Explore scholarly publications from the Department of Biological Sciences faculty at the University of Rhode Island.

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Submissions from 2016

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Ploidy Distribution of the Harmful Bloom Forming Macroalgae Ulva spp. in Narragansett Bay, Rhode Island, USA, Using Flow Cytometry Methods, Elaine E. Potter, Carol S. Thornber, John-David Swanson, and Malcolm McFarland

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Notes on the marine algae of the Bermudas. 15. Dichotomaria huismanii (Galaxauraceae, Rhodophyta), a new species in the D. marginata complex from the western Atlantic, Craig W. Schneider, Thea R. Popolizio, Dylan S. Spagnuolo, and Christopher E. Lane

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Detection of artificial water flows by the lateral line system of a benthic feeding cichlid fish, Margot A. B. Schwalbe, Benjamin J. Sevey, and Jacqueline F. Webb

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The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine

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Targeted mutagenesis in bombyx mori using talens, Yoko Takasu, Toshiki Tamura, Marian Goldsmith, and Michal Zurovec

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Acoustic communication in butterflyfishes: Anatomical novelties, physiology, evolution, and behavioral ecology, Timothy C. Tricas and Jacqueline F. Webb

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Vertical movements of shortfin mako sharks Isurus oxyrinchus in the western North Atlantic Ocean are strongly influenced by temperature, Jeremy J. Vaudo, Bradley M. Wetherbee, Anthony D. Wood, Kevin Weng, Lucy A. Howey-Jordan, Guy M. Harvey, and Mahmood S. Shivji

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Impact of an Invasive Insect and Plant Defense on a Native Forest Defoliator, Claire M. Wilson, Justin F. Vendettuoli, David A. Orwig, and Evan L. Preisser

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Selection of Reference Genes for RT-qPCR Analysis in Coccinella septempunctata< to Assess Un-intended Effects of RNAi Transgenic Plants, Chunxiao Yang, Evan L. Preisser, Hongjun Zhang, Yong Liu, Liangying Dai, Huipeng Pan, and Xuguo Zhou

Submissions from 2015

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And on Top of All That… Coping with Ocean Acidification in the Midst of Many Stressors, Denise L. Breitburg, John Salisbury, Joan M. Bernhard, Wei-Jun Cai, Sam Dupont, Scott C. Doney, Kristy J. Kroeker, Lisa A. Levin, W. Christopher Long, Lisa M. Milke, Seth H. Miller, Beth Phelan, Uta Passow, Brad A. Seibel, Anne E. Todgham, and Ann M. Tarrant

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Observations of greenhouse gases and nitrate concentrations in a maine river and fringing wetland, Susan R. Bresney, Serena Moseman-Valtierra, and Noah P. Snyder

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A Comprehensive Analysis of the Chorion Locus in Silkmoth, Zhiwei Chen, Junko Nohata, Huizhen Guo, Shenglong Li, Jianqiu Liu, Youbing Guo, Kimiko Yamamoto, Keiko Kadono-Okuda, Chun Li, Kallare P. Arunkumar, Javaregowda Nagaraju, Yan Zhang, Shiping Liu, Vassiliki Labropoulou, Luc Swevers, Panagiota Tsitoura, Kostas Iatrou, Karumathil P. Gopinathan, Marian R. Goldsmith, Qingyou Xia, and Kazuei Mita

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Construction, Complete Sequence, and Annotation of a BAC Contig Covering the Silkworm Chorion Locus, Zhiwei Chen, Junko Nohata, Huizhen Guo, Shenglong Li, Jianqiu Liu, Youbing Guo, Kimiko Yamamoto, Keiko Kadono-Okuda, Chun Liu, Kallare P. Arunkumar, Javaregowda Nagaraju, Yan Zhang, Shiping Liu, Vassiliki Labropoulou, Luc Swevers, Panagiota Tsitoura, Kostas Iatrou, Karumathil P. Gopinathan, Marian R. Goldsmith, Qingyou Xia, and Kazuei Mita

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Debating the Role of Higher Education in Society, Bryan Dewsbury

