Publications from the Department of Cell and Molecular Biology faculty at the University of Rhode Island.

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Submissions from 2017

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Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.), David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, and Philip Hugenholtz

Submissions from 2016

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Advancing Crop Transformation in the Era of Genome Editing, Fredy Altpeter, Nathan M. Springer, Laura E. Bartley, Ann E. Blechl, Thomas P. Brutnell, Vitaly Citovsky, Liza J. Conrad, Stanton B. Gelvin, David P. Jackson, Albert P. Kausch, Peggy G. Lemaux, June I. Medford, Martha L. Orozco-Cárdenas, David M. Tricoli, Joyce Van Eck, Daniel F. Voytas, Virginia Walbot, Kan Wang, Zhanyuan J. Zhang, and C. Neal Stewart Jr.

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Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida, Javier Dubert, Edward J. Spinard, David R. Nelson, Marta Gomez-Chiarri, Jesus L. Romalde, and Juan L. Barja

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Contributions of Tropodithietic Acid and Biofilm Formation to the Probiotic Activity of Phaeobacter Inhibens, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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In Vivo Validation of Predicted and Conserved T Cell Epitopes in a Swine Influenza Model, Andres H. Gutiérrez, Crystal Loving, Leonard Moise, Frances E. Terry, Susan L. Brockmeier, Holly R. Hughes, William D. Martin, and Anne S. De Groot

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Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize, Andrew P. Hayward, Maria A. Moreno, Thomas P. Howard III, Joel Hague, Kimberly Nelson, Christopher Heffelfinger, Sandra Romero, Albert P. Kausch, Gaétan Glauser, Ivan F. Acosta, John P. Mottinger, and Stephen L. Dellaporta

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Thyrotropin Receptor Epitope and Human Leukocyte Antigen in Graves’ Disease, Hidefumi Inaba, Leslie J. De Groot, and Takashi Akamizu

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In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L., Albert P. Kausch, Michael Tilelli, Joel Hague, Christopher Heffelfinger, David Cunha, Maria Moreno, Stephen L. Dellaporta, and Kimberly Nelson

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Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease), Linda Kessner, Edward Spinard, Marta Gomez-Chiarri, David C. Rowley, and David R. Nelson

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Uropathogenic Escherichia coli Metabolite-Dependent Quiescence and Persistence May Explain Antibiotic Tolerance during Urinary Tract Infection, Mary P. Leatham-Jensen, Matthew E. Mokszycki, David C. Rowley, Robert Deering, Jodi L. Camberg, Evgeni V. Sokurenko, Veronika L. Tchesnokova, Jakob Frimodt-Møller, Karen A. Krogfelt, Karen Leth Nielsen, Niels Frimodt-Møller, Gongqin Sun, and Paul S. Cohen

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Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus, Edward J. Spinard, Javier Dubert, David R. Nelson, Marta Gomez-Chiarri, and Juan L. Barja

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The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine

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PSAMM: A Portable System for the Analysis of Metabolic Models, Jon Lund Steffensen, Keith Dufault-Thompson, and Ying Zhang

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The PTEN Phosphatase Functions Cooperatively with the Fanconi Anemia Proteins in DNA Crosslink Repair, Elizabeth A. Vuono, Ananda Mukherjee, David A. Vierra, Morganne M. Adroved, Charlotte Hodson, Andrew J. Deans, and Niall G. Howlett

Submissions from 2015

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Structure-Based Redesign of Lysostaphin Yields Potent Antistaphylococcal Enzymes that Evade Immune Cell Surveillance, Kristina Blazanovic, Hongliang Zhao, Yoonjoo Choi, Wen Li, Regina S. Salvat, Daniel C. Osipovitch, Jennifer Fields, Leonard Moise, Brett L. Berwin, Steven N. Fiering, Chris Bailey-Kellogg, and Karl E. Griswold

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Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Joselynn R. Wallace, Adam I. Darer, Samua Jean-Chales, and Bethany D. Jenkins

