Publications from the Department of Cell and Molecular Biology faculty at the University of Rhode Island.

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Submissions from 2023

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Salinity Effects on Growth and Nutritional Content of Newly Isolated Microalgal with Potential Use in The Shrimp-Hatcheries, Wa Iba, Abdul Muis Balubi, Lenore M. Martin, Michael A. Rice, and Gary H. Wikfors

Submissions from 2022

Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization, James R. Crosby, Tunyaboon Laemthong, Ryan G. Bing, Ke Zhang, Tania N.N. Tanwee, Gina L. Lipscomb, Dmitry A. Rodionov, Ying Zhang, Michael W.W. Adams, and Robert M. Kelly

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Reconstruction and Analysis of Thermodynamically Constrained Models Reveal Metabolic Responses of a Deep-Sea Bacterium to Temperature Perturbations, Keith Dufault-Thompson, Chang Nie, Huahua Jian, Fengping Wang, and Ying Zhang

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Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand, Angkana T. Huang, Saki Takahashi, Henrik Salje, Lin Wang, Bernardo Garcia-Carreras, Kathryn Anderson, Timothy Endy, Stephen Thomas, Alan L. Rothman, Chonticha Klungthong, Anthony R. Jones, Stefan Fernandez, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Isabel Rodriguez-Barraquer, and Derek A.T. Cummings

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The Cilioprotist Cytoskeleton, a Model for Understanding How Cell Architecture and Pattern Are Specified: Recent Discoveries from Ciliates and Comparable Model Systems, Linda A. Hufnagel

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Identification of Lethal Inhibitors and Inhibitor Combinations for Mono-Driver versus Multi-Driver Triple-Negative Breast Cancer Cells, Geng Chia Ku, Abygail G. Chapdelaine, Marina K. Ayrapetov, and Gongqin Sun

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Clinical and epidemiological features in hospitalized young children with acute gastroenteritis in Taiwan: A multicentered surveillance through 2014–2017, Fang Ju Lin, Yi Chuan Huang, Yhu Chering Huang, Li Min Huang, Ching Chuan Liu, Hsin Chi, Hsiao Chuan Lin, Yu Huai Ho, Fang Tzy Wu, Jung Jung Mu, Chao A. Hsiung, Ching Yi Huang, and Shu Man Shih

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Deep learning for neural decoding in motor cortex, Fangyu Liu, Saber Meamardoost, Rudiyanto Gunawan, Takaki Komiyama, Claudia Mewes, Ying Zhang, Eun Jung Hwang, and Linbing Wang

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A Mollicutes Metagenome-Assembled Genome from the Gut of the Pteropod Limacina rangii, Zachary T. Pimentel, Patricia S. Thibodeau, Bongkeun Song, and Ying Zhang

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Two canonically aerobic foraminifera express distinct peroxisomal and mitochondrial metabolisms, Christopher Powers, Fatma Gomaa, Elizabeth B. Billings, Daniel R. Utter, David J. Beaudoin, Virginia P. Edgcomb, Colleen M. Hansel, Scott D. Wankel, Helena L. Filipsson, Ying Zhang, and Joan M. Bernhard

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Individual, Household, and Community Drivers of Dengue Virus Infection Risk in Kamphaeng Phet Province, Thailand, Gabriel Ribeiro Dos Santos, Darunee Buddhari, Sopon Iamsirithaworn, Direk Khampaen, Alongkot Ponlawat, Thanyalak Fansiri, Aaron Farmer, Stefan Fernandez, Stephen Thomas, Isabel Rodriguez Barraquer, Anon Srikiatkhachorn, Angkana T. Huang, Derek A.T. Cummings, Timothy Endy, Alan L. Rothman, Henrik Salje, and Kathryn B. Anderson

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A Decade of Time Series Sampling Reveals Thermal Variation and Shifts in Pseudo-nitzschia Species Composition That Contribute to Harmful Algal Blooms in an Eastern US Estuary, Katherine M. Roche, Alexa R. Sterling, Tatiana A. Rynearson, Matthew J. Bertin, and Bethany D. Jenkins

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Innate Immune Responses of Vaccinees Determine Early Neutralizing Antibody Production After ChAdOx1nCoV-19 Vaccination, Ching Fen Shen, Chia Liang Yen, Yi Chen Fu, Chao Min Cheng, Tzu Chi Shen, Pei De Chang, Kuang Hsiung Cheng, Ching Chuan Liu, Yu Tzu Chang, Po Lin Chen, Wen Chien Ko, and Chi Chang Shieh

