Explore scholarly publications from the Department of Cell and Molecular Biology faculty at the University of Rhode Island.

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Submissions from 2019

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Draft Genome Sequence of the Putative Marine Pathogen Thalassobius sp. I31.1, Hilary J. Ranson, Jason LaPorte, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Longitudinal Analysis of Memory B and T Cell Responses to Dengue Virus in a 5-Year Prospective Cohort Study in Thailand, Luis A. Sánchez-Vargas, Sonia Kounlavouth, Madison L. Smith, Kathryn B. Anderson, Anon Srikiatkhachorn, Damon W. Ellison, Jeffrey R. Currier, Timothy P. Endy, Anuja Mathew, and Alan L. Rothman

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Topological Scoring of Protein Interaction Networks, Mihaela E. Sardiu, Joshua M. Gilmore, Brad D. Groppe, Arnob Dutta, Laurence Florens, and Michael P. Washburn

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Dengue illness impacts daily human mobility patterns in Iquitos, Peru, Kathryn L. Schaber, Valerie A. Paz-Soldan, Amy C. Morrison, William H.D. Elson, Alan L. Rothman, Christopher N. Mores, Helvio Astete-Vega, Thomas W. Scott, Lance A. Waller, Uriel Kitron, John P. Elder, Christopher M. Barker, T. Alex Perkins, and Gonzalo M. Vazquez-Prokopec

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Promiscuous Coxiella burnetii CD4 Epitope Clusters Associated With Human Recall Responses Are Candidates for a Novel T-Cell Targeted Multi-Epitope Q Fever Vaccine, Anja Scholzen, Guilhem Richard, Leonard Moise, Laurie A. Baeten, Patrick M. Reeves, William D. Martin, Timothy A. Brauns, Christine M. Boyle, Susan Raju Paul, Richard Bucala, Richard A. Bowen, Anja Garritsen, Anne S. De Groot, Ann E. Sluder, and Mark C. Poznansky

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The differential actions of clozapine and other antipsychotic drugs on the translocation of dopamine D2 receptors to the cell surface, Joseph M. Schrader, Craig M. Irving, J. Christopher Octeau, Joseph A. Christian, Timothy J. Aballo, Dean J. Kareemo, Joseph Conti, Jodi L. Camberg, J. Robert Lane, Jonathan A. Javitch, and Abraham Kovoor

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Drug Sensitivity Screening and Targeted Pathway Analysis Reveal a Multi-Driver Proliferative Mechanism and Suggest a Strategy of Combination Targeted Therapy for Colorectal Cancer Cells, Jinyan Shen, Li Li, Tao Yang, Niuliang Cheng, and Gongqin Sun

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Bacterial Community Dynamics in an Oyster Hatchery in Response to Probiotic Treatment, Rebecca J. Stevick, Saebom Sohn, Tejashree H. Modak, David R. Nelson, David C. Rowley, Karin Tammi, Roxanna Smolowitz, Kathryn Markey Lundgren, Anton F. Post, and Marta Gomez-Chiarri

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Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100, Laura E. Williams, Nicole Cullen, Joseph A. DeGiorgis, Karla J. Martinez, Justina Mellone, Molly Oser, Jing Wang, and Ying Zhang

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Microbial volatile compounds-induced cytotoxicity in the yeast Saccharomyces cerevisiae: The role of MAPK signaling and proteasome regulatory pathway, Pei Hsuan Wu, Yueh Lin Ho, Tzong Shiann Ho, Ching Han Chang, Je Chiuan Ye, Ching Han Wang, Huang Mo Sung, Hao Jen Huang, and Ching Chuan Liu

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MRPL35 Is Up-Regulated in Colorectal Cancer and Regulates Colorectal Cancer Cell Growth and Apoptosis, Litao Zhang, Peifen Lu, Lihong Yan, Lijun Yang, Yutao Wang, Junjun Chen, Jie Dai, Yahui Li, Zhiming Kang, Tao Bai, Yanfeng Xi, Jun Xu, Gongqin Sun, and Tao Yang

