Publications from the Department of Cell and Molecular Biology faculty at the University of Rhode Island.

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Submissions from 2019

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Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants, Benjamin Gabriel, Carey Medin, Jeremiah Alves, Ruth Nduati, Rose Kerubo Bosire, Dalton Wamalwa, Carey Farquhar, Grace John-Steward, and Barbara L. Lohman-Payne

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Planarity and out-of-plane vibrational modes of tryptophan and tyrosine in biomolecular modeling, Faramarz Joodaki, Lenore M. Martin, and Michael L. Greenfield

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Evidence for activated Lck protein tyrosine kinase as the driver of proliferation in acute myeloid leukemia cell, CTV-1, Li Li, Yixin Cui, Jinyan Shen, Hannah Dobson, and Gongqin Sun

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Ponatinib Inhibits Proliferation and Induces Apoptosis of Liver Cancer Cells, but Its Efficacy Is Compromised by Its Activation on PDK1/Akt/mTOR Signaling, Chang Liu, Xiuli Mu, Xuan Wang, Chan Zhang, Lina Zhang, Baofeng Yu, and Gongqin Sun

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Drug Sensitivity Screening and Targeted Pathway Analysis Reveal a Multi-Driver Proliferative Mechanism and Suggest a Strategy of Combination Targeted Therapy for Colorectal Cancer Cells, Jinyan Shen, Li Li, Tao Yang, Niuliang Cheng, and Gongqin Sun

Submissions from 2018

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Structural versatility that serves the function of the HRD motif in the catalytic loop of protein tyrosine kinase, Src, Yixin Cui and Gongqin Sun

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Upregulation of HLA‐E by dengue and not Zika viruses, Elena Drews, Awadalkareem Adam, Phone Htoo, Elizabeth Townsley, and Anuja Mathew

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An Essential Staphylococcus Aureus Cell Division Protein Directly Regulates FtsZ Dynamics, Prahathees J. Eswara, Robert S. Brzozowski, Marissa G. Viola, Gianni Graham, Catherine Spanoudis, Catherine Trebino, Jyoti Jha, Joseph I. Aubee, Karl M. Thompson, Jodi L. Camberg, and Kumaran S. Ramamurthi

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Histone Methylation by SETD1A Protects Nascent DNA through the Nucleosome Chaperone Activity of FANCD2, Martin R. Higgs, Koichi Sato, John J. Reynolds, Shabana Begum, Rachel Bayley, Amalia Goula, Audrey Vernet, Karissa L. Paquin, David G. Skalnik, Wataru Kobayashi, Minoru Takata, Niall G. Howlett, Hitoshi Kurumizaka, Hiroshi Kimura, and Grant S. Stewart

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Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio Parahaemolyticus, Jason P. LaPorte, Edward J. Spinard, Marta Gomez-Chiarri, David C. Rowley, John J. Mekalanos, and David R. Nelson

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High background in ELISpot assays is associated with elevated levels of immune activation in HIV‐1‐seronegative individuals in Nairobi, Amy Y. Liu, Stephen C. De Rosa, Brandon L. Guthrie, Robert Y. Choi, Rose Kerubo-Bosire, Barbara A. Richardson, James Kiarie, Carey Farquhar, and Barbara L. Lohman-Payne

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HIV-exposed uninfected infants: elevated cord blood Interleukin 8 (IL-8) is significantly associated with maternal HIV infection and systemic IL-8 in a Kenyan cohort, Barbara L. Lohman-Payne, Benjamin Gabriel, Sangshin Park, Dalton Wamalwa, Elizabeth Maleche-Obimbo, Carey Farquhar, Rose Kerubo Bosire, and Grace John-Steward

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Evolution of the Natural Transformation Protein, ComEC, in Bacteria, Zachary T. Pimentel and Ying Zhang

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Draft Genome Sequence of the Putative Marine Pathogen Aquimarina sp. Strain I32.4, Hilary J. Ranson, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz

Submissions from 2017

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Dengue virus induces mitochondrial elongation through impairment of Drp1-triggered mitochondrial fission, Vincent Barbier, Diane Lang, Dierra Valois, Alan L. Rothman, and Carey L. Medin

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An immunoinformatics-derived DNA vaccine encoding human class II T cell epitopes of Ebola virus, Sudan virus, and Venezuelan equine encephalitis virus is immunogenic in HLA transgenic mice, Callie E. Bounds, Frances E. Terry, Leonard Moise, Drew Hannaman, William D. Martin, Anne S. De Groot, John J. Suschak, Lesley C. Dupuy, and Connie S. Schmaljohn