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Etheliaceae fam. nov. (Gigartinales, Rhodophyta), with a clarification of the generitype of Ethelia and the addition of six novel species from warm waters, Kyatt R. Dixon, Gary W. Saunders, Craig W. Schneider, and Christopher E. Lane

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Predation Risk Perception, Food Density and Conspecific Cues Shape Foraging Decisions in a Tropical Lizard, Maximilian Drakeley, Oriol Lapiedra, and Jason J. Kolbe

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The thermal stress response to diel vertical migration in the hyperiid amphipod Phronima sedentaria, Leanne E. Elder and Brad A. Seibel

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Comparing monitoring data collected by volunteers and professionals shows that citizen scientists can detect long-term change on coral reefs, Graham E. Forrester, Patricia Baily, Dennis Conetta, Linda Forrester, Elizabeth Kintzing, and Lianna Jarecki

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Episodic Disturbance from Boat Anchoring Is a Major Contributor to, but Does Not Alter the Trajectory of, Long-Term Coral Reef Decline, Graham E. Forrester, Rebecca L. Flynn, Linda M. Forrester, and Lianna L. Jarecki

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Interactions between invasive herbivores and their long-term impact on New England hemlock forests, S. Gómez, L. Gonda-King, C. M. Orians, D. A. Orwig, R. Panko, L. Radville, N. Soltis, C. S. Thornber, and E. L. Preisser

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Extraocular spectral photosensitivity in the tentacles of Hydra vulgaris, S. Guertin and G. Kass-Simon

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Herbivore Impacts on Two Morphologically Similar Bloom-Forming Ulva Species in a Eutrophic Bay, Michele Guidone, Carol S. Thornber, and Kathryn L. Van Alstyne

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Habitat Selection of a Coastal Shark Species Estimated from an Autonomous Underwater Vehicle, D. E. Haulsee, M. W. Breece, D. C. Miller, Bradley M. Wetherbee, D. A. Fox, and M. J. Oliver

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Benefits of testing, Frank Heppner

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Effects of Light and Water Availability on the Performance of Hemlock Woolly Adelgid (Hemiptera: Adelgidae), Mauri Hickin and Evan L. Preisser

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Going global: The introduction of the Asian isopod Ianiropsis serricaudis Gurjanova (Crustacea: Peracarida) to North America and Europe, Niels-Viggo Hobbs, Eric Lazo-Wasem, Marco Faasse, Jeffrey R. Cordell, John W. Chapman, Carter S. Smith, Robert Prezant, Rebecca Shell, and James T. Carlton

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Reproductive morphology and DNA sequences of the brown alga Platysiphon verticillatus support the new combination Platysiphon glacialis, Hiroshi Kawai, Takeaki Hanyuda, Takahiro Yamagishi, Atsushi Kai, Chris E. Lane, Dan Mcdevit, Frithjof C. Küpper, and Gary W. Saunders

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Effects of Hind-Limb Length and Perch Diameter on Clinging Performance in Anolis Lizards from the British Virgin Islands, Jason J. Kolbe

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City slickers: poor performance does not deter Anolis lizards from using artificial substrates in human‐modified habitats, Jason J. Kolbe, Andrew C. Battles, and Kevin J. Avilés-Rodríguez

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Repeated, Long-Distance Migrations by a Philopatric Predator Targeting Highly Contrasting Ecosystems, James S.E. Lea, Bradley M. Wetherbee, Nuno Queiroz, Neil Burnie, Choy Aming, Laura L. Sousa, Gonzalo R. Mucientes, Nicolas E. Humphries, Guy M. Harvey, David W. Sims, and Mahmood S. Shivji

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Maternal Plasma and Breastmilk Viral Loads are Associated with HIV-1-Specific Cellular Immune Responses Among HIV-1-Exposed, Uninfected Infants in Kenya, Amy Y. Liu, Barbara Lohman-Payne, Michael H. Chung, James Kiarie, John Kinuthia, Jennifer Slyker, Barbra Richardson, Dara Lehman, Carey Farquhar, and Grace John-Stewart

