kelly, A. Bigdeli, W. Williams, M. Rutgers van der Loeff, and S. B. Moran

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Organophosphate Ester Flame Retardants and Plasticizers in ocean sediments from the North Pacific to the Arctic Ocean, Yuxin Ma, Zhiyong Xie, Rainer Lohmann, Wenying Mi, and Guoping Gao

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Expanding understanding of optical variability in Lake Superior with a 4-year dataset, Colleen B. Mouw and Audrey B. Ciochetto

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Advances in the application of amino acid nitrogen isotopic analysis in ecological and biogeochemical studies, Naohiko Ohkouchi, Yoshito Chikaraishi, Hilary Close, Brian Fry, Thomas Larsen, Daniel J. Madigan, Matthew D. McCarthy, Kelton McMahon, Toshi Nagata, Yuichi I. Naito, Nanako O. Ogawa, Brian N. Popp, Shawn Steffan, Yoshinori Takano, Ichiro Tayasu, Alex S. J. Wyatt, Yasuhiko T. Yamaguchi, and Yusuke Yokoyama

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Nautilus Sample 2016: New Techniques and Partnerships, Nicole Raineault, Jeffrey Marlow, Meredith Everett, Peter Etnoyer, Marie-Helene Cormier, Vanessa Knutson, and Gonzalo Giribet

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Growth of the northeastern margin of the Tibetan Plateau by squeezing up of the crust at the boundaries, Jianyu Shi, Danian Shi, Yang Shen, Wenjin Shao, Guangqi Xue, Heping Su, and Yang Song

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Is the State of the Air-Sea Interface a Factor in Rapid Intensification and Rapid Decline of Tropical Cyclones?, Alexander V. Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, and Isaac Ginis

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Spatial and Temporal Variability in Macroalgal Blooms 1 in a Eutrophied Coastal Estuary, Carol S. Thornber, Michele Guidone, Christopher Deacutis, Lindsay Green, Christine N. Ramsay, and Melissa Palmisciano

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Multi-Spectral Remote Sensing of Phytoplankton Pigment Absorption Properties in Cyanobacteria Bloom Waters: A Regional Example in the Western Basin of Lake Erie, Guoqing Wang, Zhongping Lee, and Colleen Mouw

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Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow, Kerry A. Whittaker and Tatiana A. Rynearson

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Determining the Pixel-to-Pixel Uncertainty in Satellite-Derived SST Fields, Fan Wu, P. C. Cornillon, Brahim Boussidi, and Lei Guan

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Vertical Profiles, Sources and Transport of PFASs in the Arctic Ocean, Leo W. Y. Yeung, Clifton Dassuncao, Scott Mabury, Elsie M. Sunderland, Xianming Zhang, and Rainer Lohmann

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North Atlantic Deep Water formation inhibits high Arctic contamination by continental perfluorooctane sulfonate discharges, Xianming Zhang, Yanxu Zhang, Clifton Dassuncao, Rainer Lohmann, and Elsie M. Sunderland

Manuscripts from 2016

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Hydrogen Utilization Potential in Subsurface Sediments, Rishi R. Adhikari, Clemens Glombitza, Julia C. Nickel, Chloe H. Anderson, Ann G. Dunlea, Arthur J. Spivack, Richard W. Murray, Steven D'Hondt, and Jens Kallmeyer

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Traits controlling body size in copepods: separating general constraints from species-specific strategies, Neil S. Banas and Robert G. Campbell

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The Fina Nagu volcanic complex: Unusual submarine arc volcanism in the rapidly deforming southern Mariana margin, Maryjo Brounce, Katherine A. Kelley, Robert Stern, Fernando Martinez, and Elizabeth Cottrell

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Temporal variation of Skeletonema community composition from a long-term time series in Narragansett Bay identified using high-throughput DNA sequencing, Kelly L. Canesi and Tatiana A. Rynearson

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Hydrothermal venting and mineralization in the crater of Kick'em Jenny submarine volcano, Grenada (Lesser Antilles), Steven Carey, Rene Olsen, Katerine L.C. Bell, Robert Ballard, Frederic Dondin, Christopher Roman, Clara Smart, Marvin Lilley, John Lupton, Brad A. Seibel, Winton Cornell, and Craig Moyer

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Winter distribution and size structure of Antarctic krill Euphausia superba populations in-shore along the West Antarctic Peninsula, Alison C. Cleary, Edward G. Durbin, Maria C. Casas, and Meng Zhou

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Loop Current Eddy Formation and Baroclinic Instability, Kathleen A. Donohue, D. R. Watts, P. Hamilton, R. Leben, and M. Kennelly

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Radiolytic Hydrogen Production in the Subseafloor Basaltic Aquifer, Mary E. Dzaugis, Arthur J. Spivack, Ann G. Dunlea, Richard W. Murray, and Steven D'Hondt

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Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree, Omri M. Finkel, Tom O. Delmont, Anton F. Post, and Shimshon Belkin

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The Polar Front in Drake Passage: A composite‐mean stream‐coordinate view, Annie Foppert, Kathleen A. Donohue, and D. Randolph Watts

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On the Equilibrium-State Roll Vortices and Their Effects in the Hurricane Boundary Layer, Kun Gao and Isaac Ginis

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Physical and optical properties of phytoplankton-rich layers in a coastal fjord: a step toward prediction and strategic sampling of plankton patchiness, Jason R. Graff and Susanne Menden-Deuer

