Publications from the Department of Physics faculty at the University of Rhode Island.

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Submissions from 2022

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Alkaline nucleoplasm facilitates contractile gene expression in the mammalian heart, Alzbeta Hulikova, Kyung Chan Park, Aminah A. Loonat, Mala Gunadasa-Rohling, M. Kate Curtis, Yu Jin Chung, Abigail Wilson, Carolyn A. Carr, Andrew W. Trafford, Marjorie Fournier, Anna Moshnikova, Oleg A. Andreev, Yana K. Reshetnyak, Paul R. Riley, Nicola Smart, Thomas A. Milne, Nicholas T. Crump, and Pawel Swietach

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Self-gravitating clusters of Bose-Einstein gas with planar, cylindrical, or spherical symmetry: Gaseous density profiles and onset of condensation, Michael Kirejczyk, Gerhard Müller, and Pierre-Henri Chavanis

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Self-gravitating clusters of Fermi-Dirac gas with planar, cylindrical, or spherical symmetry: evolution of density profiles with temperature, Michael Kirejczyk, Gerhard Müller, and Pierre-Henri Chavanis

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Jammed disks of two sizes and weights in a channel: Alternating sequences, Dan Liu and Gerhard Müller

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Mechanical response to tension and torque of molecular chains via statistically interacting particles associated with extension, contraction, twist, and supercoiling, Aaron C. Meyer, Michael Karbach, Ping Lu, and Gerhard Müller

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Phonon decay in BaSnO3 perovskite, Chandra P. Neupane, Jeremy Sylvester, Xianghan Xu, Sang-Wook Cheong, and Feruz Ganikhanov

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Free-energy landscapes and insertion pathways for peptides in membrane environment, Ganga P. Sharma, Aaron C. Meyer, Suhail Habeeb, Michael Karbach, and Gerhard Müller

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pHLIP Peptides Target Acidity in Activated Macrophages, Hannah Visca, Michael DuPont, Anna Moshnikova, Troy Crawford, Donald M. Engelman, Oleg A. Andreev, and Yana K. Reshetnyak

Submissions from 2021

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Interacting hard-sphere fluids in an external field, Benaoumeur Bakhti and Gerhard Müller

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Divergences in gravitational-wave emission and absorption from extreme mass ratio binaries, Enrico Barausse, Emanuele Berti, Vitor Cardoso, Scott A. Hughes, and Gaurav Khanna

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Polyamines Drive Myeloid Cell Survival by Buffering Intracellular pH to Promote Immunosuppression in Glioblastoma, Jason Miska, Aida Rashidi, Catalina Lee-Chang, Peng Gao, Aurora Lopez-Rosas, Peng Zhang, Rachel Burga, Brandyn Castro, Ting Xiao, Yu Han, David Hou, Samay Sampat, Alex Cordero, Joshua S. Stoolman, Craig M. Horbinski, Mark Burns, Yana Reshetnyak, Navdeep S. Chandel, and Maciej S. Lesniak

Submissions from 2020

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Optical States in a 1-D Superlattice with Multiple Photonic Crystal Interfaces, Nicholas J. Bianchi and Leonard M. Kahn

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Ex-vivo Imaging of Upper Tract Urothelial Carcinoma Using Novel pH Low Insertion Peptide (Variant 3), a Molecular Imaging Probe, Joseph Brito, Borivoj Golijanin, Ohad Kott, Anna Moshnikova, Catrina Mueller-Leonhard, Boris Gershman, Oleg A. Andreev, Yana K. Reshetnyak, Ali Amin, and Dragan Golijanin

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A guide to LIGO–Virgo detector noise and extraction of transient gravitational-wave signals, Robert Coyne and Et Al

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Model comparison from LIGO–Virgo data on GW170817's binary components and consequences for the merger remnant, Robert Coyne and Et Al

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pHLIP ICG for Delineation of Tumors and Blood Flow during Fluorescence-Guided Surgery, Troy M. Crawford, Anna Moshnikova, Sean Roles, Anuradha Weerakkody, Michael A. DuPont, Lukas M. Carter, John Shen, Donald M. Engelman, Jason S. Lewis, Oleg A. Andreev, and Yana Reshetnyak

