Publications from the faculty and research scientists of the Graduate School of Oceanography.

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Manuscripts from 2015

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Metatranscriptome Analyses Indicate Resource Partitioning between Diatoms in the Field, Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, and Sonya T. Dyhrman

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The Terrestrial Uranium Isotope Cycle, Morten B. Andersen, Tim Elliott, Heye Freymuth, Kenneth W.W. Sims, Yaoling Niu, and Katherine A. Kelley

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Icebergs and Sea Ice Detected with Inverted Echo Sounders, M. Andres, A. Silvano, F. Straneo, and D. R. Watts

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Phytoplankton-Bacterial Interactions Mediate Micronutrient Colimitation at the Coastal Antarctic Sea Ice Edge, Erin M. Bertrand, John P. McCrow, Ahmed Moustafa, Hong Zheng, Jeffrey B. McQuaid, Thomas O. Delmont, Anton F. Post, Rachel E. Sipler, Jenna L. Spackeen, Kai Xu, Deborah A. Bronk, David A. Hutchins, and Andrew E. Allen

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Carbon Dynamics of the Weddell Gyre, Southern Ocean, Peter J. Brown, Loïc Jullion, Peter Landschützer, Dorothee C.E. Bakker, Alberto C. Naveira Garabato, Michael P. Meredith, Sinhue Torres-Valdés, Andrew J. Watson, Mario Hoppema, Brice Loose, Elizabeth M. Jones, Maciej Telszewski, Steve D. Jones, and Rik Wanninkhof

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Application of passive sampling for measuring dissolved concentrations of organic contaminants in the water column at three marine superfund sites, Robert M. Burgess, Rainer Lohmann, Joseph P. Schubauer-Berigan, Pamela Reitsma, Monique M. Perron, Lisa Lefkovitz, and Mark G. Cantwell

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Directly Measured Currents and Estimated Transport Pathways of Atlantic Water between 59.5°N and the Iceland–Faroes–Scotland Ridge, Katelin H. Childers, Charles N. Flagg, Thomas Rossby, and Corrina Schrum

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A Marine Autonomous Surface Craft for Long-Duration, Spatially Explicit, Multidisciplinary Water Column Sampling in Coastal and Estuarine Systems, Daniel L. Codiga

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Exploration of the Windward Passage and Jamaica Channel: Tectonic Gateways to the Caribbean Sea, Marie-Helene Cormier, Ruth Blake, Dwight Coleman, Kelly Guerrier, Nixon Saintilus, Jamie Wagner, and Steven Auscavitch

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Genome Reconstructions Indicate the Partitioning of Ecological Functions Inside a Phytoplankton Bloom in the Amundsen Sea, Antarctica, Tom O. Delmont, A. M. Eren, Joseph H. Vineis, and Anton F. Post

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Exploring the Planetary Boundary for Chemical Pollution, Miriam L. Diamond, Cynthia A. de Wit, Sverker Molander, Martin Scheringer, Thomas Backhaus, Rainer Lohmann, Rickard Arvidsson, Åke Bergman, Michael Hauschild, Ivan Holoubek, Linn Persson, Noriyuki Suzuki, Marco Vighi, and Cornelius Zetzsch

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Dust, Volcanic Ash, and the Evolution of the South Pacific Gyre through the Cenozoic, Ann G. Dunlea, Richard W. Murray, Justine Sauvage, Arthur J. Spivack, Robert N. Harris, and Steven D'Hondt

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ES&T Guest Comment: Celebrating Bidleman’s 1988 “Atmospheric Processes”, Elisabeth Galarneau, Janet Arey, Roger Atkinson, Jordi Dachs, Steven Eisenreich, Tom Harner, Ronald A. Hites, Gerhard Lammel, Rainer Lohmann, Donald Mackay, Mustafa Odabasi, James F. Pankow, Martin Scheringer, Deborah Swackhamer, Yucel Tasdemir, and Frank Wania

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A Preliminary Full‐Wave Ambient‐Noise Tomography Model Spanning from the Juan de Fuca and Gorda Spreading Centers to the Cascadia Volcanic Arc, Haiying Gao and Yang Shen