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Greenhouse Gas Fluxes Vary Between Phragmites Australis and Native Vegetation Zones in Coastal Wetlands Along a Salinity Gradient, Rose M. Martin and Serena Moseman-Valtierra

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The Secreted Proteins of Achlya hypogyna and Thraustotheca clavata Identify the Ancestral Oomycete Secretome and Reveal Gene Acquisitions by Horizontal Gene Transfer, Ian Misner, Nic Blouin, Guy Leonard, Thomas A. Richards, and Christopher E. Lane

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Substantial nitrous oxide emissions from intertidal sediments and groundwater in anthropogenically-impacted West Falmouth Harbor, Massachusetts, Serena Moseman-Valtierra, Kevin D. Kroeger, John Crusius, Sandra Baldwin, Adrian Green, T. Wallace Brooks, and Emily Pugh

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Testing sample stability using four storage methods and the macroalgae Ulva and Gracilaria, Autumn Oczkowski, Carol S. Thornber, Erin E. Markham, Ryann Rossi, Amanda Ziegler, and Shelby Rinehart

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Error management in plant allocation to herbivore defense, John L. Orrock, Andy Sih, Maud C.O. Ferrari, Richard Karban, Evan L. Preisser, Michael J. Sheriff, and Jennifer S. Thaler

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Insecticides Promote Viral Outbreaks by Altering Herbivore Competition, Huipeng Pan, Evan L. Preisser, Dong Chu, Shaoli Wang, Qingjun Wu, Yves Carrière, Xuguo Zhou, and Youjun Zhang

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A molecular evaluation of the Liagoraceae sensu lato (Nemaliales, Rhodophyta) in Bermuda including Liagora nesophila sp. nov. and Yamadaella grassyi sp. nov., Thea R. Popolizio, Craig W. Schneider, and Christopher E. Lane

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Errata: Are exotic herbivores better competitors? A meta-analysis (Ecology (2014) 95 (30-36)), L. Radville, L. Gonda-King, S. Gómez, I. Kaplan, and E. L. Preisser

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The ghost plastid of Choreocolax polysiphoniae, Eric D. Salomaki, Katie R. Nickles, and Christopher E. Lane

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A Complementation Assay for in Vivo Protein Structure/Function Analysis in Physcomitrella patens (Funariaceae), Tess R. Scavuzzo-Duggan, Arielle M. Chaves, and Alison W. Roberts

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A Molecular-Assisted Alpha Taxonomic Study of the Genus Centroceras (Ceramiaceae, Rhodophyta) in Bermuda Reveals Two Novel Species, Craig W. Schneider, Elisabeth N. Cianciola, Thea R. Popolizio, Dylan S. Spagnuolo, and Christopher E. Lane

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A barcode analysis of the genus Lobophora (Dictyotales, Phaeophyceae) in the western Atlantic Ocean with four novel species and the epitypification of L. variegata (J.V. Lamouroux) E.C. Oliveira, Nikolaus E. Schultz, Christopher E. Lane, Line Le Gall, Delphine Gey, Anna R. Bigney, Bruno De Reviers, Florence Rousseau, and Craig W. Schneider

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The Effect of Light Intensity on Prey Detection Behavior in Two Lake Malawi Cichlids, Aulonocara stuartgranti and Tramitichromis sp., Margot A.B. Schwalbe and Jacqueline F. Webb

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Shark and ray life history, Colin A. Simpfendorfer and Bradley Wetherbee

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The valine and lysine residues in the conserved FxVTxK motif are important for the function of phylogenetically distant plant cellulose synthases, Erin Slabaugh, Tess Scavuzzo-Duggan, Arielle Chaves, Liza Wilson, Carmen Wilson, Jonathan K. Davis, Daniel J. Cosgrove, Charles T. Anderson, Alison Roberts, and Candace H. Haigler

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Contrasting effects of two exotic invasive hemipterans on whole-plant resource allocation in a declining conifer, Nicole E. Soltis, Sara Gómez, Liahna Gonda-King, Evan L. Preisser, and Colin M. Orians

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Manipulation of Host Quality and Defense by a Plant Virus Improves Performance of Whitefly Vectors, Qi Su, Evan L. Preisser, Wen Xie, Shao Li Wang, Qin Jun Wu, and You Jun Zhang