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The Probiotic Bacterium Phaeobacter inhibens Downregulates Virulence Factor Transcription in the Shellfish Pathogen Vibrio coralliilyticus by N-Acyl Homoserine Lactone Production, Wenjing Zhao, Tao Yuan, Christine Piva, Edward J. Spinard, Chrisitan W. Schuttert, David C. Rowley, and David R. Nelson

Submissions from 2018

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Multiplexed fluorospot for the analysis of dengue virus- And zika virus-specific and cross-reactive memory B cells, Awadalkareem Adam, Marcia Woda, Sonia Kounlavouth, Alan L. Rothman, Richard G. Jarman, Josephine P. Cox, Julie E. Ledgerwood, Gregory D. Gromowski, Jeffrey R. Currier, Heather Friberg, and Anuja Mathew

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Influenza-associated neurological complications during 2014–2017 in Taiwan, Li Wen Chen, Chao Ku Teng, Yi Shan Tsai, Jieh Neng Wang, Yi Fang Tu, Ching Fen Shen, and Ching Chuan Liu

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FtsA reshapes membrane architecture and remodels the Z-ring in Escherichia coli, Joseph Conti, Marissa G. Viola, and Jodi L. Camberg

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Structural versatility that serves the function of the HRD motif in the catalytic loop of protein tyrosine kinase, Src, Yixin Cui and Gongqin Sun

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Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial, Emma E. Davenport, Tiffany Amariuta, Maria Gutierrez-Arcelus, Kamil Slowikowski, Harm Jan Westra, Yang Luo, Ciyue Shen, Deepak A. Rao, Ying Zhang, Stephen Pearson, David Von Schack, Jean S. Beebe, Nan Bing, Sally John, Michael S. Vincent, Baohong Zhang, and Soumya Raychaudhuri

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Upregulation of HLA‐E by dengue and not Zika viruses, Elena Drews, Awadalkareem Adam, Phone Htoo, Elizabeth Townsley, and Anuja Mathew

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Using PSAMM for the curation and analysis of genome-scale metabolic models, Keith Dufault-Thompson, Jon Lund Steffensen, and Ying Zhang

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An Essential Staphylococcus Aureus Cell Division Protein Directly Regulates FtsZ Dynamics, Prahathees J. Eswara, Robert S. Brzozowski, Marissa G. Viola, Gianni Graham, Catherine Spanoudis, Catherine Trebino, Jyoti Jha, Joseph I. Aubee, Karl M. Thompson, Jodi L. Camberg, and Kumaran S. Ramamurthi

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Protective versus pathologic pre-exposure cytokine profiles in dengue virus infection, Heather Friberg, Coreen M. Beaumier, Sangshin Park, Pamela Pazoles, Timothy P. Endy, Anuja Mathew, Jeffrey R. Currier, Richard G. Jarman, Kathryn B. Anderson, Steve Hatch, Stephen J. Thomas, and Alan L. Rothman

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Thermus Thermophilus as a Model System for the Study of Ribosomal Antibiotic Resistance, Steven T. Gregory

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Activation of Peripheral T Follicular Helper Cells during Acute Dengue Virus Infection, Kirk Haltaufderhyde, Anon Srikiatkhachorn, Sharone Green, Louis Macareo, Sangshin Park, Siripen Kalayanarooj, Alan L. Rothman, and Anuja Mathew

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Histone Methylation by SETD1A Protects Nascent DNA through the Nucleosome Chaperone Activity of FANCD2, Martin R. Higgs, Koichi Sato, John J. Reynolds, Shabana Begum, Rachel Bayley, Amalia Goula, Audrey Vernet, Karissa L. Paquin, David G. Skalnik, Wataru Kobayashi, Minoru Takata, Niall G. Howlett, Hitoshi Kurumizaka, Hiroshi Kimura, and Grant S. Stewart

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Mass spectrometry-assisted identification of ADAMTS13-derived peptides presented on HLA-DR and HLA-DQ, Johana Hrodinová, Fabian C. Verbij, Paul H.P. Kaijen, Robin B. Hartholt, Floris van Alphen, Neubury Lardy, Anja ten Brinke, Karen Vanhoorelbeke, Pooja J. Hindocha, Anne S. De Groot, Alexander B. Meijer, Jan Voorberg, and Ivan Peyron