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Emerging harmful algal blooms caused by distinct seasonal assemblages of a toxic diatom, Alexa R. Sterling, Riley D. Kirk, Matthew J. Bertin, Tatiana A. Rynearson, David G. Borkman, Marissa C. Caponi, Jessica Carney, Katherine A. Hubbard, Meagan A. King, Lucie Maranda, Emily J. McDermith, Nina R. Santos, Jacob P. Strock, Erin M. Tully, Samantha B. Vaverka, Patrick D. Wilson, and Bethany D. Jenkins

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A Ribosomal Protein Homolog Governs Gene Expression and Virulence in a Bacterial Pathogen, Hannah S. Trautmann and Kathryn M. Ramsey

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Dengue virus downregulates TNFR1- and TLR3-stimulated NF-kB activation by targeting RIPK1, Darshika J. Udawatte, Diane M. Lang, Jeffrey R. Currier, Carey L. Medin, and Alan L. Rothman

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Degradation of the E. coli antitoxin MqsA by the proteolytic complex ClpXP is regulated by zinc occupancy and oxidation, Margaret R. Vos, Benjamin Piraino, Christopher J. LaBreck, Negar Rahmani, Catherine E. Trebino, Marta Schoenle, Wolfgang Peti, Jodi L. Camberg, and Rebecca Page

Submissions from 2021

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Durable changes in the gut microbiome in survivors of childhood acute lymphoblastic leukemia, Roma Bhuta, Bradley DeNardo, Jing Wang, Janet Atoyan, Ying Zhang, David Nelson, and Jason Shapiro

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Correlation between reported dengue illness history and seropositivity in rural Thailand, Darunee Buddhari, Kathryn B. Anderson, Gregory D. Gromowski, Richard G. Jarman, Sopon Iamsirithaworn, Butsaya Thaisomboonsuk, Taweewun Hunsawong, Anon Srikiatkhachorn, Alan L. Rothman, Anthony R. Jones, Stefan Fernandez, Stephen J. Thomas, and Timothy P. Endy

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Cyclin-dependent kinase-mediated phosphorylation of FANCD2 promotes mitotic fidelity, Juan A. Cantres-Velez, Justin L. Blaize, David A. Vierra, Rebecca A. Boisvert, Jada L. Garzon, Benjamin Piraino, Winnie Tan, Andrew J. Deans, and Niall G. Howlett

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Proteomic signatures of myeloid derived suppressor cells from liver and lung metastases reveal functional divergence and potential therapeutic targets, Nicholas A. DaSilva, Benjamin J. Barlock, Prajna Guha, Chandra C. Ghosh, Catherine E. Trebino, Jodi L. Camberg, Steven C. Katz, and David C. Rowley

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Fabrication of PNIPAm-based thermoresponsive hydrogel microwell arrays for tumor spheroid formation, Dinesh Dhamecha, Duong Le, Tomali Chakravarty, Kalindu Perera, Arnob Dutta, and Jyothi U. Menon

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The Stress-Active Cell Division Protein ZapE Alters FtsZ Filament Architecture to Facilitate Division in Escherichia coli, Eric C. DiBiasio, Rebecca A. Dickinson, Catherine E. Trebino, Colby N. Ferreira, Josiah J. Morrison, and Jodi L. Camberg

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Entomological risk assessment for dengue virus transmission during 2016-2020 in Kamphaeng Phet, Thailand, Thanyalak Fansiri, Darunee Buddhari, Nattaphol Pathawong, Arissara Pongsiri, Chonticha Klungthong, Sopon Iamsirithaworn, Anthony R. Jones, Stefan Fernandez, Anon Srikiatkhachorn, Alan L. Rothman, Kathryn B. Anderson, Stephen J. Thomas, Timothy P. Endy, and Alongkot Ponlawat

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Identification of Group A Streptococcus Genes Directly Regulated by CsrRS and Novel Intermediate Regulators, Meredith B. Finn, Kathryn M. Ramsey, Simon L. Dove, and Michael R. Wessels

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Improved transformation efficiency of group A Streptococcus by inactivation of a type I restriction modification system, Meredith B. Flynn, Kathryn M. Ramsey, Hunter J. Tolliver, Simon L. Dove, and Michael R. Wessels

