Date of Award

2025

Degree Type

Dissertation

Degree Name

Doctor of Philosophy in Biological and Environmental Sciences

Department

Biological Sciences

First Advisor

Jonathan B. Puritz

Abstract

Urbanized estuaries are characterized as a complex of biotic and abiotic stressors, which currently challenge marine life and are expected to intensify and become increasingly unpredictable under the ongoing impacts of climate change. The persistence of coastal species that inhabit these stressful environments will ultimately depend on their ability to adapt. Many of these species have complex life cycles, featuring distinct morphological and physiological developmental stages that can exhibit unique responses to environmental pressures. However, since all stages share the same genome, selective pressures acting on one stage can have cascading effects throughout the life cycle. The larval stage, being particularly sensitive to environmental stressors and often the only free-moving stage, plays a crucial role in gene flow across populations. Consequently, selection during this stage can set the trajectory for the entire life cycle and significantly influence the adaptive structure of populations. This dissertation explores the impacts of multiple environmental stressors across the life-history stages of the eastern oyster (Crassostrea virginica). In Chapter 1, we integrated genomic information about larval stressor response into a seascape genomics framework, using adult oysters sampled from various localities with differing environmental profiles in Narragansett Bay, Rhode Island. We identified environmentally driven signatures of local adaptation corresponding to different genomic regions, even amidst high gene flow. In loci putatively under selection in larvae exposed to coastal stressors, we found stressor-specific associations with environmental conditions that aligned with adult candidate loci, highlighting the critical role of the larval stage in shaping population adaptive divergence. In Chapter 2, we exposed genetically diverse pools of larval oysters to diurnal fluctuating acidification and hypoxia for most of their development. Genomic analysis of samples taken before and after exposure revealed substantial shifts in allele frequencies at loci putatively under selection, suggesting a potential for rapid adaptation to future environmental conditions. Chapter 3 extended this work by exposing oysters to these stressors from the pediveliger stage, through settlement, and into early juvenile development. Genomic analysis from the larval and settlement exposure periods revealed both unique and shared signatures of selection across the early developmental stages. While the juvenile stage was more tolerant to the stressor conditions, we found that stressor exposure through the pediveliger larval and settlement stages had short-term carryover effects on juvenile performance. These findings demonstrate the complex connection of evolutionary responses across the full life cycle. While early developmental stages are sensitive to coastal stressors, our analysis reveals adaptive responses that highlight the resilience of this species. Specifically, these early life-stage responses can influence later developmental stages, shaping the species' overall adaptive capacity and impacting population structure dynamics. Consequently, understanding these dynamics is crucial for predicting how population structure and adaptive divergence will evolve in response to intensifying coastal stressors.

Available for download on Thursday, November 27, 2025

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