Submissions from 2020
Stavudine exposure results in developmental abnormalities by causing DNA damage, inhibiting cell proliferation and inducing apoptosis in mouse embryos, Rui-Fang Ao, Yu-Xiang Liang, Xiao-Qing Liu, Kui Tan, Xiaoling Wang, Dan Liu, Ting Zhang, Gongqin Sun, and Jun Xie
Heterogeneity of Dengue Illness in Community-Based Prospective Study, Iquitos, Peru, William H. Elson, Robert C. Reiner, Crystyan Siles, Isabel Bazan, Stalin Vilcarromero, Amy R. Riley-Powell, Ania B. Kawiecki, Helvio Astete, Robert D. Hontz, Chris M. Barker, Gonzalo M. Vazquez-Prokopec, Amy C. Morrison, Thomas W. Scott, John P. Elder, Alan L. Rothman, and Valerie A. Paz-Soldan
Tiamulin-Resistant Mutants of the Thermophilic Bacterium Thermus thermophilus, Erin E. Killeavy, Gerwald Jogl, and Steven T. Gregory
Tn-Seq reveals hidden complexity in the utilization of host-derived glutathione in Francisella tularensis, Kathryn M. Ramsey, Hannah E. Ledvina, Tenayaann M. Tresko, Jamie M. Wandzilak, Catherine A. Tower, Thomas A. Tallo, Caroline E. Schramm, S. Brook Peterson, Shawn J. Skerrett, Joseph D. Mougous, and Simon L. Dove
Novel multiparameter correlates of Coxiella burnetii infection and vaccination identified by longitudinal deep immune profiling, P. M. Reeves, S. Raju Paul, L. Baeten, Y. Yi, J. Hess, D. Sobell, A. Scholzen, A. Garritsen, Anne S. De Groot, Leonard Moise, T. Brauns, R. Bowen, A. E. Sluder, and M. C. Poznansky
Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection, Alan L. Rothman and Et Al
Analysis of cell-associated DENV RNA by oligo(dT) primed 5’ capture scRNAseq, Mark A. Sanborn, Tao Li, Kaitlin Victor, Hayden Siegfried, Christian Fung, Alan L. Rothman, Anon Srikiatkhachorn, Stefan Fernandez, Damon Ellison, Richard G. Jarman, Heather Friberg, Irina Maljkovic Berry, Jeffrey R. Currier, and Adam T. Waickman
A distinct role for recombination repair factors in an early cellular response to transcription–replication conflicts, Xin Shao, Amalie M. Joergensen, Niall G. Howlett, Michael Lisby, and Vibe H. Oestergaard
Application of a Biphasic Mathematical Model of Cancer Cell Drug Response for Formulating Potent and Synergistic Targeted Drug Combinations to Triple Negative Breast Cancer Cells, Jinyan Shen, Li Li, Niall G. Howlett, Paul S. Cohen, and Gongqin Sun
Biphasic Mathematical Model of Cell–Drug Interaction That Separates Target-Specific and Off-Target Inhibition and Suggests Potent Targeted Drug Combinations for Multi-Driver Colorectal Cancer Cells, Jinyan Shen, Li Li, Tao Yang, Paul S. Cohen, and Gongqin Sun
Submissions from 2019
Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants, Benjamin Gabriel, Carey Medin, Jeremiah Alves, Ruth Nduati, Rose Kerubo Bosire, Dalton Wamalwa, Carey Farquhar, Grace John-Steward, and Barbara L. Lohman-Payne
Multi-antigen Vaccination With Simultaneous Engagement of the OX40 Receptor Delays Malignant Mesothelioma Growth and Increases Survival in Animal Models, Peter R. Hoffmann, Fukun W. Hoffmann, Thomas A. Premeaux, Tsuyoshi Fujita, Elisa Soprana, Maddalena Panigada, Glen M. Chew, Guilhem Richard, Pooja Hindocha, Mark Menor, Vedbar S. Khadka, Youping Deng, Leonard Moise, Lishomwa C. Ndhlovu, Antonio Siccardi, Andrew D. Weinberg, Anne S. De Groot, and Pietro Bertino