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Validation of Recent Shear Wave Velocity Models in the United States with Full-Wave Simulation, Haiying Gao and Yang Shen

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Wave Boundary Layer Turbulence over Surface Waves in a Strongly Forced Condition, Tetsu Hara and Peter P. Sullivan

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Persistent Intra-Specific Variation in Genetic and Behavioral Traits in the Raphidophyte, Heterosigma akashiwo, Elizabeth L. Harvey, Susanne Menden-Deuer, and Tatiana A. Rynearson

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Big Data - a 21st Century Science Maginot Line? No-Boundary Thinking: Shifting from the Big Data Paradigm, Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe K.K. Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, and Jason H. Moore

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Deeply Dredged Submarine HIMU Glasses from the Tuvalu Islands, Polynesia: Implications for Volatile Budgets of Recycled Oceanic Crust, M. G. Jackson, K. T. Koga, A. Price, J. G. Konter, A. A.P. Koppers, V. A. Finlayson, K. Konrad, E. H. Hauri, A. Kylander-Clark, Katherine A. Kelley, and M. A. Kendrick

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The changing sources of polychlorinated dibenzo-p-dioxins and furans in sediments and the ecological risk for nekton in the lower Passaic River and Newark Bay, New Jersey, USA, Mohammed Khairy, Kirk Barrett, and Rainer Lohmann

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Spatial Distribution, Air-Water Fugacity Ratios and Source Apportionment of Polychlorinated Biphenyls in the Lower Great Lakes Basin, Mohammed Khairy, Derek Muir, Camilla Teixeira, and Rainer Lohmann

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Source Apportionment of Gaseous and Particulate PAHs from Traffic Emission Using Tunnel Measurements in Shanghai, China, Ying Liu, Siyao Wang, Rainer Lohmann, Na Yu, Chenkai Zhang, Yi Gao, Jianfu Zhao, and Limin Ma

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Gaseous and Freely-Dissolved PCBs in the Lower Great Lakes based on Passive Sampling: Spatial Trends and Air-water Exchange, Ying Liu, Siyao Wang, Carrie A. McDonough, Mohammed Khairy, Derek Muir, Paul Helm, and Rainer Lohmann

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The Gas Transfer through Polar Sea Ice Experiment: Insights into the Rates and Pathways that Determine Geochemical Fluxes, A. Lovely, Brice Loose, P. Schlosser, W. McGillis, C. Zappa, D. Perovich, S. Brown, T. Morell, D. Hsueh, and R. Friedrich

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Glacial-Interglacial Changes in Central Tropical Pacific Surface Seawater Property Gradients, Jean Lynch-Stieglitz, Pratigya J. Polissar, Allison W. Jacobel, Steven A. Hovan, Robert A. Pockalny, Mitchell Lyle, Richard W. Murray, A. Christina Ravelo, Samantha C. Bova, Ann G. Dunlea, Heather L. Ford, Jennifer E. Hertzberg, Christina A. Wertman, Ashley E. Maloney, Julia K. Shackford, Katherine Wejnert, and Ruifang C. Xie

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Continuous 1.3-Million-Year Record of East African Hydroclimate, and Implications for Patterns of Evolution and Biodiversity, Robert P. Lyons, Christopher A. Scholz, Andrew S. Cohen, John W. King, Erik T. Brown, Sarah J. Ivory, Thomas C. Johnson, Alan L. Deino, Peter N. Reinthal, Michael M. McGlue, and Margaret W. Blome

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Rapid and Gradual Modes of Aerosol Trace Metal Dissolution in Seawater, Katherine R.M. Mackey, Chia-Te Chien, Anton F. Post, Mak A. Saito, and Adina Paytan

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Use of passive samplers to detect Organochlorine Pesticides in air and water at Wetland Mountain region sites (S-SE Brazil), R. O. Meire, M. Khairy, A. C. Targino, P. M.A. Galvão, J. P.M. Torres, O. Malm, and Rainer Lohmann

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Early Spring Phytoplankton Dynamics in the Subpolar North Atlantic: The Influence of Protistan Herbivory, Françoise Morison and Susanne Menden-Deuer