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Knowledge, attitudes, practices and willingness to vaccinate in preparation for the introduction of HPV vaccines in Bamako, Mali, Anne S. De Groot, Karamoko Tounkara, Mali Rochas, Sarah Beseme, Shahla Yekta, Fanta Siby Diallo, J. Kathleen Tracy, Ibrahima Teguete, and Ousmane A. Koita

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A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation, Keith Dufault-Thompson, Huahua Jian, Ruxue Cheng, Jiefu Li, Fengping Wang, and Ying Zhang

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Composition and Function of Mutant Swi/Snf Complexes, Arnob Dutta, Mihaela Sardiu, Madelaine Gogol, Joshua Gilmore, Daoyong Zhang, Laurence Florens, Susan M. Abmayr, Michael P. Washburn, and Jerry L. Workman

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T‐cell epitope content comparison (EpiCC) of swine H1 influenza A virus hemagglutinin, Andres H. Gutiérrez, Vicki J. Rapp-Gabrielson, Frances E. Terry, Crystal L. Loving, Leonard Moise, William D. Martin, and Anne S. De Groot

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Proteomic responses to elevated ocean temperature in ovaries of the ascidian Ciona intestinalis, Chelsea E. Lopez, Hannah C. Sheehan, David A. Vierra, Paul A. Azzinaro, Thomas H. Meedel, Niall G. Howlett, and Steven Q. Irvine

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Selectable marker independent transformation of recalcitrant maize inbred B73 and sorghum P898012 mediated by morphogenic regulators BABY BOOM and WUSCHEL2, Muruganatham Mookkan, Kimberly Nelson-Vasilchik, Joel Hague, Zhanyuan J. Zhang, and Albert P. Kausch

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Isocitrate Dehydrogenase Mutation in Vibrio anguillarum Results in Virulence Attenuation and Immunoprotection in Rainbow Trout (Oncorhynchus mykiss), Xiangyu Mou, Edward J. Spinard, Shelby L. Hillman, and David R. Nelson

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Defining Genetic Fitness Determinants and Creating Genomic Resources for an Oral Pathogen, Ajay M. Narayanan, Matthew M. Ramsey, Apollo Stacy, and Marvin Whiteley

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Modulation of the Fanconi anemia pathway via chemically induced changes in chromatin structure, David A. Vierra, Jada L. Garzon, Meghan A. Rego, Morganne M. Adroved, Maurizio Mauro, and Niall G. Howlett

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Proteolysis-Dependent Remodeling of the Tubulin Homolog FtsZ at the Division Septum in Escherichia coli, Marissa G. Viola, Christopher J. LaBreck, Joseph Conti, and Jodi L. Camberg

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A humanized mouse model identifies key amino acids for low immunogenicity of H7N9 vaccines, Yamato Wada, Arnone Nithichanon, Eri Nobusawa, Leonard Moise, William D. Martin, Norio Yamamoto, Kazutaka Terahara, Haruhisa Hagiwara, Takato Odagiri, Masato Tashiro, Ganjana Lertmemongkolchai, Haruko Takeyama, Anne S. De Groot, Manabu Ato, and Yoshimasa Takahashi

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Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz

Submissions from 2016

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Advancing Crop Transformation in the Era of Genome Editing, Fredy Altpeter, Nathan M. Springer, Laura E. Bartley, Ann E. Blechl, Thomas P. Brutnell, Vitaly Citovsky, Liza J. Conrad, Stanton B. Gelvin, David P. Jackson, Albert P. Kausch, Peggy G. Lemaux, June I. Medford, Martha L. Orozco-Cárdenas, David M. Tricoli, Joyce Van Eck, Daniel F. Voytas, Virginia Walbot, Kan Wang, Zhanyuan J. Zhang, and C. Neal Stewart Jr.