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Demarcation of sepsis-induced peripheral and central acidosis with ph (low) insertion cycle peptide, Kelly E. Henry, Aisling M. Chaney, Veronica L. Nagle, Haley C. Cropper, Saghar Mozaffari, Gregory Slaybaugh, Keykavous Parang, Oleg A. Andreev, Yana K. Reshetnyak, Michelle L. James, and Jason S. Lewis

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Jammed Disks of Two Sizes in a Narrow Channel, Dan Liu and Gerhard Müller

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Molecular chains under tension: Thermal and mechanical activation of statistically interacting extension and contraction particles, Aaron C. Meyer, Yahya Öz, Norman Gundlach, Michael Karbach, Ping Lu, and Gerhard Müller

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Targeting Acidic Diseased Tissues by pH-Triggered Membrane-Associated Peptide Folding, Yana Reshetnyak, Anna Moshnikova, Oleg A. Andreev, and Donald M. Engelman

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Effects of Nanoparticle Size and Radiation Energy on Copper-Cysteamine Nanoparticles for X-ray Induced Photodynamic Therapy, Bindeshwar Sah, Jing Wu, Adam Vanasse, Nil Kanatha Pandey, Lalit Chudal, Zhenzhen Huang, Wenzhi Song, Hongmei Yu, Lun Ma, Wei Chen, and Michael Antosh

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Two Candidate High-redshift X-Ray Jets without Coincident Radio Jets, D. A. Schwartz, A. Siemiginowska, B. Snios, D. M. Worrall, M. Birkinshaw, C. C. Cheung, H. Marshall, G. Migliori, J. F. C. Wardle, and Doug Gobeille

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Kinetics of pHLIP peptide insertion into and exit from a membrane, Gregory Slaybaugh, Dhammika Weerakkody, Donald M. Engleman, Oleg A. Andreev, and Yana Reshetnyak

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T-cells produce acidic niches in lymph nodes to suppress their own effector functions, Hao Wu, Veronica Estrella, Matthew Beatty, Dominique Abrahams, Asmaa El-Kenawi, Shonagh Russell, Arig Ibrahim-Hashim, Dario Livio Longo, Yana Reshetnyak, Anna Moshnikova, Oleg A. Andreev, Kimberly Luddy, Mehdi Damaghi, Krithika Kodumudi, Smitha R. Pillai, Pedro Enriquez-Navas, Shari Pilon-Thomas, Pawel Swietach, and Robert J. Gillies

Submissions from 2019

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Seeded fiber laser with nonlinear mirror feedback, Adam Card and Feruz Ganikhanov

Seeded fiber laser with nonlinear mirror feedback, Adam Card and Feruz Ganikhanov

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Search for Eccentric Binary Black Hole Mergers with Advanced LIGO and Advanced Virgo during Their First and Second Observing Runs, Robert Coyne and Et Al

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Search for gravitational waves from Scorpius X-1 in the second Advanced LIGO observing run with an improved hidden Markov model, Robert Coyne and Et Al

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High spectral resolution second harmonic generation microspectroscopy at thin layer interfaces with broadband continuum pulses, M. Mokim, A. Card, and Feruz Ganikhanov

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Genetic deficiency or pharmacological inhibition of miR-33 protects from kidney fibrosis, Nathan L. Price, Veronica Miguel, Wen Ding, Abhishek K. Singh, Shipra Malik, Noemi Rotllan, Anna Moshnikova, Jakub Toczek, Caroline Zeiss, Mehran M. Sadeghi, Noemi Arias, Angel Baldan, Oleg A. Andreev, Diego Rodriguez-Puyol, Raman Bahal, Yana K. Reshetnyak, Yajaira Suarez, Carlos Fernandez-Hernando, and Santiago Lamas

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Acid specific dark quencher QC1 pHLIP for multi-spectral optoacoustic diagnoses of breast cancer, Sheryl Roberts, Arianna Strome, Crystal Choi, Chrysafis Andreou, Susanne Kossatz, Christian Brand, Travis Williams, Michelle Bradbury, Moritz F. Kircher, Yana K. Reshetnyak, Jan Grimm, Jason S. Lewis, and Thomas Reiner