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Migratory patterns and habitat use of the sand tiger shark (Carcharias taurus) in the western North Atlantic, Shara M. Teter, Bradley M. Wetherbee, Dewayne A. Fox, Chi H. Lam, Dale A. Kiefer, and Mahmood Shivji

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Cellulose synthase (CESA) gene expression profiling of Physcomitrella patens, Mai L. Tran and Alison Roberts

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Hemlock Woolly Adelgid Alters Fine Root Bacterial Abundance and Mycorrhizal Associations in Eastern Hemlock, Justin F. Vendettuoli, David A. Orwig, Jennifer Adams Krumins, Matthew D. Waterhouse, and Evan L. Preisser

Submissions from 2014

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The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera, Virpi Ahola, Marian R. Goldsmith, and et al

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Using Non-Dietary Gastropods in Coastal Shell Middens to Infer Kelp and Seagrass Harvesting and Paleoenvironmental Conditions, Amira F. Ainis, René Vellanoweth, Queeny G. Lapeña, and Carol S. Thornber

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Heterochrony, Modularity, and the Functional Evolution of the Mechanosensory Lateral Line Canal System of Fishes, Nathan C. Bird and Jacqueline F. Webb

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Modeling the spread of invasive species using dynamic network models, Joseph R. Ferrari, Evan L. Preisser, and Matthew C. Fitzpatrick

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Tree Responses to an Invasive Sap-Feeding Insect, Liahna Gonda-King, Sara Gomez, Jessica L. Martin, Colin M. Orians, and Evan L. Preisser

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Physiological variation among invasive populations of the brown anole (Anolis sagrei), Jason J. Kolbe, Joseph C. Ehrenberger, Haley A. Moniz, and Michael J. Angilletta

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Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance, Ian C. McDowell, Chamilani Nikapitiya, Derek Aguiar, Christopher E. Lane, Sorin Istrail, and Marta Gomez-Chiarri

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TERPENE CHEMISTRY OF EASTERN HEMLOCKS RESISTANT TO HEMLOCK WOOLLY ADELGID, E. Alexa McKenzie, Joseph S. Elkinton, Richard A. Casagrande, Evan L. Preisser, and Mark Mayer

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Untangling Intra- and Interspecific Effects on Body Size Clines Reveals Divergent Processes Structuring Convergent Patterns in Anolis Lizards, Martha M. Muñoz, Johanna E. Wegener, and Adam C. Algar

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Mitochondrial genome sequences and comparative genomics of Achlya hypogyna and Thraustotheca clavata, Megan A. O'Brien, Ian Misner, and Christopher E. Lane

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A Lack of Parasitic Reduction in the Obligate Parasitic Green Alga Helicosporidium, Jean-François Pombert, Nicolas Achille Blouin, Christopher E. Lane, Drion Boucias, and Patrick J. Keeling

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Hemlock Woolly Adelgid in the Eastern United States: What Have We Learned?, Evan L. Preisser, Kelly L.F. Oten, and Fred P. Hain

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Are Exotic Herbivores Better Competitors? A Meta-Analysis, Laura Radville, Liahna Gonda-King, Sara Gomez, Ian Kaplan, and Evan L. Preisser

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Overwintering Strategies of Bloom-Forming Ulva Species in Narragansett Bay, Rhode Island, USA, Shelby Rinehart, Michele Guidone, Amanda Ziegler, Tanja Schollmeier, and Carol S. Thornber

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Deep-Sea Octopus (Graneledone boreopacifica) Conducts the Longest-Known Egg-Brooding Period of Any Animal, Bruce Robison, Brad A. Seibel, and Jeffrey Drazen

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Are All Red Algal Parasites Cut from the Same Cloth?, Eric D. Salomaki and Christopher E. Lane

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Notes on the marine algae of the Bermudas. 14. Five additions to the benthic flora, including a distinctive second new species of Crassitegula (Rhodophyta, Sebdeniales) from the western Atlantic Ocean, Craig W. Schneider, Thea R. Popolizio, and Christopher E. Lane