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Effect of Low-Passage Number on Dengue Consensus Genomes and Intra-host Variant Frequencies, Christian K. Fung, Tao Li, Simon Pollett, Maria Theresa Alera, In-Kyu Yoon, Jun Hang, Louis Macareo, Anon Srikiatkhachorn, Damon Ellison, Alan L. Rothman, Stefan Fernandez, Richard G. Jarman, and Irina Maljkovic Berry

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QuickIsoSeq for Isoform Quantification in Large-Scale RNA Sequencing, Ramya Gamini, Reiko Nakashima, Wen He, Ying Huang, Ying Zhang, and Shanrong Zhao

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Multiple integrated metabolic strategies allow foraminiferan protists to thrive in anoxic marine sediments, Fatma Gomaa, Daniel R. Utter, Christopher Powers, David J. Beaudoin, Virginia P. Edgcomb, Helena L. Filipsson, Colleen M. Hansel, Scott D. Wankel, Ying Zhang, and Joan M. Bernhard

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Translation | Ribosome regulation by EF-G and EF-Tu, Steven T. Gregory

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Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core, Yunha Hwang, Dirk Schulze-Makuch, Felix L. Arens, Johan S. Saenz, Panagiotis S. Adam, Christof Sager, Till L.V. Bornemann, Weinshu Zhao, Ying Zhang, Alessandro Airo, Michael Schloter, and Alexander J. Probst

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Computational Study of Helical and Helix-Hinge-Helix Conformations of an Anti-Microbial Peptide in Solution by Molecular Dynamics and Vibrational Analysis, Faramarz Joodaki, Lenore M. Martin, and Michael L. Greenfield

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Corrigendum: A Paper-Based IL-6 Test Strip Coupled With a Spectrum-Based Optical Reader for Differentiating Influenza Severity in Children (Front. Bioeng. Biotechnol., (2021), 9, (752681), 10.3389/fbioe.2021.752681), Sheng Wen Lin, Ching Fen Shen, Ching Chuan Liu, and Chao Min Cheng

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Draft Genome Sequence of Salegentibacter sp. Strain BDJ18, a Plankton-Associated Bacterium in the Northeast Atlantic Ocean, Elizabeth J. McDermith, Alexa R. Sterling, Matthew J. Bertin, and Bethany D. Jenkins

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FARCI: Fast and Robust Connectome Interference, Saber Meamardoost, Mahasaweta Bhattacharya, Eun Jung Hwang, Takaki Komiyama, Claudia Mewes, Linbing Wang, Ying Zhang, and Rudiyanto Gunawan

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Correlation between pathogenic determinants associated with clinically isolated non-typhoidal Salmonella, Boimpoundi Eunice Flavie Ouali, Tsyr Huei Chiou, Jenn Wei Chen, I. Chu Lin, Ching Chuan Liu, Yu Chung Chiang, Tzong Shiann Ho, and Hao Ven Wang

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Control of a Programmed Cell Death Pathway in Pseudomonas aeruginosa by an Antiterminator, Jennifer M. Peña, Samantha M. Prezioso, Kirsty A. McFarland, Tracy K. Kambara, Kathryn M. Ramsey, Padraig Deighan, and Simon L. Dove

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Impaired Host Response and the Presence of Acinetobacter baumannii in the Serum Microbiome of Type-II Diabetic Patients, Dasith Perera, Sarah E. Kleinstein, Benjamin Hanson, Hatice Hasturk, Ryan Eveloff, Marcelo Freire, and Matthew M. Ramsey

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Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica, Zachary T. Pimentel, Keith Dufault-Thompson, Kayla T. Russo, Abigail K. Scro, Roxanne M. Smolowitz, Marta Gomez-Chiarri, and Ying Zhang

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Transcriptional regulation of plant biomass degradation and carbohydrate utilization genes in the extreme thermophile caldicellulosiruptor bescii, Dmitry A. Rodionov, Irina A. Rodionova, Vladimir A. Rodionov, Aleksandr A. Arzamasov, Ke Zhang, Gabriel M. Rubinstein, Tania N. N. Tanwee, Ryan G. Bing, James R. Crosby, Intawat Nookaew, Mirko Basen, Steven D. Brown, Charlotte M. Wilson, Dawn M. Klingeman, Farris L. Poole, Ying Zhang, Robert M. Kelly, and Michael W.W. Adams

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Draft Genome Sequence of Pseudoalteromonas sp. Strain JC3, Margaret E. Rosario, Jacqueline Camm, Damian Cavanagh, David C. Rowley, and David R. Nelson