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Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida, Javier Dubert, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, Jesus L. Romalde, and Juan L. Barja

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Contributions of Tropodithietic Acid and Biofilm Formation to the Probiotic Activity of Phaeobacter Inhibens, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model, Andres H. Gutiérrez, Crystal Loving, Leonard Moise, Frances E. Terry, Susan L. Brockmeier, Holly R. Hughes, William D. Martin, and Anne S. De Groot

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Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize, Andrew P. Hayward, Maria A. Moreno, Thomas P. Howard III, Joel Hague, Kimberly Nelson, Christopher Heffelfinger, Sandra Romero, Albert P. Kausch, Gaétan Glauser, Ivan F. Acosta, John P. Mottinger, and Stephen L. Dellaporta

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Thyrotropin Receptor Epitope and Human Leukocyte Antigen in Graves’ Disease, Hidefumi Inaba, Leslie J. De Groot, and Takashi Akamizu

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In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L., Albert P. Kausch, Michael Tilelli, Joel Hague, Christopher Heffelfinger, David Cunha, Maria Moreno, Stephen L. Dellaporta, and Kimberly Nelson

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Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease), Linda Kessner, Edward Spinard, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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Uropathogenic Escherichia coli Metabolite-Dependent Quiescence and Persistence May Explain Antibiotic Tolerance during Urinary Tract Infection, Mary P. Leatham-Jensen, Matthew E. Mokszycki, David C. Rowley, Robert Deering, Jodi L. Camberg, Evgeni V. Sokurenko, Veronika L. Tchesnokova, Jakob Frimodt-Møller, Karen A. Krogfelt, Karen Leth Nielsen, Niels Frimodt-Møller, Gongqin Sun, and Paul S. Cohen

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Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus, Edward J. Spinard, Javier Dubert, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja

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The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine

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PSAMM: A Portable System for the Analysis of Metabolic Models, Jon Lund Steffensen, Keith Dufault-Thompson, and Ying Zhang

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The PTEN Phosphatase Functions Cooperatively with the Fanconi Anemia Proteins in DNA Crosslink Repair, Elizabeth A. Vuono, Ananda Mukherjee, David A. Vierra, Morganne M. Adroved, Charlotte Hodson, Andrew J. Deans, and Niall G. Howlett

Submissions from 2015

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Structure-Based Redesign of Lysostaphin Yields Potent Antistaphylococcal Enzymes that Evade Immune Cell Surveillance, Kristina Blazanovic, Hongliang Zhao, Yoonjoo Choi, Wen Li, Regina S. Salvat, Daniel C. Osipovitch, Jennifer Fields, Leonard Moise, Brett L. Berwin, Steven N. Fiering, Chris Bailey-Kellogg, and Karl E. Griswold

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Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Joselynn R. Wallace, Adam I. Darer, Samua Jean-Chales, and Bethany D. Jenkins

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C3d adjuvant effects are mediated through the activation of C3d-specific autoreactive T cells, Anne S. De Groot, Ted M. Ross, Lauren Levitz, Timothy J. Messitt, Ryan Tassone, Christine M. Boyle, Amber J. Vincelli, Leonard Moise, William Martin, and Paul M. Knopf

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Collagen Gel Formation in the Presence of a Carbon Nanobrush, George W. Dombi, Kaushalkumar Purohit, Lenore M. Martin, and Sze C. Yang

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An immunoinformatic approach for identification of Trypanosoma cruzi HLA-A2-restricted CD8+ T cell epitopes, Christopher S. Eickhoff, Daniel Van Aartsen, Francis E. Terry, Sheba K. Meymandi, Mahmoud M. Traina, Salvador Hernandez, William D. Martin, Leonard Moise, Anne S. De Groot, and Daniel F. Hoft

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Designing AMPed: The Practical Antimicrobial Peptide Editable Database, Tripti Garg, George Konstantinidis, Joan Peckham, Admir Monteiro, Roxanne LaCroix, and Lenore M. Martin

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Development and Validation of an Epitope Prediction Tool for Swine (PigMatrix) Based on the Pocket Profile Method, Andres H. Gutiérrez, William D. Martin, Chris Bailey-Kellogg, Frances Terry, Leonard Moise, and Anne S. De Groot

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Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95, Meagan Hamblin, Edward Spinard, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Genomic Characterization of Interspecific Hybrids and an Admixture Population Derived from Panicum amarum × P. virgatum, Christopher Heffelfinger, Adam P. Deresienski, Kimberly A. Nelson, Maria A. Moreno, Joel P. Hague, Stephen L. Dellaporta, and Albert P. Kausch