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Suppressing miR-21 activity in tumor-associated macrophages promotes an antitumor immune response, Mahnaz Sahraei, Balkrishna Chaube, Yuting Liu, Jonathan Sun, Alanna Kaplan, Nathan L. Price, Wen Ding, Stanley Oyaghire, Rolando Garcia-Milian, Sameet Mehta, Yana Reshetnyak, Raman Bahal, Paolo Fiorina, Peter M. Glazer, David L. Rimm, Carlos Fernandez-Hernando, and Yajaira Suarez

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Mapping pH at Cancer Cell Surfaces, Da Wei, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

Submissions from 2018

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Density profiles of a self-gravitating lattice gas in one, two, and three dimensions, Benaoumeur Bakhti, Divana Boukari, Michael Karbach, Philipp Maass, and Gerhard Müller

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Quantitative Ultrafast Spectroscopy and Microscopy of Traditional and Soft Condensed Matter, Adam Card, Mohammad Mokim, and Feruz Ganikhanov

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Search for Subsolar-Mass Ultracompact Binaries in Advanced LIGO’s First Observing Run, Robert Coyne and Et Al

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Bilayer thickness and curvature influence binding and insertion of a pHLIP® peptide, Alexander G. Karabadzhak, Dhammika Weerkkody, John Deacon, Oleg A. Andreev, Yana K. Reshetnyak, and Donald Engelman

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Nonlinear optical susceptibility of atomically thin WX2 crystals, Mohammad Mokim, Adam Card, and Feruz Ganikhanov

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Decoration of Nanovesicles with pH (Low) Insertion Peptide (pHLIP) for Targeted Delivery, Federica Rinaldi, Patrizia N. Hanieh, Elena Del Favero, Valeria Rondelli, Paola Brocca, Mohan C. Pereira, Oleg A. Andreev, Yana K. Reshetnyak, Carlotta Marianecci, and Maria Carafa

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Membrane-Induced p Ka Shifts in wt-pHLIP and Its L16H Variant, Diogo Vila-Viçosa, Tomás F.D. Silva, Gregory Slaybaugh, Yana K. Reshetnyak, Oleg A. Andreev, and Miguel Machuqueiro

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Erratum: Applications of pHLIP Technology for Cancer Imaging and Therapy (Trends in Biotechnology (2017) 35(7) (653–664), (S016777991730063X) (10.1016/j.tibtech.2017.03.014)), Linden C. Wyatt, Jason S. Lewis, Oleg A. Andreev, Yana K. Reshetnyak, and Donald M. Engelman

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Peptides of pHLIP family for targeted intracellular and extracellular delivery of cargo molecules to tumors, Linden C. Wyatt, Anna Moshnikova, Troy Crawford, Donald M. Engelman, Oleg A. Andreev, and Yana K. Reshetnyak

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X-Ray-Induced Changes to Passivation Layers of Lithium-Ion Battery Electrodes, Benjamin T. Young, David R. Heskett, Joseph C. Woicik, and Brett L. Lucht

Submissions from 2017

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Synthesis and characterization of pHLIP® coated gold nanoparticles, Jennifer L. Daniels, Troy M. Crawford, Oleg A. Andreev, and Yana K. Reshetnyak

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Dispersion of the resonant second order nonlinearity in 2D semiconductors probed by femtosecond continuum pulses, Mohammad Mokim, Adam Card, Bindeshwar Sah, and Feruz Ganikhanov

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Tracing molecular dephasing in biological tissue, Mohammad Mokim, Chris Carruba, and Feruz Ganikhanov

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Gene Expression as a Dosimeter in Irradiated Drosophila melanogaster, Samana Shrestha, Adam Vanasse, Leon N. Cooper, and Michael Antosh

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Spin flip loss in magnetic confinement of ultracold neutrons for neutron lifetime experiments, A. Steyerl, K. K. H. Leung, Charles Kaufman, Gerhard Müller, and S. S. Malik

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Applications of pHLIP Technology for Cancer Imaging and Therapy, Linden C. Wyatt, Jason S. Lewis, Oleg A. Andreev, Yana K. Reshetnyak, and Donald M. Engelman