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A Vulnerability Assessment of Fish and Invertebrates to Climate Change on the Northeast U.S. Continental Shelf, Jonathan A. Hare, Wendy E. Morrison, Mark W. Nelson, Megan M. Stachura, Eric J. Teeters, Roger B. Griffs, Michael A. Alexander, James D. Scott, Larry Alade, Richard J. Bell, Antonie S. Chute, Kiersten L. Curti, Tobey H. Curtis, Daniel Kircheis, John F. Kocik, Sean M. Lucey, Camilla T. McCandless, Lisa M. Milke, David E. Richardson, Eric Robillard, Harvey J. Walsh, M. Connor McManus, Katrin E. Marancik, and Carolyn A. Grisworld

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Detection of Poly- and Perfluoroalkyl Substances (PFASs) in U.S. Drinking Water Linked to Industrial Sites, Military Fire Training Areas, and Wastewater Treatment Plants, Xindi C. Hu, David Q. Andrews, Andrew B. Lindstrom, Thomas A. Bruton, Laurel A. Schaider, Philippe Grandjean, Rainer Lohmann, Courtney C. Carignan, Arlene Blum, Simona A. Balan, Christopher P. Higgins, and Elise M. Sunderland

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Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years, Sarah J. Ivory, Margaret W. Blome, John W. King, Michael M. McGlue, Julia E. Cole, and Andrew S. Cohen

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Levels, Sources and Chemical Fate of Persistent Organic Pollutants in the Atmosphere and Snow along the Western Antarctic Peninsula, Mohammed A. Khairy, Jenna Luek, Rebecca Dickhut, and Rainer Lohmann

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A distinct source and differentiation history for Kolumbo submarine volcano, Santorini volcanic field, Aegean arc, Martijn Klaver, Steven Carey, Paraskevi Nomikou, Ingrid Smet, Athanasios Godelitsas, and Pieter Vroon

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Estimation of Uncertainty in Air-­Water Exchange Flux 2 and Gross Volatilization Loss of PCBs: a Case Study 3 based on Passive Sampling in the Lower Great Lakes, Ying Liu, Siyao Wang, Carrie A. McDonough, Mohammed Khairy, Derek Muir, and Rainer Lohmann

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Estimating the recharge properties of the deep ocean using noble gases and helium isotopes, Brice Loose, William J. Jenkins, Roisin Moriarty, Peter Brown, Loic Jullion, Alberto C. Naveiro Garabato, Sinhue Torres Valdes, Mario Hoppema, Chris Ballentine, and Michael P. Meredith

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Penetrative Radiative Flux in the Bay of Bengal, Aneesh A. Lotliker, Melissa M. Omand, Andrew J. Lucas, Samuel R. Laney, Amala Mahadevan, and M. Ravichandran

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Freshwater in the Bay of Bengal: Its Fate and Role in Air-Sea Heat Exchange, Amala Mahadevan, Gualtiero Spiro Jaeger, Mara Freilich, Melissa M. Omand, Emily L. Shroyer, and Debasis Sengupta

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Polycyclic Musks in the Air and Water of the Lower Great Lakes: Spatial Distribution and Volatilization from Surface Waters, Carrie A. McDonough, Paul A. Helm, Derek Muir, Gavino Puggioni, and Rainer Lohmann

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Spatial Distribution and Air-Water Exchange of Organic Flame Retardents in the Lower Great Lakes, Carrie A. McDonough, Gavino Puggioni, Paul A. Helm, Derek Muir, and Rainer Lohmann

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Phytoplankton size impact on export flux in the global ocean, Colleen B. Mouw, Audrey Barnett, Galen A. McKinley, Lucas Gloege, and Darren Pilcher

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A Review of Recent Advances in Red-Clay Environmental Magnetism and Paleoclimate History of the Chinese Loess Plateau, Junsheng Nie, Yougui Song, and John W. King

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Post-eruptive flooding of Santorini caldera and implications for tsunami generation, P. Nomikou, T. H. Druitt, C. Hübshcer, T. A. Mather, M. Paulatto, L. M. Kalnins, K. Kelfoun, D. Papnikolaou, K. Bejelou, D. Lampridou, D. M. Pyle, Steven Carey, A. B. Watts, B. Weiß, and M. M. Parks

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Observation of diurnal variations in mesoscale eddy sea-surface currents using GOCI data, Ji-Eun Park, Kyung-Ae Park, David S. Ullman, Peter C. Cornillon, and Young-Je Park

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Atmosphere‐ocean linkages in the eastern equatorial Pacific over the early Pleistocene, Patricia Povea, Isabel Cacho, Ana Moreno, Leopoldo D. Pena, Melisa Menéndez, Eva Calvo, Miquel Canals, Rebecca S. Robinson, Fernando J. Méndez, and Jose-Abel Flores

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Impact of Sea-State-Dependent Langmuir Turbulence on the Ocean Response to a Tropical Cyclone, Brandon G. Reichl, Isaac Ginis, Tetsu Hara, Biju Thomas, Tobias Kukulka, and Dong Wang

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Langmuir Turbulence Parameterization in Tropical Cyclone Conditions, Brandon G. Reichl, Dong Wang, Tetsu Hara, Isaac Ginis, and Tobias Kukulka