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Preclinical development of HIvax: human survivin Highly Immunogenic vaccines, Peter R. Hoffmann, Maddalena Panigada, Elisa Soprana, Francis Terry, Ivo Sah Bandar, Andrea Napolitano, Aaron H. Rose, Fukun W. Hoffmann, Lishomwa C. Ndhlovu, Mahdi Belcaid, Lenny Moise, Anne S. De Groot, Michele Carbone, Giovanni Gaudino, Takashi Matsui, Antonio Siccardi, and Pietro Bertino

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8th vaccine renaissance: A creative nexus for vaccine developers, Heather Johnson, Lenny Moise, Austin Menge, Sarah Beseme, and Anne S. De Groot

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Comparing Structures of Two Antimicrobial Peptides Using a Self-Organized Mapping Approach, Faramarz Joodaki, Preston Steele, Lenore M. Martin, and Michael L. Greenfield

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Effects of CO2 on Growth Rate, C:N:P, and Fatty Acid Composition of Seven Marine Phytoplankton Species, Andrew L. King, Bethany D. Jenkins, Joselynn R. Wallace, Yuan Liu, Gary H. Wikfors, Lisa M. Milke, and Shannon L. Meseck

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H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance, Rui Liu, Leonard Moise, Ryan Tassone, Andres H. Gutierrez, Francis E. Terry, Kotou Sangare, Matthew T. Ardito, William D. Martin, and Anne S. De Groot

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T Cell Epitope Redundancy: Cross-conservation of the TCR face between Pathogens and Self and its Implications for Vaccines and Auto-immunity, Leonard Moise, Sarah Beseme, Ryan Tassone, Rui Liu, Farzana Kibria, Francis Terry, William Martin, and Anne S. De Groot

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iVax: An integrated toolkit for the selection and optimization of antigens and the design of epitope-driven vaccines, Leonard Moise, Andres H. Gutierrez, Farzana Kibria, Rebecca Martin, Ryan Tassone, Rui Liu, Francis Terry, William Martin, and Anne S. De Groot

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Escherichia coli EDL933 Requires Gluconeogenic Nutrients To Successfully Colonize the Intestines of Streptomycin-Treated Mice Precolonized with E. coli Nissle 1917, Silvia A. C. Schinner, Matthew E. Mokszycki, Jimmy Adediran, Mary Leatham-Jensen, and Paul S. Cohen

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Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22, Edward Spinard, Linda Kessner, Marta Gomez-Chiarri, D. C. Rowley, and David R. Nelson

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Time for T? Immunoinformatics addresses the challenges of vaccine design for neglected tropical and emerging infectious diseases, Francis E. Terry, Leonard Moise, Rebecca Martin, Melissa Torres, Nils Pilotte, Steven Williams, and Anne S. De Groot

Submissions from 2014

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CHOPPI: a web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production, Chris Bailey-Kellogg, Andres H. Gutiérrez, Leonard Moise, Frances Terry, William D. Martin, and Anne S. De Groot

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Profiling Gene Expression to Distinguish the Likely Active Diazotrophs from a Sea of Genetic Potential in Marine Sediments, S M. Brown and Bethany D. Jenkins

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Location of Dual Sites in E. coli FtsZ Important for Degradation by ClpXP; One at the C-Terminus and One in the Disordered Linker, Jodi L. Camberg, Marissa G. Viola, Leslie Rea, Joel R. Hoskins, and Sue Wickner

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Human leptospirosis in The Federated States of Micronesia: a hospital-based febrile illness survey, Susannah Colt, Boris I. Pavlin, Jacob L. Kool, Eliaser Johnson, Judith P. McCool, and Alistair J. Woodward

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Tregitope: Immunomodulation Powerhouse, Leslie Cousens, Nader Najafian, William D. Martin, and Anne S. De Groot

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Cross-conservation of T-cell epitopes: Now even more relevant to (H7N9) influenza vaccine design, Anne S. De Groot, Lenny Moise, Rui Liu, Andres H. Gutierrez, Frances Terry, Ousmane A. Koita, Ted M. Ross, and William Martin

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Immune Camouflage: Relevance to Vaccine Design and Human Immunology, Anne S. De Groot, Leonard Moise, Rui Liu, Andres H. Gutierrez, Ryan Tassone, Chris Bailey-Kellogg, and William Martin

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Meeting Report: Ocean ‘Omics Science, Technology and Cyberinfrastructure: Current Challenges and Future Requirements (August 20-23, 2013), Jack A. Gilbert, Gregory J. Dick, Bethany D. Jenkins, John Heidelberg, Eric Allen, Katherine R.M. Mackey, and Edward F. DeLong