Submissions from 2016

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Comparative Study of Tumor Targeting and Biodistribution of pH (Low) Insertion Peptides (pHLIP® Peptides) Conjugated with Different Fluorescent Dyes, Ramona Cosmina Adochite, Anna Moshnikova, Jovana Golijanin, Oleg A. Andreev, Natallia Katenka, and Yana Reshetnyak

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Probe for the measurement of cell surface pH in vivo and ex vivo, Michael Anderson, Anna Moshnikova, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

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Corrigendum to "Advanced targeted nanomedicine" [J. Biotechnol. 202 (2015) 88-97], Mohan C.M. Arachchige, Yana K. Reshetnyak, and Oleg A. Andreev

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PET Imaging of Extracellular pH in Tumors with 64Cu- and 18F-Labeled pHLIP Peptides: A Structure–Activity Optimization Study, Dustin Wayne Demoin, Linden C. Wyatt, Kimberly J. Edwards, Dalya Abdel-Atti, Mirkka Sarparanta, Jacob Pourat, Valerie A. Longo, Sean D. Carlin, Donald M. Engelman, Oleg A. Andreev, Yana K. Reshetnyak, Nerissa Viola-Villegas, and Jason S. Lewis

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Resolving Fine Spectral Features in Lattice Vibrational Modes Using Femtosecond Coherent Spectroscopy, Feruz Ganikhanov, Adam Card, and Mohammad Mokim

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Targeted Imaging of Urothelium Carcinoma in Human Bladders by an ICG pHLIP Peptide Ex vivo, Jovana Golijanin, Ali Amin, Anna Moshnikova, Joseph M. Brito, Timothy Y. Tran, Ramona Cosmina Adochite, Gregory O. Andreev, Troy Crawford, Donald Engelman, Oleg A. Andreev, Yana Reshetnyak, and Dragan Golijanin

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pHLIP Peptide Interaction with a Membrane Monitored by SAXS, Theyencheri Narayanan, Dhammika Weerakkody, Alexander G Karabadzhak, Michael Anderson, Oleg A. Andreev, and Yana Reshetnyak

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pH-sensitive pHLIP® Coated Niosomes, Mohan C. Pereira, Monica Pianella, Da Wei, Anna Moshnikova, Carlotta Marianecci, Maria Carafa, Oleg A. Andreev, and Yana Reshetnyak

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Insertion into lipid bilayer of truncated pHLIP® peptide, Dhammika Weerakkody, Oleg A. Andreev, and Yana K. Reshetnyak

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Novel pH-Sensitive Cyclic Peptides, Dhammika Weerakkody, Anna Moshnikova, Naglaa Salem El-Sayed, Ramona-Cosmina Adochite, Gregory Slaybaugh, Jovana Golijanin, Rakesh K. Tiwari, Oleg A. Andreev, Keykavous Parang, and Yana Reshetnyak

Submissions from 2015

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PH (Low) Insertion Peptide targets 4T1 mammary tumors, Ramona Cosmina Adochite, Anna Moshnikova, Oleg A. Andreev, and Yana K. Reshetnyak

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Enhancement of Radiation Effect on Cancer Cells by Gold-pHLIP, Michael P. Antosh, Dayanjali D. Wijesinghe, Samana Shrestha, Robert Lanou, Yun Hu Huang, Thomas Hasselbacher, David Fox, Nicola Neretti, Shouheng Sun, Natallia Katenka, Leon N. Cooper, Oleg A. Andreev, and Yana K. Reshetnyak

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Advanced targeted nanomedicine, Mohan C.M. Arachchige, Yana K. Reshetnyak, and Oleg A. Andreev

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Monodisperse hard rods in external potentials, Benaoumeur Bakhti, Michael Karbach, Philipp Maass, and Gerhard Müller

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Geometric phases in electric dipole searches with trapped spin-1/2 particles in general fields and measurement cells of arbitrary shape with smooth or rough walls, R. Golub, Charles Kaufman, Gerhard Müller, and A. Steyerl

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Effect of Vinylene Carbonate and Fluoroethylene Carbonate on SEI Formation on Graphitic Anodes in Li-Ion Batteries, Mengyun Nie, Julien Demeaux, Benjamin T. Young, David R. Heskett, Yanjing Chen, Arijit Bose, Joseph C. Woicik, and Brett L. Lucht