Planarity and out-of-plane vibrational modes of tryptophan and tyrosine in biomolecular modeling, Faramarz Joodaki, Lenore M. Martin, and Michael L. Greenfield
Immune escape and immune camouflage may reduce the efficacy of RTS,S vaccine in Malawi, Sundos Khan, Matthew Parrillo, Andres H. Gutierrez, Frances E. Terry, Leonard Moise, William D. Martin, and Anne S. De Groot
Evidence for activated Lck protein tyrosine kinase as the driver of proliferation in acute myeloid leukemia cell, CTV-1, Li Li, Yixin Cui, Jinyan Shen, Hannah Dobson, and Gongqin Sun
Ponatinib Inhibits Proliferation and Induces Apoptosis of Liver Cancer Cells, but Its Efficacy Is Compromised by Its Activation on PDK1/Akt/mTOR Signaling, Chang Liu, Xiuli Mu, Xuan Wang, Chan Zhang, Lina Zhang, Baofeng Yu, and Gongqin Sun
Construction of a cDNA library and preliminary analysis of the expressed sequence tags of the earthworm Eisenia fetida (Savigny, 1826), Chang Liu, Xuan Wang, Jiu-Bo Tian, Pei-Yuan Ma, Fan-Xiu Meng, Qi Zhang, Bao-Feng Yu, Rui Guo, Zhi-Zhen Liu, Hai-Long Wang, Jun Xie, Niu-Llang Cheng, Jian-Hua Wang, Bo Niu, and Gongqin Sun
Draft Genome Sequence of the Putative Marine Pathogen Thalassobius sp. I31.1, Hilary J. Ranson, Jason LaPorte, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley
Longitudinal Analysis of Memory B and T Cell Responses to Dengue Virus in a 5-Year Prospective Cohort Study in Thailand, Luis A. Sánchez-Vargas, Sonia Kounlavouth, Madison L. Smith, Kathryn B. Anderson, Anon Srikiatkhachorn, Damon W. Ellison, Jeffrey R. Currier, Timothy P. Endy, Anuja Mathew, and Alan L. Rothman
Dengue illness impacts daily human mobility patterns in Iquitos, Peru, Kathryn L. Schaber, Valerie A. Paz-Soldan, Amy C. Morrison, William HD Elson, Alan L. Rothman, Christopher N. Mores, Helvio Astete-Vega, Thomas W. Scott, Lance A. Waller, Uriel Kitron, John P. Elder, Christopher M. Barker, T. Alex Perkins, and Gonzalo M. Vazquez-Prokopec
Promiscuous Coxiella burnetii CD4 Epitope Clusters Associated With Human Recall Responses Are Candidates for a Novel T-Cell Targeted Multi-Epitope Q Fever Vaccine, Anja Scholzen, Guilhem Richard, Leonard Moise, Laurie A. Baeten, Patrick M. Reeves, William D. Martin, Timothy A. Brauns, Christine M. Boyle, Susan Raju Paul, Richard Bucala, Richard A. Bowen, Anja Garritsen, Anne S. De Groot, Ann E. Sluder, and Mark C. Poznansky
Drug Sensitivity Screening and Targeted Pathway Analysis Reveal a Multi-Driver Proliferative Mechanism and Suggest a Strategy of Combination Targeted Therapy for Colorectal Cancer Cells, Jinyan Shen, Li Li, Tao Yang, Niuliang Cheng, and Gongqin Sun
Bacterial Community Dynamics in an Oyster Hatchery in Response to Probiotic Treatment, Rebecca J. Stevick, Saebom Sohn, Tejashree H. Modak, David R. Nelson, David C. Rowley, Karin Tammi, Roxanna Smolowitz, Kathryn Markey Lundgren, Anton F. Post, and Marta Gomez-Chiarri
Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100, Laura E. Williams, Nicole Cullen, Joseph A. DeGiorgis, Karla J. Martinez, Justina Mellone, Molly Oser, Jing Wang, and Ying Zhang
Submissions from 2018
Structural versatility that serves the function of the HRD motif in the catalytic loop of protein tyrosine kinase, Src, Yixin Cui and Gongqin Sun