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Decadal Patterns of Westerly Winds, Temperatures, Ocean Gyre Circulations and Fish Abundance: A Review, Candace A. Oviatt, Leslie Smith, M. Conor McManus, and Kimberly Hyde

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Langmuir Turbulence under Hurricane Gustav (2008), Tyler J. Rabe, Tobias Kukulka, Isaac Ginis, Tetsu Hara, Brandon G. Reichl, Eric A. D'Asaro, Ramsey R. Harcourt, and Peter Sullivan

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Evidence for Changes in Subsurface Circulation in the Late Eocene Equatorial Pacific from Radiolarian-Bound Nitrogen Isotope Values, Rebecca S. Robinson, Theodore C. Moore, Andrea M. Erhardt, and Howie D. Scher

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Concentrations, Trends, and Air-Water Exchange of PAHs and PBDEs Derived from Passive Samplers in Lake Superior in 2011, Zoe Ruge, Derek Muir, Paul Helm, and Rainer Lohmann

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Arrival of the Fukushima Radioactivity Plume in North American Continental Waters, John N. Smith, Robin M. Brown, William J. Williams, Marie Robert, Richard Nelson, and S. Bradley Moran

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Bacterial Diversity and Community Composition from Seasurface to Subseafloor, Emily A. Walsh, John B. Kirkpatrick, Scott D. Rutherford, David C. Smith, Mitchell Sogin, and Steven D'Hondt

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Bacterial and Archaeal Biogeography of the Deep Chlorophyll Maximum in the South Pacific Gyre, Emily A. Walsh, David C. Smith, Mitchell L. Sogin, and Steven D'Hondt

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New Insights into Landslide Processes Around Volcanic Islands from Remotely Operated Vehicle (ROV) Observations Offshore Montserrat, S. F.L. Watt, M. Jutzeler, P. J. Talling, Steven Carey, R. S.J. Sparks, M. Tucker, A. J. Stinton, J. K. Fisher, D. Wall-Palmer, V. Huhnerbach, and S. G. Moreton

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Description and Analysis of the Ocean Component of NOAA’s Operational Hurricane Weather Research and Forecasting (HWRF) Model, Richard M. Yablonsky, Isaac Ginis, Biju Thomas, Vijay Tallapragada, Dmitry Sheinin, and Ligia Bernardet

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The Influence of Sea Ice and Snow Cover and Nutrient Availability on the Formation of Massive Under-Ice Phytoplankton Blooms in the Chukchi Sea, Jinlun Zhang, Carin Ashjian, Robert Campbell, Yvette H. Spitz, Michael Steele, and Victoria Hill

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Simulation of Observed PCBs and Pesticides in the Water Column during the North Atlantic Bloom Experiment, Lin Zhang, Louis Thibodeaux, Lee Jones, and Rainer Lohmann

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Crustal and Upper Mantle Structure Beneath the Northeastern Tibetan Plateau from Joint Analysis of Receiver Functions and Rayleigh Wave Dispersions, Dan Zheng, Hongyi Li, Yang Shen, Jing Tan, Longbin Ouyang, and Xinfu Lu

Manuscripts from 2014

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Icehouse–Greenhouse Variations in Marine Denitrification, T. J. Algeo, P. A. Meyers, Rebecca S. Robinson, H. Rowe, and G. Q. Jiang

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Near-Bottom Circulation and Dispersion of Sediment Containing Alexandrium fundyense Cysts in the Gulf of Maine During 2010–2011, Alfredo L. Aretxabaleta, Bradford Butman, Richard P. Signell, P. Soupy Dalyander, Christopher R. Sherwood, Vitalii A. Sheremet, and Dennis J. McGillicuddy Jr.