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Flexible and Scalable Genotyping-by-Sequencing Strategies for Population Studies, Christopher Heffelfinger, Christopher A. Fragoso, Maria A. Moreno, John D. Overton, John P. Mottinger, Hongyu Zhao, Joe Tohme, and Stephen L. Dellaporta

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Integrated Assessment of Predicted MHC binding and Cross-conservation with Self Reveals Patterns of Viral Camouflage, Lu He, Anne S. DeGroot, Andres H. Gutierrez, William D. Martin, Lenny Moise, and Chris Bailey-Kellogg

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Identification of the Maize Gravitropism Gene lazy plant1 by a Transposon-Tagging Genome Resequencing Strategy, Thomas P. Howard III, Andrew P. Hayward, Anthony Tordillos, Christopher Fragoso, Maria A. Moreno, Joe Tohme, Albert P. Kausch, John P. Mottinger, and Stephen L. Dellaporta

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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans Through Transcriptome Sequencing, Patrick J. Keeling, Bethany D. Jenkins, Susanne Menden-Deuer, and et al

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VaxCelerate II: Rapid development of a self-assembling vaccine for Lassa fever, Pierre Leblanc, Leonard Moise, Cybelle Luza, Kanawat Chantaralawan, Lynchy Lezeau, Jianping Yuan, Mary Field, Daniel Richer, Christine Boyle, William D. Martin, Jordan B. Fishman, Eric A. Berg, David Baker, Brandon Zeigler, Dale E. Mais, William Taylor, Russell Coleman, H. Shaw Warren, Jeffrey A. Gelfand, Anne S. De Groot, Timothy Brauns, and Mark C. Poznansky

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HCV Epitope, Homologous to Multiple Human Protein Sequences, Induces a Regulatory T Cell Response in Infected Patients, Phyllis T. Losikoff, Sasmita Mishra, Francis Terry, Andres Gutierrez, Matt T. Ardito, Loren Fast, Martha Nevola, William D. Martin, Chris Bailey-Kellogg, Anne S. De Groot, and Stephen H. Gregory

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Escherichia coli Pathotypes Occupy Distinct Niches in the Mouse Intestine, Jessica P. Meador, Matthew E. Caldwell, Paul S. Cohen, and Tyrrell Conway

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Dendritic Cell-Mediated, DNA-Based Vaccination Against Hepatitis C Induces the Multi-Epitope-Specific Response of Humanized, HLA Transgenic Mice, Sasmita Mishra, Bianca J. Lavelle, Joe Desrosiers, Matt T. Ardito, Frances Terry, William D. Martin, Anne S. De Groot, and Stephen H. Gregory

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Peptide-Pulsed Dendritic Cells Induce the Hepatitis C Viral Epitope-Specific Responses of Naïve Human T Cells, Sasmita Mishra, Phyllis T. Losikoff, Alyssa A. Self, Frances Terry, Matthew T. Ardito, Ryan Tassone, William D. Martin, Anne S. De Groot, and Stephen H. Gregory

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Smarter Vaccine Design Will Circumvent Regulatory T Cell-Mediated Evasion in Chronic HIV and HCV Infection, Leonard Moise, Frances Terry, Andres H. Gutierrez, Ryan Tassone, Phyllis Losikoff, Stephen H. Gregory, Chris Bailey-Kellogg, William D. Martin, and Anne S. De Groot

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A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes, Regina Salvat, Leonard Moise, Chris Bailey-Kellogg, and Karl E. Griswold

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Cyclic Peptide-Capped Gold Nanoparticles for Enhanced siRNA Delivery, Amir Nasrolahi Shirazi, Karissa L. Paquin, Niall G. Howlett, Dindyal Mandal, and Keykavous Parang

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Homeoviscous response of Clostridium pasteurianum to butanol toxicity during glycerol fermentation, Keerthi P. Venkataramanan, Yogi Kurniawan, Judy J. Boatman, Cassandra H. Haynes, Katherine A. Taconi, Lenore M. Martin, Geoffrey D. Bothun, and Carmen Scholz

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Human Immune Responses to H. pylori HLA Class II Epitopes Identified by Immunoinformatic Methods, Songhua Zhang, Joseph Desrosiers, Jose R. Aponte-Pieras, Kristen DaSilva, Loren D. Fast, Frances Terry, William D. Martin, Anne S. De Groot, Leonard Moise, and Steven F. Moss