Upregulation of HLA‐E by dengue and not Zika viruses, Elena Drews, Awadalkareem Adam, Phone Htoo, Elizabeth Townsley, and Anuja Mathew
An Essential Staphylococcus Aureus Cell Division Protein Directly Regulates FtsZ Dynamics, Prahathees J. Eswara, Robert S. Brzozowski, Marissa G. Viola, Gianni Graham, Catherine Spanoudis, Catherine Trebino, Jyoti Jha, Joseph I. Aubee, Karl M. Thompson, Jodi L. Camberg, and Kumaran S. Ramamurthi
Protective versus pathologic pre-exposure cytokine profiles in dengue virus infection, Heather Friberg, Coreen M. Beaumier, Sangshin Park, Pamela Pazoles, Timothy P. Endy, Anuja Mathew, Jeffrey R. Currier, Richard G. Jarman, Kathryn B. Anderson, Steve Hatch, Stephen J. Thomas, and Alan L. Rothman
Histone Methylation by SETD1A Protects Nascent DNA through the Nucleosome Chaperone Activity of FANCD2, Martin R. Higgs, Koichi Sato, John J. Reynolds, Shabana Begum, Rachel Bayley, Amalia Goula, Audrey Vernet, Karissa L. Paquin, David G. Skalnik, Wataru Kobayashi, Minoru Takata, Niall G. Howlett, Hitoshi Kurumizaka, Hiroshi Kimura, and Grant S. Stewart
Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio Parahaemolyticus, Jason P. LaPorte, Edward J. Spinard, Marta Gomez-Chiarri, David C. Rowley, John J. Mekalanos, and David R. Nelson
High background in ELISpot assays is associated with elevated levels of immune activation in HIV‐1‐seronegative individuals in Nairobi, Amy Y. Liu, Stephen C. De Rosa, Brandon L. Guthrie, Robert Y. Choi, Rose Kerubo-Bosire, Barbara A. Richardson, James Kiarie, Carey Farquhar, and Barbara L. Lohman-Payne
HIV-exposed uninfected infants: elevated cord blood Interleukin 8 (IL-8) is significantly associated with maternal HIV infection and systemic IL-8 in a Kenyan cohort, Barbara L. Lohman-Payne, Benjamin Gabriel, Sangshin Park, Dalton Wamalwa, Elizabeth Maleche-Obimbo, Carey Farquhar, Rose Kerubo Bosire, and Grace John-Steward
Community clinic-based lifestyle change for prevention of metabolic syndrome: Rationale, design and methods of the ‘Vida Sana/healthy life’ program, Patricia Markham Risica, Megan McCarthy, Katherine Barry, Susan P. Oliverio, and Anne S. De Groot
T cell epitope engineering: an avian H7N9 influenza vaccine strategy for pandemic preparedness and response, Leonard Moise, Bethany M. Biron, Christine M. Boyle, Nese Kurt Yilmaz, Hyesun Jang, Celia Schiffer, Ted M. Ross, William D. Martin, and Anne S. De Groot
Use of structural equation models to predict dengue illness phenotype, Sangshin Park, Anon Srikiatkhachorn, Siripen Kalayanarooj, Louis Macareo, Sharone Green, Jennifer F. Friedman, and Alan L. Rothman
Evolution of the Natural Transformation Protein, ComEC, in Bacteria, Zachary T. Pimentel and Ying Zhang
Draft Genome Sequence of the Putative Marine Pathogen Aquimarina sp. Strain I32.4, Hilary J. Ranson, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley
Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz
Submissions from 2017
Dengue virus induces mitochondrial elongation through impairment of Drp1-triggered mitochondrial fission, Vincent Barbier, Diane Lang, Dierra Valois, Alan L. Rothman, and Carey L. Medin