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The monospecific genus Meredithia (Kallymeniaceae, Gigartinales) is species rich and geographically widespread with species from temperate Atlantic, Pacific, and Indian Oceans, Craig W. Schneider, Gary W. Saunders, and Christopher E. Lane

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Metabolic suppression during protracted exposure to hypoxia in the jumbo squid, Dosidicus gigas, living in an oxygen minimum zone, Brad A. Seibel, N. Sören Häfker, Katja Trübenbach, Jing Zhang, Shannon N. Tessier, Hans-Otto Pörtner, Rui Rossa, and Kenneth B. Storey

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Comparison of Phenotypic Value Changes in Pure Lines of Bombyx mori (Lepidoptera: Bombycidae) During Consecutive Generations Following Initial Selection on Cocoon Weight, Alireza Seidavi and Marian R. Goldsmith

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Predation-associated modulation of movement-based signals by a Bahamian lizard, David S. Steinberg, Jonathan B. Losos, Thomas W. Schoener, David A. Spiller, Jason J. Kolbe, and Manuel Leal

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Slow swimming, fast strikes: effects of feeding behavior on scaling of anaerobic metabolism in epipelagic squid, Lloyd A. Trueblood and Brad A. Seibel

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THE INFLUENCE OF SALT MARSH FUCOID ALGAE (ECADS) ON SEDIMENT DYNAMICS OF NORTHWEST ATLANTIC MARSHES, M. C. Tyrrell, Carol S. Thornber, J. A. Burkhardt, and M. Congretel

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Intraspecific variation in vertical habitat use by tiger sharks (Galeocerdo cuvier) in the western North Atlantic, Jeremy J. Vaudo, Bradley M. Wetherbee, Guy Harvey, Richard S. Nemeth, Choy Aming, Neil Burnie, Lucy A. Howey-Jordan, and Mahmood S. Shivji

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Lateral line morphology and development and implications for the ontogeny of flow sensing in fishes, Jacqueline F. Webb

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Comparative development and evolution of two lateral line phenotypes in Lake Malawi cichlids, Jacqueline F. Webb, Nathan C. Bird, Lauren Carter, and Juleen Dickson

Submissions from 2013

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Supplemental Feeding for Ecotourism Reverses Diel Activity and Alters Movement Patterns and Spatial Distribution of the Southern Stingray, Dasyatis americana, Mark J. Corcoran, Bradley M. Wetherbee, Mahmood S. Shivji, Matthew D. Potenski, Demian D. Chapman, and Guy M. Harvey

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Long-term survival and colony growth of Acropora palmata fragments transplanted by volunteers for restoration, Graham E. Forrester, Megan A. Ferguson, Caitlin E. O'Connell-Rodwell, and Lianna L. Jarecki

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Colony growth of corals transplanted for restoration depends on their site of origin and environmental factors, Graham E. Forrester, Kerianne Taylor, Stephanie Schofield, and Amy Maynard

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Competitor Avoidance Drives Within-Host Feeding Site Selection in a Passively-Dispersed Herbivore, Sara Gomez, Liahna Gonda-King, Colin M. Orians, and Evan L. Preisser

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Examination of Ulva bloom species richness and relative abundance reveals two cryptically co- occurring bloom species in Narragansett Bay, Rhode Island, Michele Guidone and Carol S. Thornber

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The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment, i5K Consortium and Marian Goldsmith

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Study of Cis-regulatory elements in the Ascidian Ciona intestinalis, Steven Q. Irvine

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The desire for variety: Italian wall lizard (Podarcis siculus) populations introduced to the United States via the pet trade are derived from multiple native-range sources, Jason J. Kolbe, Brian R. Lavin, Russell L. Burke, Lorenzo Rugiero, Massimo Capula, and Luca Luiselli

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Multiple Forms of Vector Manipulation by a Plant-Infecting Virus: Bemisia tabaci and Tomato Yellow Leaf Curl Virus , Baiming Liu, Evan L. Preisser, Dong Chu, Huipend Pan, Wen Xie, Shaoli Wang, Qingjun Wu, Xuguo Zhou, and Youjun Zhang