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Imaging Tumor Acidity: pH-Low Insertion Peptide Probe for Optoacoustic Tomography, Yana Reshetnyak

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Characterizing Solid Electrolyte Interphase on Sn Anode in Lithium Ion Battery, Daniel M. Seo, Cao Cuong Nguyen, Benjamin T. Young, David R. Heskett, Joseph C. Woicik, and Brett L. Lucht

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Coil-Helix Transition of Polypeptide at Water-Lipid Interface, Ganga P. Sharma, Yana Reshetnyak, Oleg A. Andreev, Michael Karbach, and Gerhard Müller

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The pH Low Insertion Peptide pHLIP Variant 3 as a Novel Marker of Acidic Malignant Lesions, Thomas T. Tapmeier, Anna Moshnikova, John Beech, Danny Allen, Paul Kinchesh, Sean Smart, Adrian Harris, Alan McIntyre, Donald M. Engelman, Oleg A. Andreev, Yana K. Reshetnyak, and Ruth J. Muschel

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Enabling the detection of UV signal in multimodal nonlinear microscopy with catalogue lens components, Martin Vogel, Axel Wingert, Rainer H.A. Fink, Christian Hagl, Feruz Ganikhanov, and Christian P. Pfeffer

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Synthesis of Co-Electrospun Lead Selenide Nanostructures within Anatase Titania Nanotubes for Advanced Photovoltaics, Evan K. Wujcik, Stephanie R. Aceto, David R. Heskett, and Arijit Bose

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Ion Bombardment of Ni(110) Studied with Inverse Photoemission Spectroscopy and Low-Energy Electron Diffraction, Benjamin Young, James Warner, and David R. Heskett

Submissions from 2014

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Targeting breast tumors with pH (Low) insertion peptides, Ramona Cosmina Adochite, Anna Moshnikova, Sean D. Carlin, Renato A. Guerrieri, Oleg A. Andreev, Jason S. Lewis, and Yana K. Reshetnyak

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Targeting Diseased Tissues by pHLIP Insertion at Low Cell Surface pH, Oleg A. Andreev, Donald M. Engelman, and Yana K. Reshetnyak

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Statistically interacting vacancy particles, Benaoumeur Bakhti, Michael Karbach, Philipp Maass, Mohammad Mokim, and Gerhard Müller

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Targeting Pancreatic Ductal Adenocarcinoma Acidic Microenvironment, Zobeida Cruz-Monserrate, Christina L. Roland, Defeng Deng, Thiruvengadam Arumugam, Anna Moshnikova, Oleg A. Andreev, Yana K. Reshetnyak, and Craig D. Logsdon

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Rough Mirror as a Quantum State Selector: Analysis and Design, Mauricio Escobar, F. Lamy, A. E. Meyerovich, and V. V. Nesvizhevsky

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Applications and Identification of Surface Correlations, Mauricio Escobar and A. E. Meyerovich

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Quantized Ultracold Neutrons in Rough Waveguides: GRANIT Experiments and Beyond, Mauricio Escobar and A. E. Meyerovich

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PHLIP-FIRE, a cell insertion-triggered fluorescent probe for imaging tumors demonstrates targeted cargo delivery in vivo, Alexander G. Karabadzhak, Ming An, Lan Yao, Rachel Langenbacher, Anna Moshnikova, Ramona Cosmina Adochite, Oleg A. Andreev, Yana K. Reshetnyak, and Donald M. Engelman

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Disks in a Narrow Channel Jammed by Gravity and Centrifuge: Profiles of Pressure, Mass Density and Entropy Density, Christopher Moore, Dan Liu, Benjamin Ballnus, Michael Karbach, and Gerhard Müller

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Spin Flip Loss in Magnetic Storage of Ultracold Neutrons, A. Steyerl, Charles Kaufman, S. S. Malik, A. M. Desai, and Gerhard Müller

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Calculation of geometric phases in electric dipole searches with trapped spin-1/2 particles based on direct solution of the Schrödinger equation, Albert Steyerl, Charles Kaufman, Gerhard Müller, Surendra S. Malik, A. M. Desai, and R. Golub