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Rapid Eddy-Induced Modification of Subtropical Mode Water During the Kuroshio Extension System Study, Stuart P. Bishop and D. Randolph Watts

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Variations in Fe3+/∑Fe of Mariana Arc Basalts and Mantle Wedge fO2, M. N. Brounce, K. A. Kelley, and E. Cottrell

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Global Observations of Quasi-Zonal Bands in Microwave Sea Surface Temperature, C. E. Buckingham, P. C. Cornillon, F. Schloesser, and K. M. Obenour

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Tropical Cyclone–Induced Thermocline Warming and Its Regional and Global Impacts, Michael R. Bueti, Isaac Ginis, Lewis M. Rothstein, and Stephen M. Griffies

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Volatile Cycling of H2O, CO2, F, and Cl in the HIMU Mantle: A New Window Provided by Melt Inclusions from Oceanic Hot Spot Lavas at Mangaia, Cook Islands, Rita A. Cabral, Matthew G. Jackson, Kenneth T. Koga, Estelle F. Rose-Koga, Erik H. Hauri, Martin J. Whitehouse, Allison A. Price, James M.D. Day, Nobumichi Shimizu, and Katherine A. Kelley

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Baroclinic Transport Time Series of the Antarctic Circumpolar Current Measured in Drake Passage, María Paz Chidichimo, Kathleen A. Donohue, D. Randolph Watts, and Karen L. Tracey

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Geoacoustic Inversion of Ship Radiated Noise in Shallow Water Using Data from a Single Hydrophone, Steven E. Crocker, Peter L. Nielsen, James H. Miller, and Martin Siderius

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Exploring New Drilling Prospects in the Southwest Pacific, S. J. Gallagher, N. Exon, M. Seton, M. Ikehara, C. J. Hollis, R. Arculus, Steven D'Hondt, C. Foster, M. Gurnis, J. P. Kennett, R. McKay, A. Malakoff, J. Mori, K. Takai, and L. Wallace

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Upper Mantle Structure of the Cascades from Full-Wave Ambient Noise Tomography: Evidence for 3D Mantle Upwelling in the Back-Arc, Haiying Gao and Yang Shen

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On the Generation of Roll Vortices Due to the Inflection Point Instability of the Hurricane Boundary Layer Flow, Kun Gao and Isaac Ginis

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Diurnal Variability of Persistent Organic Pollutants in the Atmosphere Over the Remote Southern Atlantic Ocean, Rosalinda Gioia, Matthew MacLeod, Javier Castro-Jiménez, Luca Nizzetto, Jordi Dachs, Rainer Lohmann, and Kevin C. Jones

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Large Eddy Simulation of Sediment Transport Over Rippled Beds, J. C. Harris and Stephan Grilli

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Investigating the Effects of Mobile Bottom Fishing on Benthic Biota: A Systematic Review Protocol, Kathryn M. Hughes, Michel J. Kaiser, Simon Jennings, Robert A. McConnaughey, Roland Pitcher, Ray Hilborn, Ricardo O. Amoroso, Jeremy Collie, Jan Geert Hiddink, Ana M. Parma, and Adriaan Rijnsdorp

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Reconstruction of Pacific Ocean Bottom Water Salinity During the Last Glacial Maximum, Tania Lado Insua, Arthur J. Spivack, Dennis Graham, Steven D'Hondt, and Kathryn Moran

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The Distribution of the Mid-to-Lower Crustal Low-Velocity Zone Beneath the Northeastern Tibetan Plateau Revealed from Ambient Noise Tomography, Hongyi Li, Yang Shen, Zhongxian Huang, Xinfu Li, Meng Gong, Danian Shi, Eric Sandoval, and Aibeng Li

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Crustal Velocity Structure of the Northeastern Tibetan Plateau from Ambient Noise Surface-Wave Tomography and its Tectonic Implications, Xinfu Li, Hongyi Li, Yang Shen, Meng Gong, Danian Shi, Eric Sandvol, and Aibing Li

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Organic Pollutants and Ocean Fronts Across the Atlantic Ocean: A Review, Rainer Lohmann and Igor M. Belkin

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The Five Stable Noble Gases are Sensitive Unambiguous Tracers of Glacial Meltwater, B. Loose and W. J. Jenkins

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A Parameter Model of Gas Exchange for the Seasonal Sea Ice Zone, Brice Loose, W. R. McGillis, D. Perovich, C. J. Zappa, and P. Schlosser