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The bacterial cell division regulators MinD and MinC form polymers in the presence of nucleotide, Joseph Conti, Marissa G. Viola, and Jodi L. Camberg

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C3d adjuvant effects are mediated through the activation of C3d-specific autoreactive T cells, Anne S. De Groot, Ted M. Ross, Lauren Levitz, Timothy J. Messitt, Ryan Tassone, Christine M. Boyle, Amber J. Vincelli, Leonard Moise, William Martin, and Paul M. Knopf

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Collagen Gel Formation in the Presence of a Carbon Nanobrush, George W. Dombi, Kaushalkumar Purohit, Lenore M. Martin, and Sze C. Yang

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An immunoinformatic approach for identification of Trypanosoma cruzi HLA-A2-restricted CD8+ T cell epitopes, Christopher S. Eickhoff, Daniel Van Aartsen, Francis E. Terry, Sheba K. Meymandi, Mahmoud M. Traina, Salvador Hernandez, William D. Martin, Leonard Moise, Anne S. De Groot, and Daniel F. Hoft

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Designing AMPed: The Practical Antimicrobial Peptide Editable Database, Tripti Garg, George Konstantinidis, Joan Peckham, Admir Monteiro, Roxanne LaCroix, and Lenore M. Martin

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Development and Validation of an Epitope Prediction Tool for Swine (PigMatrix) Based on the Pocket Profile Method, Andres H. Gutiérrez, William D. Martin, Chris Bailey-Kellogg, Frances Terry, Leonard Moise, and Anne S. De Groot

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Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95, Meagan Hamblin, Edward Spinard, Marta Gomez-Chiarri, David R. Nelson, and David C. Rowley

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Genomic Characterization of Interspecific Hybrids and an Admixture Population Derived from Panicum amarum × P. virgatum, Christopher Heffelfinger, Adam P. Deresienski, Kimberly A. Nelson, Maria A. Moreno, Joel P. Hague, Stephen L. Dellaporta, and Albert P. Kausch

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Preclinical development of HIvax: human survivin Highly Immunogenic vaccines, Peter R. Hoffmann, Maddalena Panigada, Elisa Soprana, Francis Terry, Ivo Sah Bandar, Andrea Napolitano, Aaron H. Rose, Fukun W. Hoffmann, Lishomwa C. Ndhlovu, Mahdi Belcaid, Lenny Moise, Anne S. De Groot, Michele Carbone, Giovanni Gaudino, Takashi Matsui, Antonio Siccardi, and Pietro Bertino

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8th vaccine renaissance: A creative nexus for vaccine developers, Heather Johnson, Lenny Moise, Austin Menge, Sarah Beseme, and Anne S. De Groot

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Comparing Structures of Two Antimicrobial Peptides Using a Self-Organized Mapping Approach, Faramarz Joodaki, Preston Steele, Lenore M. Martin, and Michael L. Greenfield

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Effects of CO2 on Growth Rate, C:N:P, and Fatty Acid Composition of Seven Marine Phytoplankton Species, Andrew L. King, Bethany D. Jenkins, Joselynn R. Wallace, Yuan Liu, Gary H. Wikfors, Lisa M. Milke, and Shannon L. Meseck

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H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance, Rui Liu, Leonard Moise, Ryan Tassone, Andres H. Gutierrez, Francis E. Terry, Kotou Sangare, Matthew T. Ardito, William D. Martin, and Anne S. De Groot

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T Cell Epitope Redundancy: Cross-conservation of the TCR face between Pathogens and Self and its Implications for Vaccines and Auto-immunity, Leonard Moise, Sarah Beseme, Ryan Tassone, Rui Liu, Farzana Kibria, Francis Terry, William Martin, and Anne S. De Groot

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iVax: An integrated toolkit for the selection and optimization of antigens and the design of epitope-driven vaccines, Leonard Moise, Andres H. Gutierrez, Farzana Kibria, Rebecca Martin, Ryan Tassone, Rui Liu, Francis Terry, William Martin, and Anne S. De Groot