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Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection, Henrik Salje, Maria Theresa Alera, Mary Noreen Chua, Taweewun Hunsawong, Damon Ellison, Anon Srikiatkhachorn, Richard G. Jarman, Gregory D. Gromowski, Isabel Rodriguez-Barraquer, Simon Cauchemez, Derek A.T. Cummings, Louis Macareo, In Kyu Yoon, Stefan Fernandez, and Alan L. Rothman

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Longitudinal Analysis of Dengue Virus–Specific Memory T Cell Responses and Their Association With Clinical Outcome in Subsequent DENV Infection, Luis Alberto Sanchez-Vargas, Kathryn B. Anderson, Anon Srikiatkhachorn, Jeffrey R. Currier, Heather Friberg, Timothy P. Endy, Stefan Fernandez, Anuja Mathew, and Alan L. Rothman

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The impact of dengue illness on social distancing and caregiving behavior, Kathryn L. Schaber, Amy C. Morrison, William H. Elson, Helvio Astete-Vega, Jhonny J. Córdova-López, Esther Jennifer Rios López, W. Lorena Quiroz Flores, Alfonso S. Vizcarra Santillan, Thomas W. Scott, Lance A. Waller, Uriel Kitron, Christopher M. Barker, T. Alex Perkins, Alan L. Rothman, Gonzalo M. Vazquez-Prokopec, John P. Elder, and Valerie A. Paz-Soldan

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Disease-driven Reduction in Human Mobility Influences Human-Mosquito Contacts and Dengue Transmission Dynamics, Kathryn L. Schaber, T. Alex Perkins, Alun L. Lloyd, Lance A. Waller, Uriel Kitron, Valerie A. Paz-Soldan, John P. Elder, Alan L. Rothman, David J. Civitello, William H. Elson, Amy C. Morrison, Thomas W. Scott, and Gonzalo M. Vazquez-Prokopec

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A Survey of Spontaneous Antibiotic-Resistant Mutants of the Halophilic, Thermophilic Bacterium Rhodothermus marinus, Sophia Silvia, Samantha A. Donahue, Erin E. Killeavy, Gerwald Jogi, and Steven T. Gregory

Standardization and evaluation of an Anti-ZIKV IgM ELISA assay for the serological diagnosis of zika virus infection, Kanittha Sirikajornpan, Piyarat Suntarattiwong, Detchvijitr Suwanpakdee, Sutchana Tabprasit, Darunee Buddhari, Butsaya Thaisomboonsuk, Chonticha Klungthong, Yongyuth Poolpanichupatam, Rome Buathong, Anon Srikiatkhachorn, Anthony Jones, Stefan Fernandez, and Taweewun Hunsawong

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Extreme Levels of Ocean Acidification Restructure the Plankton Community and Biogeochemistry of a Temperate Coastal Ecosystem: A Mesocosm Study, Carsten Spisla, Jan Taucher, Lennart T. Bach, Mathias Haunost, Tim Boxhammer, Andrew L. King, Bethany D. Jenkins, Joselynn R. Wallace, Andrea Ludwig, Jana Meyer, Paul Stange, Fabrizio Minutolo, Kai T. Lohbeck, Alice Nauendorf, Verena Kalter, Silke Lischka, Michael Sswat, Isabel Dörner, Stefanie M. H. Ismar-Rebitz, Nicole Aberle, Jaw C. Yong, Jean-Marie Bouquet, Anna K. Lechtenbörger, Peter Kohnert, Michael Krudewig, and Ulf Riebesell

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Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance, Maxim S. Svetlov, Egor A. Syroegin, Elena V. Aleksandrova, Gemma C. Atkinson, Steven Gregory, Alexander S. Mankin, and Yury S. Polikanov

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Structural Basis for Virulence Activation of Francisella tularensis, Brady A. Travis, Kathryn M. Ramsey, Samantha M. Prezioso, Thomas Tallo, Jamie M. Wandzilak, Allen Hsu, Mario Borgnia, Alberto Bartesaghi, Simon L. Dove, Richard G. Brennan, and Maria A. Schumacher

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Viral suppression of ripk1-mediated signaling, Darshika J. Udawatte and Alan L. Rothman

