Publications from the Department of Cell and Molecular Biology faculty at the University of Rhode Island.

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Submissions from 2016

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Contributions of Tropodithietic Acid and Biofilm Formation to the Probiotic Activity of Phaeobacter Inhibens, Marta Gomez-Chiarri, D C. Rowley, and David R. Nelson

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The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia, Edward C. Stanley, Paul A. Azzinaro, David A. Vierra, Niall G. Howlett, and Steven Q. Irvine

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PSAMM: A Portable System for the Analysis of Metabolic Models, Jon Lund Steffensen, Keith Dufault-Thompson, and Ying Zhang

Submissions from 2015

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Effects of CO2 on Growth Rate, C:N:P, and Fatty Acid Composition of Seven Marine Phytoplankton Species, Andrew L. King, Bethany D. Jenkins, Joselynn R. Wallace, Yuan Liu, Gary H. Wikfors, Lisa M. Milke, and Shannon L. Meseck

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Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22, Edward Spinard, Linda Kessner, Marta Gomez-Chiarri, D. C. Rowley, and David R. Nelson

Submissions from 2014

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Location of Dual Sites in E. coli FtsZ Important for Degradation by ClpXP; One at the C-Terminus and One in the Disordered Linker, Jodi L. Camberg, Marissa G. Viola, Leslie Rea, Joel R. Hoskins, and Sue Wickner

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Meeting Report: Ocean ‘Omics Science, Technology and Cyberinfrastructure: Current Challenges and Future Requirements (August 20-23, 2013), Jack A. Gilbert, Gregory J. Dick, Bethany D. Jenkins, John Heidelberg, Eric Allen, Katherine R.M. Mackey, and Edward F. DeLong

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Flexible and Scalable Genotyping-by-Sequencing Strategies for Population Studies, Christopher Heffelfinger, Christopher A. Fragoso, Maria A. Moreno, John D. Overton, John P. Mottinger, Hongyu Zhao, Joe Tohme, and Stephen L. Dellaporta

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Identification of the Maize Gravitropism Gene lazy plant1 by a Transposon-Tagging Genome Resequencing Strategy, Thomas P. Howard III, Andrew P. Hayward, Anthony Tordillos, Christopher Fragoso, Maria A. Moreno, Joe Tohme, Albert P. Kausch, John P. Mottinger, and Stephen L. Dellaporta

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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans Through Transcriptome Sequencing, Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany D. Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kurdryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G.B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sara R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, and Alexandra Z. Worden

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Cyclic Peptide-Capped Gold Nanoparticles for Enhanced siRNA Delivery, Amir Nasrolahi Shirazi, Karissa L. Paquin, Niall G. Howlett, Dindyal Mandal, and Keykavous Parang

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Pan-Genome Analyses Identify Lineage- and Niche-Specific Markers of Evolution and Adaptation in Epsilonproteobacteria, Ying Zhang and Stefan M. Sievert

Submissions from 2013

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Microbial Community Structure of a Leachfield Soil: Response to Intermittent Aeration and Tetracycline Addition, Janet A. Atoyan, Andrew M. Staroscik, David R. Nelson, Erika L. Patenaude, David A. Potts, and José A. Amador

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Coordinate Nuclear Targeting of the FANCD2 and FANCI Proteins via a FANCD2 Nuclear Localization Signal, Rebecca A. Boisvert, Meghan A. Rego, Paul A. Azzinaro, Maurizio Mauro, and Niall G. Howlett

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Thalassiosira spp. Community Composition Shifts in Response to Chemical and Physical Forcing in the Northeast Pacific Ocean, P. Dreux Chappell, LeAnn P. Whitney, Traci L. Haddock, Susanne Menden-Deuer, Eric G. Roy, Mark L. Wells, and Bethany D. Jenkins

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Towards Independent Particle Reconstruction from Cryogenic Transmission Electron Microscopy, W. Lewis Collier, Jean Yves Hervé, and Lenore Martin

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Characterization of Plp, a Phosphatidylcholine-Specific Phospholipase and Hemolysin of Vibrio anguillarum, Ling Li, Xiangyu Mou, and David R. Nelson

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Nutritional Basis for Colonization Resistance by Human Commensal Escherichia coli Strains HS and Nissle 1917 Against E. coli O157:H7 in the Mouse Intestine, Rosalie Maltby, Mary P. Leatham-Jensen, Terri Gibson, Paul S. Cohen, and Tyrrell Conway

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Immunization with Cross-Conserved H1N1 Influenza CD4+ T-Cell Epitopes Lowers Viral Burden in HLA DR3 Transgenic Mice, Leonard Moise, Ryan Tassone, Howard Latimer, Frances Terry, Lauren Levitz, John P. Haran, Ted M. Ross, Christine Boyle, William D. Martin, and Anne S. De Groot

Submissions from 2012

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The Transcriptome and Proteome of the Diatom Thalassiosira Pseudonana Reveal a Diverse Phosphorus Stress Response, Sonya T. Dyhrman, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa Mercier, Harriet Alexander, LeAnn P. Whitney, Andrea Drzewianowski, Vladimir V. Bulygin, Erin M. Bertrand, Zhijin Wu, Claudia Benitez-Nelson, and Abigail Heithoff

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Pollen Sterility—A Promising Approach to Gene Confinement and Breeding for Genetically Modified Bioenergy Crops, Joel P. Hague, Stephen L. Dellaporta, Maria A. Moreno, Chip Longo, Kimberly Nelson, and Albert P. Kausch

Submissions from 2011

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Characterization of Putative Iron Responsive Genes as Species-specific Indicators of Iron Stress in Thalassiosiroid Diatoms, Bethany D. Jenkins, LeAnn P. Whitney, Jeremy J. Lins, Margaret P. Hughes, Mark L. Wells, and P. Dreux Chappell

Submissions from 2010

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The Chitobiose Transporter, chbC, is Required for Chitin Utilization in Borrelia Burgdorferi, Ryan G. Rhodes, Janet A. Atoyan, and David R. Nelson

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Empirical Bayes Analysis of Sequencing-Based Transcriptional Profiling Without Replicates, Zhijin Wu, Bethany D. Jenkins, Tatiana A. Rynearson, Sonya T. Dyhrman, Mak A. Saito, Melissa Mercier, and LeAnn P. Whitney

Submissions from 2009

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Chitobiose Utilization in Borrelia burgdorferi is Dually Regulated by RpoD and RpoS, Ryan G. Rhodes, Wendy M. Coy, and David R. Nelson

Submissions from 2008

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Development of Methods for the Genetic Manipulation of Flavobacterium columnare, Andrew M. Staroscik, David W. Hunnicutt, Kate E. Archibald, and David R. Nelson

Submissions from 2005

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Characterization of the Interactions Between the Active Site of a Protein Tyrosine Kinase and a Divalent Metal Activator, Xiaofeng Lin, Marina K. Ayrapetov, and Gongqin Sun

Submissions from 2004

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Gel Shift Analysis of the empA Promoter Region in Vibrio Anguillarum, Steven M. Denkin, Pedja Sekaric, and David R. Nelson