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Escherichia coli EDL933 Requires Gluconeogenic Nutrients To Successfully Colonize the Intestines of Streptomycin-Treated Mice Precolonized with E. coli Nissle 1917, Silvia A. C. Schinner, Matthew E. Mokszycki, Jimmy Adediran, Mary Leatham-Jensen, and Paul S. Cohen

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Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22, Edward Spinard, Linda Kessner, Marta Gomez-Chiarri, D. C. Rowley, and David R. Nelson

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Time for T? Immunoinformatics addresses the challenges of vaccine design for neglected tropical and emerging infectious diseases, Francis E. Terry, Leonard Moise, Rebecca Martin, Melissa Torres, Nils Pilotte, Steven Williams, and Anne S. De Groot

Submissions from 2014

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CHOPPI: a web tool for the analysis of immunogenicity risk from host cell proteins in CHO-based protein production, Chris Bailey-Kellogg, Andres H. Gutiérrez, Leonard Moise, Frances Terry, William D. Martin, and Anne S. De Groot

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Profiling Gene Expression to Distinguish the Likely Active Diazotrophs from a Sea of Genetic Potential in Marine Sediments, S M. Brown and Bethany D. Jenkins

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Location of Dual Sites in E. coli FtsZ Important for Degradation by ClpXP; One at the C-Terminus and One in the Disordered Linker, Jodi L. Camberg, Marissa G. Viola, Leslie Rea, Joel R. Hoskins, and Sue Wickner

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Human leptospirosis in The Federated States of Micronesia: a hospital-based febrile illness survey, Susannah Colt, Boris I. Pavlin, Jacob L. Kool, Eliaser Johnson, Judith P. McCool, and Alistair J. Woodward

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Tregitope: Immunomodulation Powerhouse, Leslie Cousens, Nader Najafian, William D. Martin, and Anne S. De Groot

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Cross-conservation of T-cell epitopes: Now even more relevant to (H7N9) influenza vaccine design, Anne S. De Groot, Lenny Moise, Rui Liu, Andres H. Gutierrez, Frances Terry, Ousmane A. Koita, Ted M. Ross, and William Martin

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Immune Camouflage: Relevance to Vaccine Design and Human Immunology, Anne S. De Groot, Leonard Moise, Rui Liu, Andres H. Gutierrez, Ryan Tassone, Chris Bailey-Kellogg, and William Martin

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Meeting Report: Ocean ‘Omics Science, Technology and Cyberinfrastructure: Current Challenges and Future Requirements (August 20-23, 2013), Jack A. Gilbert, Gregory J. Dick, Bethany D. Jenkins, John Heidelberg, Eric Allen, Katherine R.M. Mackey, and Edward F. DeLong

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Flexible and Scalable Genotyping-by-Sequencing Strategies for Population Studies, Christopher Heffelfinger, Christopher A. Fragoso, Maria A. Moreno, John D. Overton, John P. Mottinger, Hongyu Zhao, Joe Tohme, and Stephen L. Dellaporta

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Integrated Assessment of Predicted MHC binding and Cross-conservation with Self Reveals Patterns of Viral Camouflage, Lu He, Anne S. DeGroot, Andres H. Gutierrez, William D. Martin, Lenny Moise, and Chris Bailey-Kellogg

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Identification of the Maize Gravitropism Gene lazy plant1 by a Transposon-Tagging Genome Resequencing Strategy, Thomas P. Howard III, Andrew P. Hayward, Anthony Tordillos, Christopher Fragoso, Maria A. Moreno, Joe Tohme, Albert P. Kausch, John P. Mottinger, and Stephen L. Dellaporta

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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans Through Transcriptome Sequencing, Patrick J. Keeling, Bethany D. Jenkins, Susanne Menden-Deuer, and et al

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VaxCelerate II: Rapid development of a self-assembling vaccine for Lassa fever, Pierre Leblanc, Leonard Moise, Cybelle Luza, Kanawat Chantaralawan, Lynchy Lezeau, Jianping Yuan, Mary Field, Daniel Richer, Christine Boyle, William D. Martin, Jordan B. Fishman, Eric A. Berg, David Baker, Brandon Zeigler, Dale E. Mais, William Taylor, Russell Coleman, H. Shaw Warren, Jeffrey A. Gelfand, Anne S. De Groot, Timothy Brauns, and Mark C. Poznansky