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Temporally Integrated Single Cell RNA Sequencing Analysis of PBMC from Experimental and Natural Primary Human DENV-1 Infections, Adam T. Waickman, Heather Friberg, Gregory D. Gromowski, Wiriya Rutvisuttinunt, Tao Li, Hayden Siegfried, Kaitlin Victor, Michael K. McCracken, Stefan Fernandez, Anon Srikiatkhachorn, Damon Ellison, Richard G. Jarman, Stephen J. Thomas, Alan L. Rothman, Timothy Endy, and Jeffrey R. Currier

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Monomeric IgA Antagonizes IgG-Mediated Enhancement of DENV Infection, Adam D. Wegman, Hengsheng Fang, Alan L. Rothman, Stephen J. Thomas, Timothy P. Endy, Michael K. McCracken, Jeffrey R. Currier, Heather Friberg, Gregory D. Gromowski, and Adam T. Waickman

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Genome-scale metabolic model of caldicellulosiruptor bescii reveals optimal metabolic engineering strategies for bio-based chemical production, Ke Zhang, Weishu Zhao, Dmitry A. Rodionov, Gabriel M. Rubinstein, Diep N. Nguyen, Tania N.N. Tanwee, James Crosby, Ryan G. Bing, Robert M. Kelly, Michael W.W. Adams, and Ying Zhang

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Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network, Zhenshuo Zhu, Xiaolong Wu, Qun Li, Juqing Zhang, Shuai Yu, Qiaoyan Shen, Zhe Zhou, Qin Pan, Wei Yue, Dezhe Qin, Ying Zhang, Wenxu Zhao, Rui Zhang, Sha Peng, Na Li, Shiqiang Zhang, Anmin Lei, Yi Liang Miao, Zhonghua Liu, Xingqi Chen, Huayan Wang, Mingzhi Liao, and Jinlian Hua

Submissions from 2020

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An Innovative, Prospective, Hybrid Cohort-Cluster Study Design to Characterize Dengue Virus Transmission in Multigenerational Households in Kamphaeng Phet, Thailand, Kathryn B. Anderson, Darunee Buddhari, Anon Srikiatkhachorn, Gregory D. Gromowski, Sopon Iamsirithaworn, Alden L. Weg, Damon W. Ellison, Louis Macareo, Derek A T Cummings, In-Kyu Yoon, Ananda Nisalak, Alongkot Ponlawat, Stephen J. Thomas, Stefan Fernandez, Richard G. Jarman, Alan L. Rothman, and Timothy P. Endy

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Stavudine exposure results in developmental abnormalities by causing DNA damage, inhibiting cell proliferation and inducing apoptosis in mouse embryos, Rui-Fang Ao, Yu-Xiang Liang, Xiao-Qing Liu, Kui Tan, Xiaoling Wang, Dan Liu, Ting Zhang, Gongqin Sun, and Jun Xie

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Thermal range and physiological tolerance mechanisms in two shark species from the northwest Atlantic, Abigail B. Bockus, Christopher J. Labreck, Jodi L. Camberg, Jeremy S. Collie, and Brad A. Seibel

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A combinatorial strategy for overcoming primary and acquired resistance of MEK inhibition in colorectal cancer, Junjun Chen, Jie Dai, Zhiming Kang, Ting Yang, Qi Zhao, Jinxiu Zheng, Xinxin Zhang, Jisheng Zhang, Jun Xu, Gongqin Sun, Lijun Yang, and Tao Yang

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Molecular basis for receptor tyrosine kinase A-loop tyrosine transphosphorylation, Lingfeng Chen, William M. Marsiglia, Huaibin Chen, Joseph Katigbak, Hediye Erdjument-Bromage, David J. Kemble, Lili Fu, Jinghong Ma, Gongqin Sun, Yingkai Zhang, Guang Liang, Thomas A. Neubert, Xiaokun Li, Nathaniel J. Traaseth, and Moosa Mohammadi

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Peptidoglycan sensing prevents quiescence and promotes quorum-independent colony growth of uropathogenic Escherichia coli, Eric C. DiBiasio, Hilary J. Ranson, James R. Johnson, David C. Rowley, Paul S. Cohen, and Jodi L. Camberg

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Heterogeneity of Dengue Illness in Community-Based Prospective Study, Iquitos, Peru, William H. Elson, Robert C. Reiner, Crystyan Siles, Isabel Bazan, Stalin Vilcarromero, Amy R. Riley-Powell, Ania B. Kawiecki, Helvio Astete, Robert D. Hontz, Chris M. Barker, Gonzalo M. Vazquez-Prokopec, Amy C. Morrison, Thomas W. Scott, John P. Elder, Alan L. Rothman, and Valerie A. Paz-Soldan