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Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio Parahaemolyticus, Jason P. LaPorte, Edward J. Spinard, Marta Gomez-Chiarri, David C. Rowley, John J. Mekalanos, and David R. Nelson

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High background in ELISpot assays is associated with elevated levels of immune activation in HIV‐1‐seronegative individuals in Nairobi, Amy Y. Liu, Stephen C. De Rosa, Brandon L. Guthrie, Robert Y. Choi, Rose Kerubo-Bosire, Barbara A. Richardson, James Kiarie, Carey Farquhar, and Barbara L. Lohman-Payne

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HIV-exposed uninfected infants: elevated cord blood Interleukin 8 (IL-8) is significantly associated with maternal HIV infection and systemic IL-8 in a Kenyan cohort, Barbara L. Lohman-Payne, Benjamin Gabriel, Sangshin Park, Dalton Wamalwa, Elizabeth Maleche-Obimbo, Carey Farquhar, Rose Kerubo Bosire, and Grace John-Steward

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Community clinic-based lifestyle change for prevention of metabolic syndrome: Rationale, design and methods of the ‘Vida Sana/healthy life’ program, Patricia Markham Risica, Megan McCarthy, Katherine Barry, Susan P. Oliverio, and Anne S. De Groot

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T cell epitope engineering: an avian H7N9 influenza vaccine strategy for pandemic preparedness and response, Leonard Moise, Bethany M. Biron, Christine M. Boyle, Nese Kurt Yilmaz, Hyesun Jang, Celia Schiffer, Ted M. Ross, William D. Martin, and Anne S. De Groot

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A simple in vitro gut model for studying the interaction between Escherichia coli and the intestinal commensal microbiota in cecal mucus, Matthew E. Mokszycki, Mary Leatham-Jensen, Jon L. Steffensen, Ying Zhang, Karen A. Krogfelt, Matthew E. Caldwell, Tyrrell Conway, and Paul S. Cohen

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Understanding the histone DNA repair code: H4K20me2 makes its mark, Karissa L. Paquin and Niall G. Howlett

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Use of structural equation models to predict dengue illness phenotype, Sangshin Park, Anon Srikiatkhachorn, Siripen Kalayanarooj, Louis Macareo, Sharone Green, Jennifer F. Friedman, and Alan L. Rothman

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Evolution of the Natural Transformation Protein, ComEC, in Bacteria, Zachary T. Pimentel and Ying Zhang

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Effects of the equimolarly mixed cationic–nonionic surfactants of didodecyldimethylammonium bromide and polyoxyethylene sorbitan monooleate 80 on serum proteins—spectroscopic study, Hua Qiao, Bo Li, Huichao Zhang, Dan Liu, Haipeng Diao, Gongqin Sun, and Jun Xie

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Draft Genome Sequence of the Putative Marine Pathogen Aquimarina sp. Strain I32.4, Hilary J. Ranson, Edward Spinard, Andrei Y. Chistoserdov, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz

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Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: PolyA+ selection versus rRNA depletion, Shanrong Zhao, Ying Zhang, Ramya Gamini, Baohong Zhang, and David Von Schack

Submissions from 2017

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Dengue virus induces mitochondrial elongation through impairment of Drp1-triggered mitochondrial fission, Vincent Barbier, Diane Lang, Dierra Valois, Alan L. Rothman, and Carey L. Medin

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An immunoinformatics-derived DNA vaccine encoding human class II T cell epitopes of Ebola virus, Sudan virus, and Venezuelan equine encephalitis virus is immunogenic in HLA transgenic mice, Callie E. Bounds, Frances E. Terry, Leonard Moise, Drew Hannaman, William D. Martin, Anne S. De Groot, John J. Suschak, Lesley C. Dupuy, and Connie S. Schmaljohn