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HCV Epitope, Homologous to Multiple Human Protein Sequences, Induces a Regulatory T Cell Response in Infected Patients, Phyllis T. Losikoff, Sasmita Mishra, Francis Terry, Andres Gutierrez, Matt T. Ardito, Loren Fast, Martha Nevola, William D. Martin, Chris Bailey-Kellogg, Anne S. De Groot, and Stephen H. Gregory

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Escherichia coli Pathotypes Occupy Distinct Niches in the Mouse Intestine, Jessica P. Meador, Matthew E. Caldwell, Paul S. Cohen, and Tyrrell Conway

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Dendritic Cell-Mediated, DNA-Based Vaccination Against Hepatitis C Induces the Multi-Epitope-Specific Response of Humanized, HLA Transgenic Mice, Sasmita Mishra, Bianca J. Lavelle, Joe Desrosiers, Matt T. Ardito, Frances Terry, William D. Martin, Anne S. De Groot, and Stephen H. Gregory

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Peptide-Pulsed Dendritic Cells Induce the Hepatitis C Viral Epitope-Specific Responses of Naïve Human T Cells, Sasmita Mishra, Phyllis T. Losikoff, Alyssa A. Self, Frances Terry, Matthew T. Ardito, Ryan Tassone, William D. Martin, Anne S. De Groot, and Stephen H. Gregory

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Smarter Vaccine Design Will Circumvent Regulatory T Cell-Mediated Evasion in Chronic HIV and HCV Infection, Leonard Moise, Frances Terry, Andres H. Gutierrez, Ryan Tassone, Phyllis Losikoff, Stephen H. Gregory, Chris Bailey-Kellogg, William D. Martin, and Anne S. De Groot

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A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes, Regina Salvat, Leonard Moise, Chris Bailey-Kellogg, and Karl E. Griswold

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Cyclic Peptide-Capped Gold Nanoparticles for Enhanced siRNA Delivery, Amir Nasrolahi Shirazi, Karissa L. Paquin, Niall G. Howlett, Dindyal Mandal, and Keykavous Parang

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Homeoviscous response of Clostridium pasteurianum to butanol toxicity during glycerol fermentation, Keerthi P. Venkataramanan, Yogi Kurniawan, Judy J. Boatman, Cassandra H. Haynes, Katherine A. Taconi, Lenore M. Martin, Geoffrey D. Bothun, and Carmen Scholz

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Human Immune Responses to H. pylori HLA Class II Epitopes Identified by Immunoinformatic Methods, Songhua Zhang, Joseph Desrosiers, Jose R. Aponte-Pieras, Kristen DaSilva, Loren D. Fast, Frances Terry, William D. Martin, Anne S. De Groot, Leonard Moise, and Steven F. Moss

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Pan-Genome Analyses Identify Lineage- and Niche-Specific Markers of Evolution and Adaptation in Epsilonproteobacteria, Ying Zhang and Stefan M. Sievert

Submissions from 2013

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An Escherichia coli Nissle 1917 Missense Mutant Colonizes the Streptomycin-Treated Mouse Intestine Better than the Wild Type but Is Not a Better Probiotic, Jimmy Adediran, Mary P. Leatham-Jensen, Matthew E. Mokszycki, Jakob Frimodt-Møller, Karen A. Krogfelt, Krystyna Kazmierczak, Linda J. Kenney, Tyrrell Conway, and Paul S. Cohen

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Microbial Community Structure of a Leachfield Soil: Response to Intermittent Aeration and Tetracycline Addition, Janet A. Atoyan, Andrew M. Staroscik, David R. Nelson, Erika L. Patenaude, David A. Potts, and José A. Amador