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Measuring Health Related Quality of Life for Dengue Patients in Iquitos, Peru, William H. Elson, Amy R. Riley-Powell, Amy C. Morrison, Esther E. Gotlieb, Erik J. Groessl, Jhonny J. Cordova, J. Esther Rios, W. Lorena Quiroz, Alfonso S. Vizcarra, Robert C. Reiner, Christopher M. Barker, Gonzalo M. Vazquez-Prokopec, Thomas W. Scott, Alan L. Rothman, John P. Elder, and Valerie A. Paz-Soldan

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Traffic jam at the nuclear pore: All roads lead to nucleocytoplasmic transport defects in ALS/FTD, Claudia Fallini, Bilal Khalil, Courtney L. Smith, and Wilfried Rossoll

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Next-generation sequencing of 11 HLA loci in a large dengue vaccine cohort from the Philippines, Aviva Geretz, Lauryn Cofer, Philip K. Ehrenberg, Jeffrey R. Currier, In Kyu Yoon, Marla T.P. Alera, Richard Jarman, Alan L. Rothman, and Rasmi Thomas

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Immune-engineered H7N9 Influenza Hemagglutinin Improves Protection against Viral Influenza Virus Challenge, Hyesun Jang, Lauren M. Meyers, Christine Boyle, Anne S. De Groot, Leonard Moise, and Ted M. Ross

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Tiamulin-Resistant Mutants of the Thermophilic Bacterium Thermus thermophilus, Erin E. Killeavy, Gerwald Jogl, and Steven T. Gregory

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Degradation of MinD Oscillator Complexes by Escherichia coli ClpXP, Christopher J. LaBreck, Catherine E. Trebino, Colby N. Ferreira, Josiah Morrison, Eric C. DiBiasio, Joseph Conti, and Jodi L. Camberg

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Major histocompatibility complex class I Chain-related A and B (MICA and MICB) gene, allele, and haplotype associations with dengue infections in ethnic thais, Panpimon Luangtrakool, Sasijit Vejbaesya, Komon Luangtrakool, Somporn Ngamhawornwong, Kusuma Apisawes, Siripen Kalayanarooj, Louis R. Macareo, Stefan Fernandez, Richard G. Jarman, Robert W.M. Collins, Steven T. Cox, Anon Srikiatkhachorn, Alan L. Rothman, and Henry A.F. Stephens

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Cryo-electron Microscopy Structure of the 70S Ribosome from Enterococcus faecalis, Eileen L. Murphy, Kavindra V. Singh, Bryant Avila, Torsten Kleffmann, Steven Gregory, Barbara E. Murray, Kurt L. Krause, Reza Khayat, and Gerwald Jogl

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ApoE-modified liposomes mediate the antitumour effect of survivin promoter-driven HSVtk in hepatocellular carcinoma, Xiuli Mu, Xi Wang, Yan Wei, Chaochao Wen, Qi Zhang, Chunyang Xu, Chang Liu, Chan Zhang, Fanxiu Meng, Na Zhao, Tao Gong, Rui Guo, Gongqin Sun, Gaopeng Li, Hongwei Zhang, Qin Qin, Jun Xu, Xiushan Dong, Lumei Wang, and Baofeng Yu

Prediction and analysis of nature and function of lymphoma-associated gene TCF4 based on bioinformatics, Xiu Li Mu, Chao Chao Wen, Tao Tao Meng, Xi Wang, Yan Wei, Tao Gong, Gongqin Sun, Hong Wei Zhang, and Bao Feng Yu

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Tn-Seq reveals hidden complexity in the utilization of host-derived glutathione in Francisella tularensis, Kathryn M. Ramsey, Hannah E. Ledvina, Tenayaann M. Tresko, Jamie M. Wandzilak, Catherine A. Tower, Thomas A. Tallo, Caroline E. Schramm, S. Brook Peterson, Shawn J. Skerrett, Joseph D. Mougous, and Simon L. Dove

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Novel multiparameter correlates of Coxiella burnetii infection and vaccination identified by longitudinal deep immune profiling, P. M. Reeves, S. Raju Paul, L. Baeten, Y. Yi, J. Hess, D. Sobell, A. Scholzen, A. Garritsen, Anne S. De Groot, Leonard Moise, T. Brauns, R. Bowen, A. E. Sluder, and M. C. Poznansky