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Knowledge, attitudes, practices and willingness to vaccinate in preparation for the introduction of HPV vaccines in Bamako, Mali, Anne S. De Groot, Karamoko Tounkara, Mali Rochas, Sarah Beseme, Shahla Yekta, Fanta Siby Diallo, J. Kathleen Tracy, Ibrahima Teguete, and Ousmane A. Koita

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A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation, Keith Dufault-Thompson, Huahua Jian, Ruxue Cheng, Jiefu Li, Fengping Wang, and Ying Zhang

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Composition and Function of Mutant Swi/Snf Complexes, Arnob Dutta, Mihaela Sardiu, Madelaine Gogol, Joshua Gilmore, Daoyong Zhang, Laurence Florens, Susan M. Abmayr, Michael P. Washburn, and Jerry L. Workman

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In vitro assembly of nucleosomes for binding/remodeling assays, Arnob Dutta and Jerry L. Workman

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Myeloid Leukemia Factor Acts in a Chaperone Complex to Regulate Transcription Factor Stability and Gene Expression, Jamie O. Dyer, Arnob Dutta, Madelaine Gogol, Vikki M. Weake, George Dialynas, Xilan Wu, Christopher Seidel, Ying Zhang, Laurence Florens, Michael P. Washburn, Susan M. Abmayr, and Jerry L. Workman

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T‐cell epitope content comparison (EpiCC) of swine H1 influenza A virus hemagglutinin, Andres H. Gutiérrez, Vicki J. Rapp-Gabrielson, Frances E. Terry, Crystal L. Loving, Leonard Moise, William D. Martin, and Anne S. De Groot

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Polytopic vaccination with a live-attenuated dengue vaccine enhances B-cell and T-cell activation, but not neutralizing antibodies, Taweewun Hunsawong, Sineewanlaya Wichit, Thipwipha Phonpakobsin, Yongyuth Poolpanichupatam, Chonticha Klungthong, Napaporn Latthiwongsakorn, Butsaya Thaisomboonsuk, Rawiwan Im-erbsin, In Kyu Yoon, Damon W. Ellison, Louis R. Macareo, Anon Srikiatkhachorn, Robert V. Gibbons, and Stefan Fernandez

Dynamics of Dengue Virus (DENV)-Specific B Cells in the Response to DENV Serotype 1 Infections, Using Flow Cytometry with Labeled Virions, Siripen Kalayanarooj, Alan L. Rothman, and Anon Srikiatkhachorn

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The protein chaperone ClpX targets native and non-native aggregated substrates for remodeling, disassembly, and degradation with ClpP, Christopher J. LaBreck, Shannon May, Marissa G. Viola, Joseph Conti, and Jodi L. Camberg

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Proteomic responses to elevated ocean temperature in ovaries of the ascidian Ciona intestinalis, Chelsea E. Lopez, Hannah C. Sheehan, David A. Vierra, Paul A. Azzinaro, Thomas H. Meedel, Niall G. Howlett, and Steven Q. Irvine

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A National Seroepidemiologic Survey of Pertussis among School Children in Taiwan, Chun Yi Lu, Hsing Chen Tsai, Yhu Chering Huang, Daniel Tsung Ning Huang, Ching Chuan Liu, and Li Min Huang

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Recent discoveries in the molecular pathogenesis of the inherited bone marrow failure syndrome Fanconi anemia, Nicholas E. Mamrak, Akiko Shimamura, and Niall G. Howlett

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Zika virus: The agent and its biology, with relevance to pathology, Carey L. Medin and Alan L. Rothman

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Selectable marker independent transformation of recalcitrant maize inbred B73 and sorghum P898012 mediated by morphogenic regulators BABY BOOM and WUSCHEL2, Muruganatham Mookkan, Kimberly Nelson-Vasilchik, Joel Hague, Zhanyuan J. Zhang, and Albert P. Kausch

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Isocitrate Dehydrogenase Mutation in Vibrio anguillarum Results in Virulence Attenuation and Immunoprotection in Rainbow Trout (Oncorhynchus mykiss), Xiangyu Mou, Edward J. Spinard, Shelby L. Hillman, and David R. Nelson