An immunoinformatics-derived DNA vaccine encoding human class II T cell epitopes of Ebola virus, Sudan virus, and Venezuelan equine encephalitis virus is immunogenic in HLA transgenic mice, Callie E. Bounds, Frances E. Terry, Leonard Moise, Drew Hannaman, William D. Martin, Anne S. De Groot, John J. Suschak, Lesley C. Dupuy, and Connie S. Schmaljohn
Knowledge, attitudes, practices and willingness to vaccinate in preparation for the introduction of HPV vaccines in Bamako, Mali, Anne S. De Groot, Karamoko Tounkara, Mali Rochas, Sarah Beseme, Shahla Yekta, Fanta Siby Diallo, J. Kathleen Tracy, Ibrahima Teguete, and Ousmane A. Koita
A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation, Keith Dufault-Thompson, Huahua Jian, Ruxue Cheng, Jiefu Li, Fengping Wang, and Ying Zhang
Composition and Function of Mutant Swi/Snf Complexes, Arnob Dutta, Mihaela Sardiu, Madelaine Gogol, Joshua Gilmore, Daoyong Zhang, Laurence Florens, Susan M. Abmayr, Michael P. Washburn, and Jerry L. Workman
T‐cell epitope content comparison (EpiCC) of swine H1 influenza A virus hemagglutinin, Andres H. Gutiérrez, Vicki J. Rapp-Gabrielson, Frances E. Terry, Crystal L. Loving, Leonard Moise, William D. Martin, and Anne S. De Groot
Proteomic responses to elevated ocean temperature in ovaries of the ascidian Ciona intestinalis, Chelsea E. Lopez, Hannah C. Sheehan, David A. Vierra, Paul A. Azzinaro, Thomas H. Meedel, Niall G. Howlett, and Steven Q. Irvine
Selectable marker independent transformation of recalcitrant maize inbred B73 and sorghum P898012 mediated by morphogenic regulators BABY BOOM and WUSCHEL2, Muruganatham Mookkan, Kimberly Nelson-Vasilchik, Joel Hague, Zhanyuan J. Zhang, and Albert P. Kausch
Isocitrate Dehydrogenase Mutation in Vibrio anguillarum Results in Virulence Attenuation and Immunoprotection in Rainbow Trout (Oncorhynchus mykiss), Xiangyu Mou, Edward J. Spinard, Shelby L. Hillman, and David R. Nelson
Defining Genetic Fitness Determinants and Creating Genomic Resources for an Oral Pathogen, Ajay M. Narayanan, Matthew M. Ramsey, Apollo Stacy, and Marvin Whiteley
Modulation of the Fanconi anemia pathway via chemically induced changes in chromatin structure, David A. Vierra, Jada L. Garzon, Meghan A. Rego, Morganne M. Adroved, Maurizio Mauro, and Niall G. Howlett
Proteolysis-Dependent Remodeling of the Tubulin Homolog FtsZ at the Division Septum in Escherichia coli, Marissa G. Viola, Christopher J. LaBreck, Joseph Conti, and Jodi L. Camberg
A humanized mouse model identifies key amino acids for low immunogenicity of H7N9 vaccines, Yamato Wada, Arnone Nithichanon, Eri Nobusawa, Leonard Moise, William D. Martin, Norio Yamamoto, Kazutaka Terahara, Haruhisa Hagiwara, Takato Odagiri, Masato Tashiro, Ganjana Lertmemongkolchai, Haruko Takeyama, Anne S. De Groot, Manabu Ato, and Yoshimasa Takahashi
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz
Submissions from 2016
Advancing Crop Transformation in the Era of Genome Editing, Fredy Altpeter, Nathan M. Springer, Laura E. Bartley, Ann E. Blechl, Thomas P. Brutnell, Vitaly Citovsky, Liza J. Conrad, Stanton B. Gelvin, David P. Jackson, Albert P. Kausch, Peggy G. Lemaux, June I. Medford, Martha L. Orozco-Cárdenas, David M. Tricoli, Joyce Van Eck, Daniel F. Voytas, Virginia Walbot, Kan Wang, Zhanyuan J. Zhang, and C. Neal Stewart Jr.
Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida, Javier Dubert, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, Jesus L. Romalde, and Juan L. Barja
Contributions of Tropodithietic Acid and Biofilm Formation to the Probiotic Activity of Phaeobacter Inhibens, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson
In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model, Andres H. Gutiérrez, Crystal Loving, Leonard Moise, Frances E. Terry, Susan L. Brockmeier, Holly R. Hughes, William D. Martin, and Anne S. De Groot
Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize, Andrew P. Hayward, Maria A. Moreno, Thomas P. Howard III, Joel Hague, Kimberly Nelson, Christopher Heffelfinger, Sandra Romero, Albert P. Kausch, Gaétan Glauser, Ivan F. Acosta, John P. Mottinger, and Stephen L. Dellaporta
Thyrotropin Receptor Epitope and Human Leukocyte Antigen in Graves’ Disease, Hidefumi Inaba, Leslie J. De Groot, and Takashi Akamizu
In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L., Albert P. Kausch, Michael Tilelli, Joel Hague, Christopher Heffelfinger, David Cunha, Maria Moreno, Stephen L. Dellaporta, and Kimberly Nelson
Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease), Linda Kessner, Edward Spinard, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson
Uropathogenic Escherichia coli Metabolite-Dependent Quiescence and Persistence May Explain Antibiotic Tolerance during Urinary Tract Infection, Mary P. Leatham-Jensen, Matthew E. Mokszycki, David C. Rowley, Robert Deering, Jodi L. Camberg, Evgeni V. Sokurenko, Veronika L. Tchesnokova, Jakob Frimodt-Møller, Karen A. Krogfelt, Karen Leth Nielsen, Niels Frimodt-Møller, Gongqin Sun, and Paul S. Cohen
Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus, Edward J. Spinard, Javier Dubert, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja
The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine
PSAMM: A Portable System for the Analysis of Metabolic Models, Jon Lund Steffensen, Keith Dufault-Thompson, and Ying Zhang
The PTEN Phosphatase Functions Cooperatively with the Fanconi Anemia Proteins in DNA Crosslink Repair, Elizabeth A. Vuono, Ananda Mukherjee, David A. Vierra, Morganne M. Adroved, Charlotte Hodson, Andrew J. Deans, and Niall G. Howlett
Submissions from 2015
Structure-Based Redesign of Lysostaphin Yields Potent Antistaphylococcal Enzymes that Evade Immune Cell Surveillance, Kristina Blazanovic, Hongliang Zhao, Yoonjoo Choi, Wen Li, Regina S. Salvat, Daniel C. Osipovitch, Jennifer Fields, Leonard Moise, Brett L. Berwin, Steven N. Fiering, Chris Bailey-Kellogg, and Karl E. Griswold
Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Joselynn R. Wallace, Adam I. Darer, Samua Jean-Chales, and Bethany D. Jenkins
C3d adjuvant effects are mediated through the activation of C3d-specific autoreactive T cells, Anne S. De Groot, Ted M. Ross, Lauren Levitz, Timothy J. Messitt, Ryan Tassone, Christine M. Boyle, Amber J. Vincelli, Leonard Moise, William Martin, and Paul M. Knopf
Collagen Gel Formation in the Presence of a Carbon Nanobrush, George W. Dombi, Kaushalkumar Purohit, Lenore M. Martin, and Sze C. Yang
An immunoinformatic approach for identification of Trypanosoma cruzi HLA-A2-restricted CD8+ T cell epitopes, Christopher S. Eickhoff, Daniel Van Aartsen, Francis E. Terry, Sheba K. Meymandi, Mahmoud M. Traina, Salvador Hernandez, William D. Martin, Leonard Moise, Anne S. De Groot, and Daniel F. Hoft