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Erratum: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest (BMC Biology (2020) 18 (90) DOI: 10.1186/s12915-020-00820-5), Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi Min Hsiao, Sylvie Hudaverdian, and Emmanuelle Jacquin-Joly

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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest, Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi Min Hsiao, Sylvie Hudaverdian, and Emmanuelle Jacquin-Joly

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Correction to: The Genome Sequence of the Grape Phylloxera Provides Insights into the Evolution, Adaptation, and Invasion Routes of an Iconic Pest, Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi-min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard, Gaëlle Le Goff, Gaël Le Trionnaire, Pablo Librado, Shanlin Liu, Eric Lombaert, Hsiao-ling Lu, Martine Maïbèche, Mohamed Makni, Marina Marcet-Houben, David Martínez-Torres, Camille Meslin, Nicolas Montagné, Nancy A. Moran, Daciana Papura, Nicolas Parisot, Yvan Rahbé, Mélanie Ribeiro Lopes, Aida Ripoll-Cladellas, Stéphanie Robin, Céline Roques, Pascale Roux, Julio Rozas, Alejandro Sánchez-Gracia, Jose F. Sánchez-Herrero, Didac Santesmasses, Iris Scatoni, Rémy-Félix Serre, Ming Tang, Wenhua Tian, Paul A. Umina, Manuella van Munster, Carole Vincent-Monégat, Joshua Wemmer, Alex C. C. Wilson, Ying Zhang, Chaoyang Zhao, Jing Zhao, Serena Zhao, Xin Zhou, François Delmotte, and Denis Tagu

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Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection, Alan L. Rothman and Et Al

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Analysis of cell-associated DENV RNA by oligo(dT) primed 5’ capture scRNAseq, Mark A. Sanborn, Tao Li, Kaitlin Victor, Hayden Siegfried, Christian Fung, Alan L. Rothman, Anon Srikiatkhachorn, Stefan Fernandez, Damon Ellison, Richard G. Jarman, Heather Friberg, Irina Maljkovic Berry, Jeffrey R. Currier, and Adam T. Waickman

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T lymphocyte responses to flaviviruses — diverse cell populations affect tendency toward protection and disease, Luis Alberto Sanchez Vargas, Anuja Mathew, and Alan L. Rothman

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A distinct role for recombination repair factors in an early cellular response to transcription–replication conflicts, Xin Shao, Amalie M. Joergensen, Niall G. Howlett, Michael Lisby, and Vibe H. Oestergaard

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Application of a Biphasic Mathematical Model of Cancer Cell Drug Response for Formulating Potent and Synergistic Targeted Drug Combinations to Triple Negative Breast Cancer Cells, Jinyan Shen, Li Li, Niall G. Howlett, Paul S. Cohen, and Gongqin Sun

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Biphasic Mathematical Model of Cell–Drug Interaction That Separates Target-Specific and Off-Target Inhibition and Suggests Potent Targeted Drug Combinations for Multi-Driver Colorectal Cancer Cells, Jinyan Shen, Li Li, Tao Yang, Paul S. Cohen, and Gongqin Sun

What translatable knowledge from dengue vaccine design can we pass onto future anti-parasitic vaccine development?, Anon Srikiatkhachorn

Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort, In Kyu Yoon, Anon Srikiatkhachorn, Maria Theresa Alera, Stefan Fernandez, Derek A.T. Cummings, and Henrik Salje

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Alterations in the ribosomal protein bL12 of E. coli affecting the initiation, elongation and termination of protein synthesis, Adam D. Younkin, Steven T. Gregory, and Michael O'Connor

Submissions from 2019

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Effects of Iron and Light Availability on Phytoplankton Photosynthetic Properties in the Ross Sea, Anne-Carlijn Alderkamp, Gert L. van Dijken, Kate E. Lowry, Kate M. Lewis, Hannah L. Joy-Warren, Willem van de Poll, Patrick Laan, Loes Gerringa, Tom O. Delmont, Bethany D. Jenkins, and Kevin R. Arrigo

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Patterns of diatom diversity correlate with dissolved trace metal concentrations and longitudinal position in the northeast Pacific coastal−offshore transition zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, James W. Moffett, Jagruti Vedamati, and Bethany D. Jenkins