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The Impact of Slab Dip Variations, Gaps and Rollback on Mantle Wedge Flow: Insights from Fluids Experiments, Julia G. MacDougall, Chris Kincaid, Sara Szwaja, and Karen M. Fischer

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Estimates of Micro-, Nano-, and Picoplankton Contributions to Particle Export in the Northeast Pacific, B. L. Mackinson, S. Bradley Moran, M. W. Lomas, G. M. Stewart, and R. P. Kelly

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Significance of Population Centers As Sources of Gaseous and Dissolved PAHs in the Lower Great Lakes, Carie A. McDonough, Mohammed A. Khairy, Derek C G Muir, and Rainer Lohmann

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Changing pH in the Surface Ocean, Michael E.Q. Pilson

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Black Carbon Concentrations and Sources in the Marine Boundary Layer of the Tropical Atlantic Ocean using Four Methodologies, K. Pohl, M. Cantwell, P. Herckes, and Rainer Lohmann

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Sea State Dependence of the Wind Stress Over the Ocean Under Hurricane Winds, Brandon G. Reichl, Tetsu Hara, and Isaac Ginis

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First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins, Maxim Rubin-Blum, Gilad Antler, Rami Tsadok, Eli Shemesh, James A. Austin Jr., Dwight F. Coleman, Beverly N. Goodman-Tchernov, Zvi Ben-Avraham, and Dan Tchernov

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The Air-Sea Interface and Surface Stress Under Tropical Cyclones, Alexander V. Soloviev, Roger Lukas, Mark A. Donelan, Brian K. Haus, and Isaac Ginis

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Basaltic Volcaniclastics from the Challenger Deep Forearc Segment, Mariana Convergent Margin: Implications for Tectonics and Magmatism of the Southernmost Izu–Bonin–Mariana Arc, Robert J. Stern, Minghua Ren, Katherine A. Kelley, Yasuhiko Ohara, Fernando Martinez, and Sherman H. Bloomer

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Impact of Dominant Breaking Waves on Air–Sea Momentum Exchange and Boundary Layer Turbulence at High Winds, Nobuhiro Suzuki, Tetsu Hara, and Peter P. Sullivan

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An Anomalous Near-Bottom Cross-Shelf Intrusion of Slope Water on the Southern New England Continental Shelf, D. S. Ullman, D. L. Codiga, A. Pfeiffer-Herbert, and Christopher R. Kincaid

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Mesoscale Convective System Surface Pressure Anomalies Responsible for Meteotsunamis Along the U.S. East Coast on June 13th, 2013, Christina A. Wertman, Richard M. Yablonsky, Yang Shen, John Merrill, Christopher R. Kincaid, and Robert A. Pockalny

Manuscripts from 2013

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Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study, Philip W. Boyd, Tatiana A. Rynearson, Evelyn A. Armstrong, Feixue Fu, Kendra Hayashi, Zhangxi Hu, David A. Hutchins, Raphael M. Kudela, Elena Litchman, Margaret R. Mulholland, Uta Passow, Robert F. Strzepek, Kerry A. Whittaker, Elizabeth Yu, and Mridul K. Thomas

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Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study, Philip W. Boyd, Tatiana A. Rynearson, Evelyn A. Armstrong, Feixue Fu, Kendra Hayashi, Zhangxi Hu, David A. Hutchins, Raphael M. Kudela, Elena Litchman, Margaret R. Mulholland, Uta Passow, Robert F. Strzepek, Kerry A. Whittaker, Elizabeth Yu, and Mridul K. Thomas

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Redox heterogeneity in MORB as a function of mantle source, Elizabeth Cottrell and Katherine A. Kelley

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IODP Expedition 329: Life and Habitability Beneath the Seafloor of the South Pacific Gyre, Steven D'Hondt, Fumio Inagaki, and Carlos Alvarez Zarikian

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Assessment and Use of NGR Instrumentation on the JOIDES Resolution to Quantify U, Th, and K Concentrations in Marine Sediment, Ann G. Dunlea, Richard W. Murray, Robert N. Harris, Maxim A. Vasiliev, Helen Evans, Arthur J. Spivack, and Steven D'Hondt