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Coordinate Nuclear Targeting of the FANCD2 and FANCI Proteins via a FANCD2 Nuclear Localization Signal, Rebecca A. Boisvert, Meghan A. Rego, Paul A. Azzinaro, Maurizio Mauro, and Niall G. Howlett

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Thalassiosira spp. Community Composition Shifts in Response to Chemical and Physical Forcing in the Northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Traci L. Haddock, Susanne Menden-Deuer, Eric G. Roy, Mark L. Wells, and Bethany D. Jenkins

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Towards Independent Particle Reconstruction from Cryogenic Transmission Electron Microscopy, W. Lewis Collier, Jean Yves Hervé, and Lenore Martin

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Application of IgG-Derived Natural Treg Epitopes (IgG Tregitopes) to Antigen-Specific Tolerance Induction in a Murine Model of Type 1 Diabetes, Leslie P. Cousens, Yan Su, Elizabeth McClaine, Xin Li, Frances Terry, Robert Smith, Jinhee Lee, William Martin, David W. Scott, and Anne S. De Groot

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Do Tregitopes have the potential to impact the current treatment landscape of autoimmune diseases?, Anne S. De Groot

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Low immunogenicity predicted for emerging avian-origin H7N9, Anne S. De Groot, Matthew Ardito, Frances Terry, Lauren Levitz, Ted Ross, Leonard Moise, and William Martin

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Tregitope Peptides: The Active Pharmaceutical Ingredient of IVIG?, Anne S. De Groot, Leslie Cousens, Federico Mingozzi, and William Martin

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Making Vaccines "On Demand", Anne S. De Groot, Leo Einck, Leonard Moise, Michael Chambers, John Ballantyne, Robert W. Malone, Matthew Ardito, and William Martin

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Beyond humanization and de-immunization: tolerization as a method for reducing the immunogenicity of biologics, Anne S. De Groot, Frances Terry, Leslie Cousens, and William Martin

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Computational Vaccinology and the ICoVax 2012 Workshop, Yongqun He, Zhiwei Cao, Anne S. De Groot, Vladimir Brusic, Christian Schönbach, and Nikolai Petrovsky

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Modulation of CD8+ T cell responses to AAV vectors with IgG-derived MHC class II epitopes, Daniel J. Hui, Etiena Banser-Tschakarjan, Yifeng Chen, Robert J. Davidson, George Buchlis, Mustafa Yazicioglu, Gary C. Pien, Jonathan D. Finn, Virginia Haurigot, Alex Tai, David W. Scott, Leslie P. Cousens, Shangzhen Zhou, Anne S. De Groot, and Federico Mingozzi

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Epitope Recognition in HLA-DR3 Transgenic Mice Immunized to TSH-R Protein or Peptides, Hidefumi Inaba, Leonard Moise, William Martin, Anne S. De Groot, Joe Desrosiers, Ryan Tassone, George Buchman, Takashi Akamizu, and Leslie J. De Groot

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T-cell dependent immunogenicity of protein therapeutics: Preclinical assessment and mitigation, Vibha Jawa, Leslie P. Cousens, Michel Awwad, Eric Wakshull, Harald Kropshofer, and Anne S. De Groot

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Probiotic Strains for Shellfish Aquaculture: Protection of Eastern Oyster, Crassostrea virginica, Larvae and Juveniles Againsl Bacterial Challenge, Murni Karim, Wenjing Zhao, David C. Rowley, David R. Nelson, and Marta Gomez-Chiarri

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Characterization of Plp, a Phosphatidylcholine-Specific Phospholipase and Hemolysin of Vibrio anguillarum, Ling Li, Xiangyu Mou, and David R. Nelson

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Nutritional Basis for Colonization Resistance by Human Commensal Escherichia coli Strains HS and Nissle 1917 Against E. coli O157:H7 in the Mouse Intestine, Rosalie Maltby, Mary P. Leatham-Jensen, Terri Gibson, Paul S. Cohen, and Tyrrell Conway