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From the raw bar to the bench: Bivalves as models for human health, José A. Fernández Robledo, Raghavendra Yadavalli, Bassem Allam, Emmanuelle Pales Espinosa, Marco Gerdol, Samuele Greco, Rebecca J. Stevick, Marta Gómez-Chiarri, Ying Zhang, Cynthia A. Heil, Adrienne N. Tracy, David Bishop-Bailey, and Michael J. Metzger

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Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants, Benjamin Gabriel, Carey Medin, Jeremiah Alves, Ruth Nduati, Rose Kerubo Bosire, Dalton Wamalwa, Carey Farquhar, Grace John-Steward, and Barbara L. Lohman-Payne

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Multi-antigen Vaccination With Simultaneous Engagement of the OX40 Receptor Delays Malignant Mesothelioma Growth and Increases Survival in Animal Models, Peter R. Hoffmann, Fukun W. Hoffmann, Thomas A. Premeaux, Tsuyoshi Fujita, Elisa Soprana, Maddalena Panigada, Glen M. Chew, Guilhem Richard, Pooja Hindocha, Mark Menor, Vedbar S. Khadka, Youping Deng, Leonard Moise, Lishomwa C. Ndhlovu, Antonio Siccardi, Andrew D. Weinberg, Anne S. De Groot, and Pietro Bertino

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Planarity and out-of-plane vibrational modes of tryptophan and tyrosine in biomolecular modeling, Faramarz Joodaki, Lenore M. Martin, and Michael L. Greenfield

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Immune escape and immune camouflage may reduce the efficacy of RTS,S vaccine in Malawi, Sundos Khan, Matthew Parrillo, Andres H. Gutierrez, Frances E. Terry, Leonard Moise, William D. Martin, and Anne S. De Groot

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MinC N- and C-Domain interactions modulate ftsz assembly, division site selection, and minD-dependent oscillation in Escherichia coli, Christopher J. LaBreck, Joseph Conti, Marissa G. Viola, and Jodi L. Camberg

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Evidence for activated Lck protein tyrosine kinase as the driver of proliferation in acute myeloid leukemia cell, CTV-1, Li Li, Yixin Cui, Jinyan Shen, Hannah Dobson, and Gongqin Sun

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Ponatinib Inhibits Proliferation and Induces Apoptosis of Liver Cancer Cells, but Its Efficacy Is Compromised by Its Activation on PDK1/Akt/mTOR Signaling, Chang Liu, Xiuli Mu, Xuan Wang, Chan Zhang, Lina Zhang, Baofeng Yu, and Gongqin Sun

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Construction of a cDNA library and preliminary analysis of the expressed sequence tags of the earthworm Eisenia fetida (Savigny, 1826), Chang Liu, Xuan Wang, Jiu-Bo Tian, Pei-Yuan Ma, Fan-Xiu Meng, Qi Zhang, Bao-Feng Yu, Rui Guo, Zhi-Zhen Liu, Hai-Long Wang, Jun Xie, Niu-Llang Cheng, Jian-Hua Wang, Bo Niu, and Gongqin Sun

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Golgi membrane protein GP73 modified-liposome mediates the antitumor effect of survivin promoter-driven HSVtk in hepatocellular carcinoma, Chang Liu, Chaochao Wen, Xi Wang, Yan Wei, Chunyang Xu, Xiuli Mu, Lina Zhang, Xuan Wang, Jiubo Tian, Peiyuan Ma, Fanxiu Meng, Qi Zhang, Na Zhao, Baofeng Yu, Tao Gong, Rui Guo, Hailong Wang, Jun Xie, Gongqin Sun, Gaopeng Li, Hongwei Zhang, Qin Qin, Jun Xu, Xiushan Dong, and Lumei Wang

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RasGRF2 promotes migration and invasion of colorectal cancer cells by modulating expression of MMP9 through Src/Akt/NF-κB pathway, Peifen Lu, Junjun Chen, Lihong Yan, Lijun Yang, Litao Zhang, Jie Dai, Zixuan Hao, Tao Bai, Yanfeng Xi, Yahui Li, Zhiming Kang, Jun Xv, Gongqin Sun, and Tao Yang

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FANCD2 binding to H4K20me2 via a methyl-binding domain is essential for efficient DNA cross-link repair, Karissa L. Paquin, Nicholas E. Mamrak, Jada L. Garzon, Juan A. Cantres-Velez, Paul A. Azzinaro, Elizabeth A. Vuono, Kevin E. Lima, Jodi L. Camberg, and Niall G. Howlett