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Plant-mediated changes in the feeding behavior of an invasive whitefly, Baiming Liu, Evan L. Preisser, Xiaoguo Jiao, Huipeng Pan, Wen Xie, Shaoli Wang, Qingjun Wu, and Youjun Zhang

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Sequence comparative analysis using networks: Software for evaluating de novo transcript assembly from next-generation sequencing, Ian Misner, Cédric Bicep, Philippe Lopez, Sébastien Halary, Eric Bapteste, and Christopher E. Lane

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Chromatin-induced Spindle Assembly Plays an Important Role in Metaphase Congression of Silkworm Holocentric Chromosomes, Hiroaki Mon, Jae Man Lee, Kazuei Mita, Marian R. Goldsmith, and Takahiro Kusakabe

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Invasion of the Red Seaweed Heterosiphonia japonica Spans Biogeographic Provinces in the Western North Atlantic Ocean, Christine Newton, Matthew E.S. Bracken, Megan McConville, Katherine Rodrigue, and Carol S. Thornber

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The cost of safety: Refuges increase the impact of predation risk in aquatic systems, John L. Orrock, Evan L. Preisser, Jonathan H. Grabowski, and Geoffrey C. Trussell

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Hemlock Woolly Adelgid and Elongate Hemlock Scale Induce Changes in Foliar and Twig Volatiles of Eastern Hemlock, Joshua Pezet, Joseph Elkinton, Sara Gomez, E. Alexa McKenzie, Michael Lavine, and Evan Preisser

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Notes on the marine algae of the Bermudas. 13. Helminthocladia kempii sp. nov. (Nemaliales, Liagoraceae) based upon h. calvadosii sensu auct. from the western Atlantic1, Thea R. Popolizio, Craig W. Schneider, Tayoot Chengsupanimit, Gary W. Saunders, and Christopher E. Lane

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Chinese mantids gut toxic monarch caterpillars: Avoidance of prey defence?, Jamie L. Rafter, Anurag A. Agrawal, and Evan L. Preisser

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Sensory basis for detection of benthic prey in two Lake Malawi cichlids., Margot A. B. Schwalbe and Jacqueline F. Webb

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The real limits to marine life: a further critique of the Respiration Index, Brad A. Seibel and J. J. Childress

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Sex-Specific Correlations of Individual Heterozygosity, Parasite Load, and Scalation Asymmetry in a Sexually Dichromatic Lizard, Pei-Jen L. Shaner, Ying-Ru Chen, Jhan-Wei Lin, Jason J. Kolbe, and Si-Min Lin

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Failure Under Stress: The Effect of the Exotic Herbivore Adelges tsugae on Biomechanics of Tsuga canadensis, Nicole E. Soltis, Sara Gomez, Gary G. Leisk, Patrick Sherwood, Evan L. Preisser, Pierluigi Bonello, and Colin M. Orians

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Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori, Yoshitaka Suetsugu, Ryo Futahashi, Hiroyuki Kanamori, Keiko Kadono-Okuda, Shun-ichi Sasanuma, Junko Narukawa, Masahiro Ajimura, Nobukazu Namiki, Michihiko Shimomura, Hideki Sezutsu, Mizuko Osanai-Futahashi, Masataka G. Suzuki, Takaaki Daimon, Tetsuro Shinoda, Kiyoko Taniai, Kiyoshi Asaoka, Ryusuke Niwa, Shinpei Kawaoka, Susumu Katsuma, Toshiki Tamura, Hiroaki Noda, Masahiro Kasahara, Sumio Sugano, Yutaka Suzuki, Haruhiko Fujiwara, Kallare P. Arunkumar, Archana Tomar, Javaregowda Nagaraju, Marian R. Goldsmith, Qili Feng, Qingyou Xia, Kimiko Yamamoto, Toru Shimada, and Kazuei Mita

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Ventilation rates and activity levels of juvenile jumbo squid under metabolic suppression in the oxygen minimum zone, Katja Trübenbach, Maria R. Pegado, Brad A. Seibel, and Rui Rosa