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Defining Genetic Fitness Determinants and Creating Genomic Resources for an Oral Pathogen, Ajay M. Narayanan, Matthew M. Ramsey, Apollo Stacy, and Marvin Whiteley

Activation of dengue virus-specific T cells modulates vascular endothelial growth factor receptor 2 expression, Jittraporn Rattanamahaphoom, Pornsawan Leaungwutiwong, Kriengsak Limkittikul, Nathamon Kosoltanapiwat, and Anon Srikaitkhachorn

Immune-mediated cytokine storm and its role in severe dengue, Anon Srikiatkhachorn, Anuja Mathew, and Alan L. Rothman

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Design, Synthesis, and Evaluation of Dasatinib–Amino Acid and Dasatinib–Fatty Acid Conjugates as Protein Tyrosine Kinase Inhibitors, Rakesh K. Tiwari, Alex Brown, Neda Sadeghiani, Amir Nasrolahi Shirazi, Jared Bolton, Amanda Tse, Gennady Verkhivker, Keykavous Parang, and Gongqin Sun

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Modulation of the Fanconi anemia pathway via chemically induced changes in chromatin structure, David A. Vierra, Jada L. Garzon, Meghan A. Rego, Morganne M. Adroved, Maurizio Mauro, and Niall G. Howlett

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Proteolysis-Dependent Remodeling of the Tubulin Homolog FtsZ at the Division Septum in Escherichia coli, Marissa G. Viola, Christopher J. LaBreck, Joseph Conti, and Jodi L. Camberg

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A humanized mouse model identifies key amino acids for low immunogenicity of H7N9 vaccines, Yamato Wada, Arnone Nithichanon, Eri Nobusawa, Leonard Moise, William D. Martin, Norio Yamamoto, Kazutaka Terahara, Haruhisa Hagiwara, Takato Odagiri, Masato Tashiro, Ganjana Lertmemongkolchai, Haruko Takeyama, Anne S. De Groot, Manabu Ato, and Yoshimasa Takahashi

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Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz

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Low-dose 5-fluorouracil sensitizes HepG2 cells to TRAIL through TRAIL receptor DR5 and survivin-dependent mechanisms, Lijun Yang, Yutao Wang, Haifeng Zheng, Dong Zhang, Xiangwei Wu, Gongqin Sun, and Tao Yang

Submissions from 2016

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Advancing Crop Transformation in the Era of Genome Editing, Fredy Altpeter, Nathan M. Springer, Laura E. Bartley, Ann E. Blechl, Thomas P. Brutnell, Vitaly Citovsky, Liza J. Conrad, Stanton B. Gelvin, David P. Jackson, Albert P. Kausch, Peggy G. Lemaux, June I. Medford, Martha L. Orozco-Cárdenas, David M. Tricoli, Joyce Van Eck, Daniel F. Voytas, Virginia Walbot, Kan Wang, Zhanyuan J. Zhang, and C. Neal Stewart Jr.

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Mycobacterium bovis Bacillus Calmette-Guérin vaccination-associated osteomyelitis, arthritis, and tenosynovitis on the thumb of a 2-year-old boy, E. C.H. Chang; C, C. Liu; and Y. C. Lee

Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children after Symptomatic Primary and Postprimary DENV Infection, Chia Ling Chen, Yueh Ying Wu, Chiou Feng Lin, Chih Feng Kuo, Chia Li Han, Shuying Wang, Woei Jer Chuang, Chiu Yueh Chen, Jiunn Jong Wu, Pei Jane Tsai, Ching Chuan Liu, and Yee Shin Lin

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Following the infection process of vibriosis in Manila clam (Ruditapes philippinarum) larvae through GFP-tagged pathogenic Vibrio species, Javier Dubert, David R. Nelson, Edward J. Spinard, Linda Kessner, Marta Gomez-Chiarri, Fiz da Costa, Susana Prado, and Juan L. Barja

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Reclassification of the larval pathogen for marine bivalves Vibrio tubiashii subsp. europaeus as Vibrio europaeus sp. nov, Javier Dubert, Jesús L. Romalde, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja

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Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida, Javier Dubert, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, Jesus L. Romalde, and Juan L. Barja

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Contributions of Tropodithietic Acid and Biofilm Formation to the Probiotic Activity of Phaeobacter Inhibens, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model, Andres H. Gutiérrez, Crystal Loving, Leonard Moise, Frances E. Terry, Susan L. Brockmeier, Holly R. Hughes, William D. Martin, and Anne S. De Groot

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Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize, Andrew P. Hayward, Maria A. Moreno, Thomas P. Howard III, Joel Hague, Kimberly Nelson, Christopher Heffelfinger, Sandra Romero, Albert P. Kausch, Gaétan Glauser, Ivan F. Acosta, John P. Mottinger, and Stephen L. Dellaporta

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Thyrotropin Receptor Epitope and Human Leukocyte Antigen in Graves’ Disease, Hidefumi Inaba, Leslie J. De Groot, and Takashi Akamizu

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In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L., Albert P. Kausch, Michael Tilelli, Joel Hague, Christopher Heffelfinger, David Cunha, Maria Moreno, Stephen L. Dellaporta, and Kimberly Nelson

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Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease), Linda Kessner, Edward Spinard, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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Uropathogenic Escherichia coli Metabolite-Dependent Quiescence and Persistence May Explain Antibiotic Tolerance during Urinary Tract Infection, Mary P. Leatham-Jensen, Matthew E. Mokszycki, David C. Rowley, Robert Deering, Jodi L. Camberg, Evgeni V. Sokurenko, Veronika L. Tchesnokova, Jakob Frimodt-Møller, Karen A. Krogfelt, Karen Leth Nielsen, Niels Frimodt-Møller, Gongqin Sun, and Paul S. Cohen

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FANCD2 Facilitates Replication through Common Fragile Sites, Advaitha Madireddy, Settapong T. Kosiyatrakul, Rebecca A. Boisvert, Emilia Herrera-Moyano, Maria L. García-Rubio, Jeannine Gerhardt, Elizabeth A. Vuono, Nichole Owen, Zi Yan, Susan Olson, Andrés Aguilera, Niall G. Howlett, and Carl L. Schildkraut

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State-of-the-art monitoring in treatment of dengue shock syndrome: a case series, Steven L. Moulton, Jane Mulligan, Anon Srikiatkhachorn, Siripen Kalayanarooj, Greg Z. Grudic, Sharone Green, Robert V. Gibbons, Gary W. Muniz, Carmen Hinojosa-Laborde, Alan L. Rothman, Stephen J. Thomas, and Victor A. Convertino

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A DUB-less step? Tighten up D-loop, Karissa L. Paquin, David A. Vierra, and Niall G. Howlett

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Probiotic Strains for Disease Management in Hatchery Larviculture of the Eastern Oyster Crassostrea virginica, Saebom Sohn, Kathryn Markey Lundgren, Karin Tammi, Murni Karim, Roxanna Smolowitz, David R. Nelson, David C. Rowley, and Marta Gómez-Chiarri

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Efficacy of Probiotics in Preventing Vibriosis in the Larviculture of Different Species of Bivalve Shellfish, Saebom Sohn, Kathryn Markey Lundgren, Karin Tammi, Roxanna Smolowitz, David R. Nelson, David C. Rowley, and Marta Gómez-Chiarri

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Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus, Edward J. Spinard, Javier Dubert, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja

Resolution of a Chikungunya outbreak in a prospective Cohort, Cebu, Philippines, 2012–2014, Anon Srikiatkhachorn, Maria Theresa Alera, Catherine B. Lago, Ilya A. Tac-An, Daisy Villa, Stefan Fernandez, Butsaya Thaisomboonsuk, Chonticha Klungthong, Jens W. Levy, John Mark Velasco, Vito G. Roque, Ananda Nisalak, Louis R. Macareo, and In Kyu Yoon

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The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine

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PSAMM: A Portable System for the Analysis of Metabolic Models, Jon Lund Steffensen, Keith Dufault-Thompson, and Ying Zhang