Designing AMPed: The Practical Antimicrobial Peptide Editable Database, Tripti Garg, George Konstantinidis, Joan Peckham, Admir Monteiro, Roxanne LaCroix, and Lenore M. Martin
Development and Validation of an Epitope Prediction Tool for Swine (PigMatrix) Based on the Pocket Profile Method, Andres H. Gutiérrez, William D. Martin, Chris Bailey-Kellogg, Frances Terry, Leonard Moise, and Anne S. De Groot
Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95, Meagan Hamblin, Edward Spinard, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley
Genomic Characterization of Interspecific Hybrids and an Admixture Population Derived from Panicum amarum × P. virgatum, Christopher Heffelfinger, Adam P. Deresienski, Kimberly A. Nelson, Maria A. Moreno, Joel P. Hague, Stephen L. Dellaporta, and Albert P. Kausch
Preclinical development of HIvax: human survivin Highly Immunogenic vaccines, Peter R. Hoffmann, Maddalena Panigada, Elisa Soprana, Francis Terry, Ivo Sah Bandar, Andrea Napolitano, Aaron H. Rose, Fukun W. Hoffmann, Lishomwa C. Ndhlovu, Mahdi Belcaid, Lenny Moise, Anne S. De Groot, Michele Carbone, Giovanni Gaudino, Takashi Matsui, Antonio Siccardi, and Pietro Bertino
8th vaccine renaissance: A creative nexus for vaccine developers, Heather Johnson, Lenny Moise, Austin Menge, Sarah Beseme, and Anne S. De Groot
Comparing Structures of Two Antimicrobial Peptides Using a Self-Organized Mapping Approach, Faramarz Joodaki, Preston Steele, Lenore M. Martin, and Michael L. Greenfield
Effects of CO2 on Growth Rate, C:N:P, and Fatty Acid Composition of Seven Marine Phytoplankton Species, Andrew L. King, Bethany D. Jenkins, Joselynn R. Wallace, Yuan Liu, Gary H. Wikfors, Lisa M. Milke, and Shannon L. Meseck
H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance, Rui Liu, Leonard Moise, Ryan Tassone, Andres H. Gutierrez, Francis E. Terry, Kotou Sangare, Matthew T. Ardito, William D. Martin, and Anne S. De Groot
T Cell Epitope Redundancy: Cross-conservation of the TCR face between Pathogens and Self and its Implications for Vaccines and Auto-immunity, Leonard Moise, Sarah Beseme, Ryan Tassone, Rui Liu, Farzana Kibria, Francis Terry, William Martin, and Anne S. De Groot
iVax: An integrated toolkit for the selection and optimization of antigens and the design of epitope-driven vaccines, Leonard Moise, Andres H. Gutierrez, Farzana Kibria, Rebecca Martin, Ryan Tassone, Rui Liu, Francis Terry, William Martin, and Anne S. De Groot
Escherichia coli EDL933 Requires Gluconeogenic Nutrients To Successfully Colonize the Intestines of Streptomycin-Treated Mice Precolonized with E. coli Nissle 1917, Silvia A. C. Schinner, Matthew E. Mokszycki, Jimmy Adediran, Mary Leatham-Jensen, and Paul S. Cohen
Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22, Edward Spinard, Linda Kessner, Marta Gomez-Chiarri, D. C. Rowley, and David R. Nelson
Time for T? Immunoinformatics addresses the challenges of vaccine design for neglected tropical and emerging infectious diseases, Francis E. Terry, Leonard Moise, Rebecca Martin, Melissa Torres, Nils Pilotte, Steven Williams, and Anne S. De Groot
Submissions from 2014
CHOPPI: a web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production, Chris Bailey-Kellogg, Andres H. Gutiérrez, Leonard Moise, Frances Terry, William D. Martin, and Anne S. De Groot