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Pan-Genome Analyses Identify Lineage- and Niche-Specific Markers of Evolution and Adaptation in Epsilonproteobacteria, Ying Zhang and Stefan M. Sievert

Submissions from 2013

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An Escherichia coli Nissle 1917 Missense Mutant Colonizes the Streptomycin-Treated Mouse Intestine Better than the Wild Type but Is Not a Better Probiotic, Jimmy Adediran, Mary P. Leatham-Jensen, Matthew E. Mokszycki, Jakob Frimodt-Møller, Karen A. Krogfelt, Krystyna Kazmierczak, Linda J. Kenney, Tyrrell Conway, and Paul S. Cohen

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Microbial Community Structure of a Leachfield Soil: Response to Intermittent Aeration and Tetracycline Addition, Janet A. Atoyan, Andrew M. Staroscik, David R. Nelson, Erika L. Patenaude, David A. Potts, and José A. Amador

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Coordinate Nuclear Targeting of the FANCD2 and FANCI Proteins via a FANCD2 Nuclear Localization Signal, Rebecca A. Boisvert, Meghan A. Rego, Paul A. Azzinaro, Maurizio Mauro, and Niall G. Howlett

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Thalassiosira spp. Community Composition Shifts in Response to Chemical and Physical Forcing in the Northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Traci L. Haddock, Susanne Menden-Deuer, Eric G. Roy, Mark L. Wells, and Bethany D. Jenkins

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Towards Independent Particle Reconstruction from Cryogenic Transmission Electron Microscopy, W. Lewis Collier, Jean Yves Hervé, and Lenore Martin

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Application of IgG-Derived Natural Treg Epitopes (IgG Tregitopes) to Antigen-Specific Tolerance Induction in a Murine Model of Type 1 Diabetes, Leslie P. Cousens, Yan Su, Elizabeth McClaine, Xin Li, Frances Terry, Robert Smith, Jinhee Lee, William Martin, David W. Scott, and Anne S. De Groot

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Do Tregitopes have the potential to impact the current treatment landscape of autoimmune diseases?, Anne S. De Groot

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Low immunogenicity predicted for emerging avian-origin H7N9, Anne S. De Groot, Matthew Ardito, Frances Terry, Lauren Levitz, Ted Ross, Leonard Moise, and William Martin

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Tregitope Peptides: The Active Pharmaceutical Ingredient of IVIG?, Anne S. De Groot, Leslie Cousens, Federico Mingozzi, and William Martin

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Making Vaccines "On Demand", Anne S. De Groot, Leo Einck, Leonard Moise, Michael Chambers, John Ballantyne, Robert W. Malone, Matthew Ardito, and William Martin

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Beyond humanization and de-immunization: tolerization as a method for reducing the immunogenicity of biologics, Anne S. De Groot, Frances Terry, Leslie Cousens, and William Martin

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Computational Vaccinology and the ICoVax 2012 Workshop, Yongqun He, Zhiwei Cao, Anne S. De Groot, Vladimir Brusic, Christian Schönbach, and Nikolai Petrovsky

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Modulation of CD8+ T cell responses to AAV vectors with IgG-derived MHC class II epitopes, Daniel J. Hui, Etiena Banser-Tschakarjan, Yifeng Chen, Robert J. Davidson, George Buchlis, Mustafa Yazicioglu, Gary C. Pien, Jonathan D. Finn, Virginia Haurigot, Alex Tai, David W. Scott, Leslie P. Cousens, Shangzhen Zhou, Anne S. De Groot, and Federico Mingozzi

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Epitope Recognition in HLA-DR3 Transgenic Mice Immunized to TSH-R Protein or Peptides, Hidefumi Inaba, Leonard Moise, William Martin, Anne S. De Groot, Joe Desrosiers, Ryan Tassone, George Buchman, Takashi Akamizu, and Leslie J. De Groot

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T-cell dependent immunogenicity of protein therapeutics: Preclinical assessment and mitigation, Vibha Jawa, Leslie P. Cousens, Michel Awwad, Eric Wakshull, Harald Kropshofer, and Anne S. De Groot

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Probiotic Strains for Shellfish Aquaculture: Protection of Eastern Oyster, Crassostrea virginica, Larvae and Juveniles Againsl Bacterial Challenge, Murni Karim, Wenjing Zhao, David C. Rowley, David R. Nelson, and Marta Gomez-Chiarri