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The two-faced T cell epitope: Examining the host-microbe interface with JanusMatrix, Leonard Moise, Andres H. Gutierrez, Chris Bailey-Kellogg, Frances Terry, Qibin Leng, Karim M. Abdel Hady, Nathan C. VerBerkmoes, Marcelo B. Sztein, Phyllis T. Losikoff, William D. Martin, Alan L. Rotham, and Anne S. De Groot

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Building Better Biotherapeutics and Vaccines by Design: EpiVax, Inc., an Immunology Company, Leonard Moise, Anthony Marcello, Ryan Tassone, Leslie Cousens, William Martin, and Anne S. De Groot

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Immunization with Cross-Conserved H1N1 Influenza CD4+ T-Cell Epitopes Lowers Viral Burden in HLA DR3 Transgenic Mice, Leonard Moise, Ryan Tassone, Howard Latimer, Frances Terry, Lauren Levitz, John P. Haran, Ted M. Ross, Christine Boyle, William D. Martin, and Anne S. De Groot

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Universal H1N1 influenza vaccine development, Leonard Moise, Frances Terry, Matthew Ardito, Ryan Tassone, Howard Latimer, Christine Boyle, William D. Martin, and Anne S. De Groot

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H-NS Is a Negative Regulator of the Two Hemolysin/Cytotoxin Gene Clusters in Vibrio anguillarum, Xiangyu Mou, Edward J. Spinard, Maureen V. Driscoll, Weinjing Zhao, and David R. Nelson

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A Cross-Sectional Study to Assess HPV Knowledge and HPV Vaccine Acceptability in Mali, Danielle N. Poole, J. Kathleen Tracy, Lauren Levitz, Mali Rochas, Kotou Sangare, Shahla Yekta, Karamoko Tounkara, Ben Aboubacar, Ousmane Koita, Mark Lurie, and Anne S. De Groot

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Cyclic peptides containing tryptophan and arginine as Src kinase inhibitors, Amir Nasrolahi Shirazi, Rakesh Kumar Tiwari, Alex Brown, Dindyal Mandal, Gongqin Sun, and Keykavous Parang

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Report from the field - Overview of the Sixth Annual Vaccine Renaissance Conference, Denice Spero, Lauren Levitz, and Anne S. De Groot

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Regulatory T cell epitopes (Tregitopes) in IgG induce tolerance in vivo and lack immunogenicity per se, Yan Su, Robert Rossi, Anne S. De Groot, and David W. Scott

Submissions from 2012

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Further Confirmation of Broadly Conserved, Highly Immunogenic Cross-Clade HIV CTL Epitopes for Inclusion in the GAIA HIV Vaccine, Anne S. De Groot, Leonard Moise, O. Koita, K. Sangare, L. Levitz, J. Rozenhal, Z. Koty, K. Tounkara, M. Ardito, C. M. Boyle, M. Rochas, and W. Martin

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A Decade of Partnering to Stop HIV in West Africa: GAIA VF Prevention, Education, Access to Care and Vaccine Trial Site Development in Bamako, Mali, Anne S. De Groot, K. Tounkara, B. Aboubacar, F. Siby Diallo, F. Bougoudogo, O. Koita, O. Koita, S. Dao, S. Diallo, Y. Traoré, L. Diarra, L. Diarra, G. Diarra, Y. Koné, R. Mali, and L. Steven

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Management of Thyroid Dysfunction during Pregnancy and Postpartum: An Endocrine Society Clinical Practice Guideline, Leslie De Groot, Marcos Abalovich, Erik K. Alexander, Nobuyuki Amino, Linda Barbour, Rhoda H. Cobin, Creswell J. Eastman, John H. Lazarus, Dominique Luton, Susan J. Mandel, Jorge Mestman, Joanne Rovet, and Scott Sullivan

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The Transcriptome and Proteome of the Diatom Thalassiosira Pseudonana Reveal a Diverse Phosphorus Stress Response, Sonya T. Dyhrman, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa Mercier, Harriet Alexander, LeAnn P. Whitney, Andrea Drzewianowski, Vladimir V. Bulygin, Erin M. Bertrand, Zhijin Wu, Claudia Benitez-Nelson, and Abigail Heithoff