Profiling Gene Expression to Distinguish the Likely Active Diazotrophs from a Sea of Genetic Potential in Marine Sediments, S M. Brown and Bethany D. Jenkins
Location of Dual Sites in E. coli FtsZ Important for Degradation by ClpXP; One at the C-Terminus and One in the Disordered Linker, Jodi L. Camberg, Marissa G. Viola, Leslie Rea, Joel R. Hoskins, and Sue Wickner
Human leptospirosis in The Federated States of Micronesia: a hospital-based febrile illness survey, Susannah Colt, Boris I. Pavlin, Jacob L. Kool, Eliaser Johnson, Judith P. McCool, and Alistair J. Woodward
Tregitope: Immunomodulation Powerhouse, Leslie Cousens, Nader Najafian, William D. Martin, and Anne S. De Groot
Cross-conservation of T-cell epitopes: Now even more relevant to (H7N9) influenza vaccine design, Anne S. De Groot, Lenny Moise, Rui Liu, Andres H. Gutierrez, Frances Terry, Ousmane A. Koita, Ted M. Ross, and William Martin
Immune Camouflage: Relevance to Vaccine Design and Human Immunology, Anne S. De Groot, Leonard Moise, Rui Liu, Andres H. Gutierrez, Ryan Tassone, Chris Bailey-Kellogg, and William Martin
Meeting Report: Ocean ‘Omics Science, Technology and Cyberinfrastructure: Current Challenges and Future Requirements (August 20-23, 2013), Jack A. Gilbert, Gregory J. Dick, Bethany D. Jenkins, John Heidelberg, Eric Allen, Katherine R.M. Mackey, and Edward F. DeLong
Flexible and Scalable Genotyping-by-Sequencing Strategies for Population Studies, Christopher Heffelfinger, Christopher A. Fragoso, Maria A. Moreno, John D. Overton, John P. Mottinger, Hongyu Zhao, Joe Tohme, and Stephen L. Dellaporta
Integrated Assessment of Predicted MHC binding and Cross-conservation with Self Reveals Patterns of Viral Camouflage, Lu He, Anne S. DeGroot, Andres H. Gutierrez, William D. Martin, Lenny Moise, and Chris Bailey-Kellogg
Identification of the Maize Gravitropism Gene lazy plant1 by a Transposon-Tagging Genome Resequencing Strategy, Thomas P. Howard III, Andrew P. Hayward, Anthony Tordillos, Christopher Fragoso, Maria A. Moreno, Joe Tohme, Albert P. Kausch, John P. Mottinger, and Stephen L. Dellaporta
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans Through Transcriptome Sequencing, Patrick J. Keeling, Bethany D. Jenkins, Susanne Menden-Deuer, and et al
VaxCelerate II: Rapid development of a self-assembling vaccine for Lassa fever, Pierre Leblanc, Leonard Moise, Cybelle Luza, Kanawat Chantaralawan, Lynchy Lezeau, Jianping Yuan, Mary Field, Daniel Richer, Christine Boyle, William D. Martin, Jordan B. Fishman, Eric A. Berg, David Baker, Brandon Zeigler, Dale E. Mais, William Taylor, Russell Coleman, H. Shaw Warren, Jeffrey A. Gelfand, Anne S. De Groot, Timothy Brauns, and Mark C. Poznansky
HCV Epitope, Homologous to Multiple Human Protein Sequences, Induces a Regulatory T Cell Response in Infected Patients, Phyllis T. Losikoff, Sasmita Mishra, Francis Terry, Andres Gutierrez, Matt T. Ardito, Loren Fast, Martha Nevola, William D. Martin, Chris Bailey-Kellogg, Anne S. De Groot, and Stephen H. Gregory
Escherichia coli Pathotypes Occupy Distinct Niches in the Mouse Intestine, Jessica P. Meador, Matthew E. Caldwell, Paul S. Cohen, and Tyrrell Conway
Dendritic Cell-Mediated, DNA-Based Vaccination Against Hepatitis C Induces the Multi-Epitope-Specific Response of Humanized, HLA Transgenic Mice, Sasmita Mishra, Bianca J. Lavelle, Joe Desrosiers, Matt T. Ardito, Frances Terry, William D. Martin, Anne S. De Groot, and Stephen H. Gregory