Document Type
Article
Date of Original Version
2004
Department
Plant Sciences
Abstract
We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10 000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search. Our web server and tutorial can be found at http://acmes.rnet.missouri.edu
Citation/Publisher Attribution
Jeff Reneker, Chi-Ren Shyu, Peiyu Zeng, Joseph C. Polacco, Walter Gassmann; ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval, Nucleic Acids Research, Volume 32, Issue suppl_2, 1 July 2004, Pages W649–W653. doi: 10.1093/nar/gkh455
Available at: https://doi.org/10.1093/nar/gkh455