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Understanding the pharmacological properties of a metabolic PET tracer in prostate cancer, Nerissa Therese Viola-Villegas, Sean D. Carlin, Ellen Ackerstaff, Kuntal K. Sevak, Vadim Divilov, Inna Serganova, Natalia Kruchevsky, Michael Anderson, Ronald G. Blasberg, Oleg A. Andreev, Donald M. Engelman, Jason A. Koutcher, Yana K. Reshetnyak, and Jason S. Lewis

Submissions from 2013

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The Role of Electric Field and Ultrasonication in the Deposition and Alignment of Single-Walled Carbon Nanotube Networks Using Dielectrophoresis, S. Ammu and David R. Heskett

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Interacting hard rods on a lattice: Distribution of microstates and density functionals, Benaoumeur Bakhti, Gerhard Müller, and Philipp Maass

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Jammed Disks in Narrow Channel: Criticality and Ordering Tendencies, Norman Gundlach, Michael Karbach, Dan Liu, and Gerhard Müller

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Antiproliferative Effect of pHLIP-Amanitin, Anna Moshnikova, Valentina Moshnikova, Oleg A. Andreev, and Yana Reshetnyak

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pH (Low) Insertion Peptide (pHLIP) Targets Ischemic Myocardium, Eugene A. Sosunov, Evgeny P. Anyukhovsky, Alexander A. Sosunov, Anna Moshnikova, Dayanjali Wijesinghe, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

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Family of pH (Low) Insertion Peptides for Tumor Targeting, Dhammika Weerakkody, Anna Moshnikova, Mak S. Thakur, Valentina Moshnikova, Jennifer Daniels, Donald Engelman, Oleg A. Andreev, and Yana K. Reshetnyak

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pH Dependent Transfer of Nano-pores into Membrane of Cancer Cells to Induce Apoptosis, Dayanjali Wijesinghe, Mohan C. M. Arachchige, Andrew Lu, Yana K. Reshetnyak, and Oleg A. Andreev

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Dispersion of the resonant nonlinear optical susceptibility obtained with femtosecond time-domain coherent anti-Stokes Raman scattering, Shan Yang and Feruz Ganikhanov

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pHLIP peptide targets nanogold particles to tumors, Lan Yao, Jennifer Daniels, Anna Moshnikova, Sergey Kuznetsov, Aftab Ahmed, Donald M. Engelman, Yana Reshetnyak, and Oleg A. Andreev

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Erratum: pHLIP peptide targets nanogold particles to tumors (Proceedings of the National Academy of Sciences of the United States of America (2012) 110 (465-470) DOI: 10.1073/pnas.1219665110), Lan Yao, Jennifer Daniels, Anna Moshnikova, Sergey Kuznetsov, Aftab Ahmed, Donald M. Engelman, Yana K. Reshetnyak, and Oleg A. Andreev

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pHLIP-Mediated Delivery of PEGylated Liposomes to Cancer Cells, Lan Yao, Jennifer Daniels, Dayanjali Wijesinghe, Oleg A. Andreev, and Yana K. Reshetnyak

Submissions from 2012

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Efficient 18F-Labeling of Large 37-Amino-Acid pHLIP Peptide Analogues and Their Biological Evaluation, Pierre Daumar, Cindy A. Wanger-Baumann, Nagavarakishore Pillarsetty, Laura Fabrizio, Sean D. Carlin, Oleg A. Andreev, Yana K. Reshetnyak, and Jason S. Lewis

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Modulation of the pHLIP Transmembrane Helix Insertion Pathway, Alexander G Karabadzhak, Dhammika Weerakkody, Dayanjali Wijesinghe, Mak S. Thakur, Donald M. Engelman, Oleg A. Andreev, Vladislav S. Markin, and Yana K. Reshetnyak

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Generalized Pauli Principle for Particles with Distinguishable Traits, Dan Liu, Jared Vanasse, Gerhard Müller, and Michael Karbach

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Interlinking motifs and entropy landscapes of statistically interacting particles, Ping Lu, Dan Liu, Gerhard Müller, and Michael Karbach

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In Vivo pH imaging with 99mTc-pHLIP, Sven MacHoll, Matthew S. Morrison, Peter Iveson, Bente E. Arbo, Oleg A. Andreev, Yana K. Reshetnyak, Donald M. Engelman, and Edvin Johannesen