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Pollen Sterility—A Promising Approach to Gene Confinement and Breeding for Genetically Modified Bioenergy Crops, Joel P. Hague, Stephen L. Dellaporta, Maria A. Moreno, Chip Longo, Kimberly Nelson, and Albert P. Kausch

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Evaluating Short-Term Patient Outcomes after HIV Care Interventions in a Low Resource Setting: Preparing for an HIV Vaccine Trial Site in Bamako, Mali, Z. Koty, A. Bicki, Y. Koné, L. Diarra, K. Tounkara, F. Siby Diallo, L. Levitz, B. Aboubacar, M. Rochas, S. Dao, and Anne S. De Groot

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The Streptomycin-Treated Mouse Intestine Selects Escherichia coli envZ Missense Mutants That Interact with Dense and Diverse Intestinal Microbiota, Mary P. Leatham-Jensen, Jakob Frimodt-Møller, Jimmy Adediran, Matthew E. Mokszycki, Megan E. Banner, Joyce E. Caughron, Karen A. Krogfelt, Tyrrell Conway, and Paul S. Cohen

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p21 promotes error-free replication-coupled DNA double-strand break repair, Maurizio Mauro, Meghan A. Rego, Rebecca A. Boisvert, Fumiko Esashi, Francesca Cavallo, Maria Jasin, and Niall G. Howlett

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Moving H. pylori Vaccine Development Forward with Bioinformatics and Immunomics, Leonard Moise, Steven F. Moss, and Anne S. De Groot

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Knowledge/Attitude/Practices of HPV & Cervical Cancer, Willingness to Participate in Vaccine Trial in Preparation for HIV & HPV Vaccine Trials in Mali, D. Poole, K. Tracy, L. Levitz, S. Yekta, E. Kossow, T. Huang, M. Rochas, K. Sangare, K. Tounkara, B. Aboubacar, O. Koita, F. Siby Diallo, S. Sow, I. Téguété, A. Dolo, F. Bougoudogo, M. Lurie, and Anne S. De Groot

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Adeno-associated virus mediated delivery of Tregitope 167 ameliorates experimental colitis, Sander van der Marel, Anna Majowicz, Karin Kwikkers, Richard van Logtenstein, Anje A. te Velde, Anne S. De Groot, Sybren L. Meijer, Sander J. van Deventer, Harald Petry, Daniel W. Hommes, and Valerie Ferreira

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A Dominant EV71-Specific CD4+ T Cell Epitope is Highly Conserved Among Human Enteroviruses, Ruicheng Wei, Chunfu Yang, Mei Zeng, Frances Terry, Kai Zhu, Chunhui Yang, Ralf Altmeyer, William Martin, Anne S. De Groot, and Qibin Leng

Submissions from 2011

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An Integrated Genomic and Immunoinformatic Approach to H. pylori Vaccine Design, Matthew Ardito, Joanna Fueyo, Ryan Tassone, Frances Terry, Kristin DaSilva, Songhua Zhang, William Martin, Anne S. De Groot, Steven F. Moss, and Leonard Moise

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Immunogenic Consensus Sequence T Helper Epitopes for a Pan-Burkholderia Biodefense Vaccine, Anne S. De Groot, Matthew Ardito, Leonard Moise, Eric A. Gustafson, Denice Spero, Gloria Tejada, and William Martin

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Genotype and Phenotypes of an Intestine-Adapted Escherichia coli K-12 Mutant Selected by Animal Passage for Superior Colonization, Andrew J. Fabich, Mary P. Leatham, Joe E. Grissom, Graham Wiley, Hongshing Lai, Fares Najar, Bruce A. Roe, Paul S. Cohen, and Tyrrell Conway

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Characterization of Putative Iron Responsive Genes as Species-specific Indicators of Iron Stress in Thalassiosiroid Diatoms, Bethany D. Jenkins, LeAnn P. Whitney, Jeremy J. Lins, Margaret P. Hughes, Mark L. Wells, and P. Dreux Chappell