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Comparing sediment equilibrium partitioning and passive sampling techniques to estimate benthic biota PCDD/F concentrations in Newark Bay, New Jersey (U.S.A.), Carey L. Friedman and Rainer Lohmann

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Vibrio cholerae Exploits Sub-Lethal Concentrations of a Competitor-Produced Antibiotic to Avoid Toxic Interactions, Jason R. Graff, Stephanie R. Forschner-Dancause, Susanne Menden-Deuer, Richard A. Long, and David C. Rowley

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Swim Speed, Behavior, and Movement of North Atlantic Right Whales (Eubalaena glacialis) in Coastal Waters of Northeastern Florida, USA, James H.W. Hain, Joy D. Hampp, Shelia A. McKenney, Julie A. Albert, and Robert D. Kenney

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Feasibility of using low density polyethylene sheets to detect atmospheric organochlorine pesticides in Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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Field Calibration of Low Density Polyethylene Passive Samplers for Gaseous POPs, Mohammed A. Khairy and Rainer Lohmann

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Source Apportionment and Risk Assessment of Polycyclic Aromatic Hydrocarbons in the Atmospheric Environment of Alexandria, Egypt, Mohammed A. Khairy and Rainer Lohmann

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SCIMPI: A New Borehole Observatory, T. Lado-Insua, K. Moran, I. Kulin, S. Farrington, and J. B. Newman

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VERTICAL EDDY DIFFUSION AS A KEY MECHANISM FOR REMOVING PERFLUOROOCTANOIC ACID (PFOA) FROM THE GLOBAL SURFACE OCEANS, Rainer Lohmann, Elena Jurado, Henk A. Dijkstra, and Jordi Dachs

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Concentrations, Fluxes and Residence Time of PBDEs Across the Tropical Atlantic Ocean, Rainer Lohmann, Jana Klanova, Petr kukucka, Shifra Yonis, and Kevyn Bollinger

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(Viewpoint): Science Should Guide TSCA Reform, Rainer Lohmann, Heather M. Stapleton, and Ronald A. Hites

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Climatic Variability of the Circulation in the Rhode Island Sound: A Modeling Study, Yiyong Luo, Lew Rothstein, Qianqian Liu, and Shuwen Zhang

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Water as a New Matrix for Global Assessment of Hydrophilic POPs, Derek Muir and Rainer Lohmann

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Heterogeneities from the first 100 million years recorded in deep mantle noble gases from the Northern Lau Back-arc Basin, Maria K. Peto, Sujoy Mukhopadhyay, and Katherine A. Kelley

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The challenges of using polyethylene passive samplers to determine dissolved concentrations of parent and alkylated PAHs under cold and saline conditions, Pamela J. Reitsma, Dave Adelman, and Rainer Lohmann

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Geodynamic Evolution of a Forearc Rift in the Southernmost Mariana Arc, Julia M. Ribeiro, Robert J. Stern, Fernando Martinez, Osamu Ishizuka, Susan G. Merle, Katherine Kelley, Elizabeth Y. Anthony, Minghua Ren, Yasuhiko Ohara, Mark Reagan, Guillaume Girard, and Sherman Bloomer

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Analysis of Energy Flow in US GLOBEC Ecosystems Using End-to-End Models, James J. Ruzicka, John H. Steele, Sarah K. Gaichas, Tosca Ballerini, Dian J. Gifford, Richard D. Brodeur, and Eileen E. Hofmann

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Using Hierarchical Bayes to Understand Movement, Health, and Survival in the Endangered North Atlantic Right Whale, Robert S. Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, and James S. Clark

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John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, and Dale B. Haidvogel

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Processing of Underway CTD Data, D. S. Ullman and David Hebert

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Organochlorine Pollutants in Western Antarctic Peninsula Sediments and Benthic Deposit Feeders, Lin Zhang, Rebecca Dickhut, Dave DeMaster, Kari Pohl, and Rainer Lohmann

Manuscripts from 2012

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Identifying Reference Genes with Stable Expression from High Throughput Sequence Data, Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, and Sonya T. Dyhrman