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The PTEN Phosphatase Functions Cooperatively with the Fanconi Anemia Proteins in DNA Crosslink Repair, Elizabeth A. Vuono, Ananda Mukherjee, David A. Vierra, Morganne M. Adroved, Charlotte Hodson, Andrew J. Deans, and Niall G. Howlett

Submissions from 2015

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Structure-Based Redesign of Lysostaphin Yields Potent Antistaphylococcal Enzymes that Evade Immune Cell Surveillance, Kristina Blazanovic, Hongliang Zhao, Yoonjoo Choi, Wen Li, Regina S. Salvat, Daniel C. Osipovitch, Jennifer Fields, Leonard Moise, Brett L. Berwin, Steven N. Fiering, Chris Bailey-Kellogg, and Karl E. Griswold

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Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Joselynn R. Wallace, Adam I. Darer, Samua Jean-Chales, and Bethany D. Jenkins

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The bacterial cell division regulators MinD and MinC form polymers in the presence of nucleotide, Joseph Conti, Marissa G. Viola, and Jodi L. Camberg

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C3d adjuvant effects are mediated through the activation of C3d-specific autoreactive T cells, Anne S. De Groot, Ted M. Ross, Lauren Levitz, Timothy J. Messitt, Ryan Tassone, Christine M. Boyle, Amber J. Vincelli, Leonard Moise, William Martin, and Paul M. Knopf

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Collagen Gel Formation in the Presence of a Carbon Nanobrush, George W. Dombi, Kaushalkumar Purohit, Lenore M. Martin, and Sze C. Yang

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Preferential depletion of zinc within Costa Rica upwelling dome creates conditions for zinc co-limitation of primary production, P. Dreux Chappell, Jagruti Vedmati, Karen E. Selph, Heather A. Cyr, Bethany D. Jenkins, Michael R. Landry, and James W. Moffett

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An immunoinformatic approach for identification of Trypanosoma cruzi HLA-A2-restricted CD8+ T cell epitopes, Christopher S. Eickhoff, Daniel Van Aartsen, Francis E. Terry, Sheba K. Meymandi, Mahmoud M. Traina, Salvador Hernandez, William D. Martin, Leonard Moise, Anne S. De Groot, and Daniel F. Hoft

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Designing AMPed: The Practical Antimicrobial Peptide Editable Database, Tripti Garg, George Konstantinidis, Joan Peckham, Admir Monteiro, Roxanne LaCroix, and Lenore M. Martin

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Development and Validation of an Epitope Prediction Tool for Swine (PigMatrix) Based on the Pocket Profile Method, Andres H. Gutiérrez, William D. Martin, Chris Bailey-Kellogg, Frances Terry, Leonard Moise, and Anne S. De Groot

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Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95, Meagan Hamblin, Edward Spinard, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Genomic Characterization of Interspecific Hybrids and an Admixture Population Derived from Panicum amarum × P. virgatum, Christopher Heffelfinger, Adam P. Deresienski, Kimberly A. Nelson, Maria A. Moreno, Joel P. Hague, Stephen L. Dellaporta, and Albert P. Kausch

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Preclinical development of HIvax: human survivin Highly Immunogenic vaccines, Peter R. Hoffmann, Maddalena Panigada, Elisa Soprana, Francis Terry, Ivo Sah Bandar, Andrea Napolitano, Aaron H. Rose, Fukun W. Hoffmann, Lishomwa C. Ndhlovu, Mahdi Belcaid, Lenny Moise, Anne S. De Groot, Michele Carbone, Giovanni Gaudino, Takashi Matsui, Antonio Siccardi, and Pietro Bertino

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Increase in fitness of streptococcus pneumoniae is associated with the severity of necrotizing pneumonia, Yu Chia Hsieh, Hsin Chi, Kuang Yi Chang, Shen Hao Lai, Jung Jung Mu, Kin Sun Wong, Ching Chuan Liu, Yi Chuan Huang, Hsiao Chuan Lin, Luan Yin Chang, Yhu Chering Huang, and Li Min Huang